RNA–Protein interactions for RNA: LSR1

LSR1, Transcript of U2 spliceosomal RNA (U2 snRNA), component of the spliceosome, yeastyeast

Gene LSR1, Length 1,175 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
LSR1LSR1 ALY2P47029 1046 aa9.06□□□□□ -0.96
LSR1LSR1 NNF2P53253 936 aa9.06□□□□□ -0.96
LSR1LSR1 LSC1P53598 329 aaKnown RBP9.06□□□□□ -0.96
LSR1LSR1 SQS1P53866 767 aaKnown RBP9.06□□□□□ -0.96
LSR1LSR1 TRS130Q03660 1102 aa9.06□□□□□ -0.96
LSR1LSR1 YMR321CQ04898 105 aa9.06□□□□□ -0.96
LSR1LSR1 ECM7Q06200 448 aa9.06□□□□□ -0.96
LSR1LSR1 YOR059CQ08448 450 aaKnown RBP9.06□□□□□ -0.96
LSR1LSR1 OSW2Q12202 724 aa9.06□□□□□ -0.96
LSR1LSR1 CDC24P11433 854 aaPredicted RBP9.05□□□□□ -0.96
LSR1LSR1 VMA4P22203 233 aaKnown RBP9.05□□□□□ -0.96
LSR1LSR1 TRX1P22217 103 aaKnown RBP9.05□□□□□ -0.96
LSR1LSR1 BUD14P27637 709 aa9.05□□□□□ -0.96
LSR1LSR1 EFT1P32324 842 aaKnown RBP9.05□□□□□ -0.96
LSR1LSR1 DPH2P32461 534 aa9.05□□□□□ -0.96
LSR1LSR1 MRP4P32902 394 aa9.05□□□□□ -0.96
LSR1LSR1 RFC3P38629 340 aa9.05□□□□□ -0.96
LSR1LSR1 KHA1P40309 873 aa9.05□□□□□ -0.96
LSR1LSR1 HOS4P40480 1083 aa9.05□□□□□ -0.96
LSR1LSR1 MDJ2P42834 146 aa9.05□□□□□ -0.96
LSR1LSR1 RGD2P43556 714 aa9.05□□□□□ -0.96
LSR1LSR1 TAF6P53040 516 aa9.05□□□□□ -0.96
LSR1LSR1 YGR125WP53273 1036 aa9.05□□□□□ -0.96
LSR1LSR1 CUS1Q02554 436 aaPredicted RBP9.05□□□□□ -0.96
LSR1LSR1 THI7Q05998 598 aa9.05□□□□□ -0.96
LSR1LSR1 YPT6Q99260 215 aa9.05□□□□□ -0.96
LSR1LSR1 ECM29P38737 1868 aa9.04□□□□□ -0.96
LSR1LSR1 ILS1P09436 1072 aaKnown RBP9.04□□□□□ -0.96
LSR1LSR1 VMA2P16140 517 aaKnown RBP9.04□□□□□ -0.96
LSR1LSR1 MCM5P29496 775 aaKnown RBP9.04□□□□□ -0.96
LSR1LSR1 IRE1P32361 1115 aa9.04□□□□□ -0.96
LSR1LSR1 RTG2P32608 588 aaKnown RBP9.04□□□□□ -0.96
LSR1LSR1 TFC3P34111 1160 aa9.04□□□□□ -0.96
LSR1LSR1 SMF2P38778 549 aa9.04□□□□□ -0.96
LSR1LSR1 GPB2P39717 880 aa9.04□□□□□ -0.96
LSR1LSR1 VAB2P40003 282 aa9.04□□□□□ -0.96
LSR1LSR1 SIP5P40210 489 aaKnown RBP9.04□□□□□ -0.96
LSR1LSR1 SNZ3P43545 298 aa9.04□□□□□ -0.96
LSR1LSR1 SCD6P45978 349 aaKnown RBP RIP-Chip data9.04□□□□□ -0.96not detected
LSR1LSR1 HLJ1P48353 224 aa9.04□□□□□ -0.96
LSR1LSR1 PCL10P53124 433 aa9.04□□□□□ -0.96
LSR1LSR1 MNP1P53163 194 aaPredicted RBP9.04□□□□□ -0.96
LSR1LSR1 SNZ2P53824 298 aa9.04□□□□□ -0.96
LSR1LSR1 KTR5P53966 522 aaPredicted RBP9.04□□□□□ -0.96
LSR1LSR1 UBX4P54730 416 aa9.04□□□□□ -0.96
LSR1LSR1 SXM1Q04175 944 aaKnown RBP9.04□□□□□ -0.96
LSR1LSR1 GPI13Q07830 1017 aa9.04□□□□□ -0.96
LSR1LSR1 AVL9Q12500 764 aa9.04□□□□□ -0.96
LSR1LSR1 CLB4P24871 460 aa9.03□□□□□ -0.96
LSR1LSR1 VID24P38263 362 aa9.03□□□□□ -0.96
LSR1LSR1 FZO1P38297 855 aa9.03□□□□□ -0.96
LSR1LSR1 PCM1P38628 557 aaKnown RBP9.03□□□□□ -0.96
LSR1LSR1 QNS1P38795 714 aaKnown RBP9.03□□□□□ -0.96
LSR1LSR1 LIN1P38852 340 aaPredicted RBP9.03□□□□□ -0.96
LSR1LSR1 SAW1P39735 261 aa9.03□□□□□ -0.96
LSR1LSR1 SAH1P39954 449 aaKnown RBP9.03□□□□□ -0.96
LSR1LSR1 YIL001WP40560 513 aa9.03□□□□□ -0.96
LSR1LSR1 YJL107CP42947 387 aa9.03□□□□□ -0.96
LSR1LSR1 LIA1P47120 325 aaKnown RBP9.03□□□□□ -0.96
LSR1LSR1 TAN1P53072 289 aaPredicted RBP9.03□□□□□ -0.96
LSR1LSR1 SPO19Q03029 223 aa9.03□□□□□ -0.96
LSR1LSR1 SLD5Q03406 294 aa9.03□□□□□ -0.96
LSR1LSR1 GPN2Q08726 347 aaPredicted RBP9.03□□□□□ -0.96
LSR1LSR1 SSC1P0CS90 654 aaKnown RBP9.02□□□□□ -0.97
LSR1LSR1 CDC20P26309 610 aa9.02□□□□□ -0.97
LSR1LSR1 SPT5P27692 1063 aaKnown RBP9.02□□□□□ -0.97
LSR1LSR1 MRE11P32829 692 aa9.02□□□□□ -0.97
LSR1LSR1 BCS1P32839 456 aa9.02□□□□□ -0.97
LSR1LSR1 IXR1P33417 597 aa9.02□□□□□ -0.97
LSR1LSR1 SWC5P38326 303 aa9.02□□□□□ -0.97
LSR1LSR1 PPX1P38698 397 aa9.02□□□□□ -0.97
LSR1LSR1 FLC2P39719 783 aa9.02□□□□□ -0.97
LSR1LSR1 SEC26P41810 973 aaKnown RBP9.02□□□□□ -0.97
LSR1LSR1 UBP6P43593 499 aaKnown RBP9.02□□□□□ -0.97
LSR1LSR1 GPD1Q00055 391 aaKnown RBP9.02□□□□□ -0.97
LSR1LSR1 SLT2Q00772 484 aa9.02□□□□□ -0.97
LSR1LSR1 MSH6Q03834 1242 aa9.02□□□□□ -0.97
LSR1LSR1 ADE13Q05911 482 aaKnown RBP9.02□□□□□ -0.97
LSR1LSR1 SHS1Q07657 551 aa9.02□□□□□ -0.97
LSR1LSR1 VHS3Q08438 674 aa9.02□□□□□ -0.97
LSR1LSR1 YLR053CQ12026 108 aa9.02□□□□□ -0.97
LSR1LSR1 GPM3Q12326 303 aa9.02□□□□□ -0.97
LSR1LSR1 CDC19P00549 500 aaKnown RBP9.01□□□□□ -0.97
LSR1LSR1 TEF1P02994 458 aaKnown RBP9.01□□□□□ -0.97
LSR1LSR1 IMA3P0CW40 589 aa9.01□□□□□ -0.97
LSR1LSR1 IMA4P0CW41 589 aa9.01□□□□□ -0.97
LSR1LSR1 ASP3-2P0CX77 362 aa9.01□□□□□ -0.97
LSR1LSR1 ASP3-3P0CX78 362 aa9.01□□□□□ -0.97
LSR1LSR1 ASP3-4P0CX79 362 aa9.01□□□□□ -0.97
LSR1LSR1 ASP3-1P0CZ17 362 aa9.01□□□□□ -0.97
LSR1LSR1 RPL4AP10664 362 aaKnown RBP9.01□□□□□ -0.97
LSR1LSR1 GCD2P12754 651 aaPredicted RBP9.01□□□□□ -0.97
LSR1LSR1 PWP1P21304 576 aaKnown RBP9.01□□□□□ -0.97
LSR1LSR1 SLY1P22213 666 aa9.01□□□□□ -0.97
LSR1LSR1 URA7P28274 579 aaKnown RBP9.01□□□□□ -0.97
LSR1LSR1 RME1P32338 300 aaKnown RBP9.01□□□□□ -0.97
LSR1LSR1 COY1P34237 679 aa9.01□□□□□ -0.97
LSR1LSR1 ETR1P38071 380 aa9.01□□□□□ -0.97
LSR1LSR1 MMS4P38257 691 aa9.01□□□□□ -0.97
LSR1LSR1 RPS7BP48164 190 aaKnown RBP9.01□□□□□ -0.97
Retrieved 100 of 5,963 RNA–protein pairs in 10.6 ms