RNA–Protein interactions for RNA: YDR027C

VPS54, Transcript of Component of the GARP (Golgi-associated retrograde protein) complex, yeastyeast

Gene VPS54, Length 2,670 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS54YDR027C MIT1P40002 666 aa2.18□□□□□ -2.06
VPS54YDR027C TAX4P47030 604 aa2.18□□□□□ -2.06
VPS54YDR027C NMA2P53204 395 aa2.18□□□□□ -2.06
VPS54YDR027C CDC53Q12018 815 aaKnown RBP2.18□□□□□ -2.06
VPS54YDR027C ULA1Q12059 462 aa2.18□□□□□ -2.06
VPS54YDR027C YPK9Q12697 1472 aa2.18□□□□□ -2.06
VPS54YDR027C LAM4P38800 1345 aa2.18□□□□□ -2.06
VPS54YDR027C GSY1P23337 708 aa2.18□□□□□ -2.06
VPS54YDR027C YUR1P26725 428 aa2.18□□□□□ -2.06
VPS54YDR027C YKR018CP36114 725 aa2.18□□□□□ -2.06
VPS54YDR027C APN2P38207 520 aa2.18□□□□□ -2.06
VPS54YDR027C YHR097CP38809 366 aaKnown RBP2.18□□□□□ -2.06
VPS54YDR027C YNL195CP40168 261 aa2.18□□□□□ -2.06
VPS54YDR027C MPS3P47069 682 aa2.18□□□□□ -2.06
VPS54YDR027C NHX1Q04121 633 aa2.18□□□□□ -2.06
VPS54YDR027C YSH1Q06224 779 aaPredicted RBP2.18□□□□□ -2.06
VPS54YDR027C TPK2P06245 380 aa2.17□□□□□ -2.06
VPS54YDR027C RAD18P10862 487 aa2.17□□□□□ -2.06
VPS54YDR027C CTP1P38152 299 aa2.17□□□□□ -2.06
VPS54YDR027C PMT6P42934 759 aa2.17□□□□□ -2.06
VPS54YDR027C CAF16P43569 289 aa2.17□□□□□ -2.06
VPS54YDR027C CDC9P04819 755 aa2.17□□□□□ -2.06
VPS54YDR027C FEN2P25621 512 aaKnown RBP2.17□□□□□ -2.06
VPS54YDR027C SET2P46995 733 aaKnown RBP2.17□□□□□ -2.06
VPS54YDR027C RKI1Q12189 258 aa2.17□□□□□ -2.06
VPS54YDR027C STI1P15705 589 aaKnown RBP RIP-Chip data2.16□□□□□ -2.06not detected
VPS54YDR027C SEC15P22224 910 aa2.16□□□□□ -2.06
VPS54YDR027C VBA3P25594 458 aa2.16□□□□□ -2.06
VPS54YDR027C NTH1P32356 751 aa2.16□□□□□ -2.06
VPS54YDR027C CHZ1P40019 153 aaPredicted RBP2.16□□□□□ -2.06
VPS54YDR027C STP1Q00947 519 aa2.16□□□□□ -2.06
VPS54YDR027C NGL2Q03264 515 aaKnown RBP2.16□□□□□ -2.06
VPS54YDR027C HFD1Q04458 532 aa2.16□□□□□ -2.06
VPS54YDR027C ORM2Q06144 216 aa2.16□□□□□ -2.06
VPS54YDR027C YOR131CQ12486 218 aa2.16□□□□□ -2.06
VPS54YDR027C VPS15P22219 1454 aa2.16□□□□□ -2.06
VPS54YDR027C DOT6P40059 670 aaKnown RBP2.16□□□□□ -2.06
VPS54YDR027C CCT5P40413 562 aaKnown RBP2.16□□□□□ -2.06
VPS54YDR027C ULP2P40537 1034 aaPredicted RBP2.16□□□□□ -2.06
VPS54YDR027C BPL1P48445 690 aaPredicted RBP2.16□□□□□ -2.06
VPS54YDR027C RFX1P48743 811 aa2.16□□□□□ -2.06
VPS54YDR027C NSE3Q05541 303 aa2.16□□□□□ -2.06
VPS54YDR027C UFD4P33202 1483 aa2.16□□□□□ -2.06
VPS54YDR027C HOG1P32485 435 aa2.15□□□□□ -2.06
VPS54YDR027C SEC6P32844 805 aa2.15□□□□□ -2.06
VPS54YDR027C HOT13P36078 116 aa2.15□□□□□ -2.06
VPS54YDR027C DSS1P39112 969 aa2.15□□□□□ -2.06
VPS54YDR027C YIL077CP40508 320 aa2.15□□□□□ -2.06
VPS54YDR027C STB2P46679 850 aa2.15□□□□□ -2.06
VPS54YDR027C ATG36P46983 293 aa2.15□□□□□ -2.06
VPS54YDR027C YDR179W-AQ03983 463 aa2.15□□□□□ -2.06
VPS54YDR027C XRN1P22147 1528 aaKnown RBP2.15□□□□□ -2.06
VPS54YDR027C PAN1P32521 1480 aa2.15□□□□□ -2.07
VPS54YDR027C YRF1-1P0CX20 1796 aa2.15□□□□□ -2.07
VPS54YDR027C YRF1-5P0CX21 1796 aa2.15□□□□□ -2.07
VPS54YDR027C YRF1-8P0CX22 1796 aa2.15□□□□□ -2.07
VPS54YDR027C ERG20P08524 352 aaKnown RBP2.15□□□□□ -2.07
VPS54YDR027C KHA1P40309 873 aa2.15□□□□□ -2.07
VPS54YDR027C MAL11P53048 616 aa2.15□□□□□ -2.07
VPS54YDR027C DIP5P53388 608 aa2.15□□□□□ -2.07
VPS54YDR027C ARP4P80428 489 aa2.15□□□□□ -2.07
VPS54YDR027C LEE1Q02799 301 aaKnown RBP2.15□□□□□ -2.07
VPS54YDR027C POM34Q12445 299 aa2.15□□□□□ -2.07
VPS54YDR027C MDM12Q92328 271 aa2.15□□□□□ -2.07
VPS54YDR027C SKI3P17883 1432 aaKnown RBP2.15□□□□□ -2.07
VPS54YDR027C ERR1P0CX10 437 aa2.14□□□□□ -2.07
VPS54YDR027C ERR2P0CX11 437 aa2.14□□□□□ -2.07
VPS54YDR027C MBR1P23493 339 aa2.14□□□□□ -2.07
VPS54YDR027C MIH1P23748 554 aa2.14□□□□□ -2.07
VPS54YDR027C PSA1P41940 361 aaKnown RBP2.14□□□□□ -2.07
VPS54YDR027C UFO1Q04511 668 aa2.14□□□□□ -2.07
VPS54YDR027C ISA1Q07821 250 aaPredicted RBP2.14□□□□□ -2.07
VPS54YDR027C COS111P38308 924 aa2.14□□□□□ -2.07
VPS54YDR027C GPD1Q00055 391 aaKnown RBP2.14□□□□□ -2.07
VPS54YDR027C IRC3Q06683 689 aa2.14□□□□□ -2.07
VPS54YDR027C AI5_ALPHAQ9ZZX1 630 aa2.14□□□□□ -2.07
VPS54YDR027C ESP1Q03018 1630 aa2.13□□□□□ -2.07
VPS54YDR027C BRE5P53741 515 aaKnown RBP2.13□□□□□ -2.07
VPS54YDR027C ARG7Q04728 441 aa2.13□□□□□ -2.07
VPS54YDR027C YFT2Q06676 274 aa2.13□□□□□ -2.07
VPS54YDR027C CIR2Q08822 631 aa2.13□□□□□ -2.07
VPS54YDR027C TY1B-BRQ12193 1756 aa2.13□□□□□ -2.07
VPS54YDR027C TY1B-GR3Q12316 1755 aa2.13□□□□□ -2.07
VPS54YDR027C TY1B-ORQ92393 1755 aa2.13□□□□□ -2.07
VPS54YDR027C DOP1Q03921 1698 aa2.13□□□□□ -2.07
VPS54YDR027C RPS9BP05755 195 aaKnown RBP2.13□□□□□ -2.07
VPS54YDR027C SRD1P09007 221 aa2.13□□□□□ -2.07
VPS54YDR027C KIN82P25341 720 aa2.13□□□□□ -2.07
VPS54YDR027C AAD3P25612 363 aa2.13□□□□□ -2.07
VPS54YDR027C CPR8P53728 308 aa2.13□□□□□ -2.07
VPS54YDR027C DAK1P54838 584 aaKnown RBP2.13□□□□□ -2.07
VPS54YDR027C TDA9Q04545 1251 aa2.13□□□□□ -2.07
VPS54YDR027C VPS36Q06696 566 aa2.13□□□□□ -2.07
VPS54YDR027C MNN4P36044 1178 aa2.12□□□□□ -2.07
VPS54YDR027C OCA5P38738 679 aa2.12□□□□□ -2.07
VPS54YDR027C SSZ1P38788 538 aaKnown RBP2.12□□□□□ -2.07
VPS54YDR027C YHR202WP38887 602 aa2.12□□□□□ -2.07
VPS54YDR027C SCC2Q04002 1493 aa2.12□□□□□ -2.07
VPS54YDR027C MSS1P32559 526 aaPredicted RBP2.12□□□□□ -2.07
VPS54YDR027C ELF1P36053 145 aa2.12□□□□□ -2.07
Retrieved 100 of 5,963 RNA–protein pairs in 16.8 ms