RNA–Protein interactions for RNA: ENST00000367256.9

SYNE1-208, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,742 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-208ENST00000367256 CDK13Q14004 1512 aaKnown RBP8.23□□□□□ -1.09
SYNE1-208ENST00000367256 TTC36A6NLP5 189 aa8.23□□□□□ -1.09
SYNE1-208ENST00000367256 CALM1P0DP23 149 aa8.23□□□□□ -1.09
SYNE1-208ENST00000367256 CALM2P0DP24 149 aa8.23□□□□□ -1.09
SYNE1-208ENST00000367256 CALM3P0DP25 149 aa8.23□□□□□ -1.09
SYNE1-208ENST00000367256 HPDP32754 393 aaPredicted RBP8.23□□□□□ -1.09
SYNE1-208ENST00000367256 FEZ2Q9UHY8 353 aaPredicted RBP8.23□□□□□ -1.09
SYNE1-208ENST00000367256 ERCC6LQ2NKX8 1250 aa8.23□□□□□ -1.09
SYNE1-208ENST00000367256 NEK1Q96PY6 1258 aa8.23□□□□□ -1.09
SYNE1-208ENST00000367256 PPP1R2P41236 205 aa8.23□□□□□ -1.09
SYNE1-208ENST00000367256 RTN1Q16799 776 aa8.23□□□□□ -1.09
SYNE1-208ENST00000367256 FAM114A2Q9NRY5 505 aa8.23□□□□□ -1.09
SYNE1-208ENST00000367256 PPFIBP2Q8ND30 876 aa8.23□□□□□ -1.09
SYNE1-208ENST00000367256 CABP5Q9NP86 173 aa8.23□□□□□ -1.09
SYNE1-208ENST00000367256 USP48Q86UV5 1035 aa8.23□□□□□ -1.09
SYNE1-208ENST00000367256 TBC1D31Q96DN5 1066 aa8.23□□□□□ -1.09
SYNE1-208ENST00000367256 GPR161Q8N6U8 529 aaKnown RBP8.23□□□□□ -1.09
SYNE1-208ENST00000367256 AFAP1L1Q8TED9 768 aa8.23□□□□□ -1.09
SYNE1-208ENST00000367256 CDC5LQ99459 802 aaKnown RBP8.23□□□□□ -1.09
SYNE1-208ENST00000367256 INSRP06213 1382 aa8.23□□□□□ -1.09
SYNE1-208ENST00000367256 HSPA1LP34931 641 aa8.23□□□□□ -1.09
SYNE1-208ENST00000367256 CCDC184Q52MB2 194 aa8.23□□□□□ -1.09
SYNE1-208ENST00000367256 MYRIPQ8NFW9 859 aa8.23□□□□□ -1.09
SYNE1-208ENST00000367256 NUF2Q9BZD4 464 aa8.23□□□□□ -1.09
SYNE1-208ENST00000367256 CFAP43Q8NDM7 1665 aa8.22□□□□□ -1.09
SYNE1-208ENST00000367256 CTTNBP2Q8WZ74 1663 aa8.22□□□□□ -1.09
SYNE1-208ENST00000367256 F6X3S4 739 aa8.22□□□□□ -1.09
SYNE1-208ENST00000367256 GIGYF1O75420 1035 aaPredicted RBP8.22□□□□□ -1.09
SYNE1-208ENST00000367256 CCT6BQ92526 530 aa8.22□□□□□ -1.09
SYNE1-208ENST00000367256 VCXQ9H320 206 aa8.22□□□□□ -1.09
SYNE1-208ENST00000367256 INF2Q27J81 1249 aa8.22□□□□□ -1.09
SYNE1-208ENST00000367256 HDAC9Q9UKV0 1011 aa8.22□□□□□ -1.09
SYNE1-208ENST00000367256 TTC41PQ6P2S7 1318 aa8.22□□□□□ -1.09
SYNE1-208ENST00000367256 UAP1Q16222 522 aaPredicted RBP8.22□□□□□ -1.09
SYNE1-208ENST00000367256 GEN1Q17RS7 908 aa8.22□□□□□ -1.09
SYNE1-208ENST00000367256 CCDC62Q6P9F0 684 aa8.22□□□□□ -1.09
SYNE1-208ENST00000367256 MAGI1Q96QZ7 1491 aaPredicted RBP8.22□□□□□ -1.09
SYNE1-208ENST00000367256 TOPBP1Q92547 1522 aa8.22□□□□□ -1.09
SYNE1-208ENST00000367256 LZTFL1Q9NQ48 299 aa8.22□□□□□ -1.09
SYNE1-208ENST00000367256 LUC7L2Q9Y383 392 aaKnown RBP8.22□□□□□ -1.09
SYNE1-208ENST00000367256 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP8.22□□□□□ -1.09
SYNE1-208ENST00000367256 NAPAP54920 295 aa8.22□□□□□ -1.09
SYNE1-208ENST00000367256 LMNTD2Q8IXW0 634 aa8.22□□□□□ -1.09
SYNE1-208ENST00000367256 GTF3C6Q969F1 213 aa8.22□□□□□ -1.09
SYNE1-208ENST00000367256 CCDC42Q96M95 316 aa8.22□□□□□ -1.09
SYNE1-208ENST00000367256 PPANQ9NQ55 473 aaKnown RBP8.22□□□□□ -1.09
SYNE1-208ENST00000367256 GNAQP50148 359 aa8.22□□□□□ -1.09
SYNE1-208ENST00000367256 GKAP1Q5VSY0 366 aaPredicted RBP8.22□□□□□ -1.09
SYNE1-208ENST00000367256 SPATS2Q86XZ4 545 aaKnown RBP8.22□□□□□ -1.09
SYNE1-208ENST00000367256 USHBP1Q8N6Y0 703 aa8.22□□□□□ -1.09
SYNE1-208ENST00000367256 CCDC170Q8IYT3 715 aa8.22□□□□□ -1.09
SYNE1-208ENST00000367256 SOS1Q07889 1333 aaPredicted RBP8.22□□□□□ -1.09
SYNE1-208ENST00000367256 MARCKSP29966 332 aaPredicted RBP8.22□□□□□ -1.09
SYNE1-208ENST00000367256 CALCOCO2Q13137 446 aa8.22□□□□□ -1.09
SYNE1-208ENST00000367256 IMPACTQ9P2X3 320 aa8.22□□□□□ -1.09
SYNE1-208ENST00000367256 RABGAP1Q9Y3P9 1069 aa8.22□□□□□ -1.09
SYNE1-208ENST00000367256 RAD50Q92878 1312 aa8.21□□□□□ -1.09
SYNE1-208ENST00000367256 KLF18A0A0U1RQI7 1052 aa8.21□□□□□ -1.09
SYNE1-208ENST00000367256 PCK1P35558 622 aa8.21□□□□□ -1.09
SYNE1-208ENST00000367256 NEDD9Q14511 834 aa8.21□□□□□ -1.09
SYNE1-208ENST00000367256 SBDSQ9Y3A5 250 aaKnown RBP eCLIP8.21□□□□□ -1.09
SYNE1-208ENST00000367256 FAM169AQ9Y6X4 670 aa8.21□□□□□ -1.09
SYNE1-208ENST00000367256 MRC2Q9UBG0 1479 aa8.21□□□□□ -1.09
SYNE1-208ENST00000367256 CLNS1AP54105 237 aaKnown RBP8.21□□□□□ -1.09
SYNE1-208ENST00000367256 FAM160A1Q05DH4 1040 aa8.21□□□□□ -1.09
SYNE1-208ENST00000367256 FLIIQ13045 1269 aa8.21□□□□□ -1.09
SYNE1-208ENST00000367256 CCDC65Q8IXS2 484 aa8.21□□□□□ -1.09
SYNE1-208ENST00000367256 ZBTB43O43298 467 aa8.21□□□□□ -1.09
SYNE1-208ENST00000367256 SATB1Q01826 763 aa8.21□□□□□ -1.09
SYNE1-208ENST00000367256 MCUR1Q96AQ8 359 aa8.21□□□□□ -1.09
SYNE1-208ENST00000367256 ALG1Q9BT22 464 aa8.21□□□□□ -1.09
SYNE1-208ENST00000367256 UBE3BQ7Z3V4 1068 aa8.21□□□□□ -1.09
SYNE1-208ENST00000367256 C10orf67Q8IYJ2 551 aa8.21□□□□□ -1.09
SYNE1-208ENST00000367256 AFAP1L2Q8N4X5 818 aa8.21□□□□□ -1.09
SYNE1-208ENST00000367256 DNAJC25Q9H1X3 360 aa8.21□□□□□ -1.09
SYNE1-208ENST00000367256 ZNF526Q8TF50 670 aaPredicted RBP8.21□□□□□ -1.1
SYNE1-208ENST00000367256 C6orf50Q9HD87 102 aa8.21□□□□□ -1.1
SYNE1-208ENST00000367256 I3L4J1 428 aa8.21□□□□□ -1.1
SYNE1-208ENST00000367256 KRT2P35908 639 aa8.21□□□□□ -1.1
SYNE1-208ENST00000367256 IQCDQ96DY2 449 aa8.21□□□□□ -1.1
SYNE1-208ENST00000367256 STX8Q9UNK0 236 aa8.21□□□□□ -1.1
SYNE1-208ENST00000367256 CTNND2Q9UQB3 1225 aa8.21□□□□□ -1.1
SYNE1-208ENST00000367256 CALML3P27482 149 aa8.21□□□□□ -1.1
SYNE1-208ENST00000367256 RASA3Q14644 834 aa8.21□□□□□ -1.1
SYNE1-208ENST00000367256 E7EVH7 732 aa8.21□□□□□ -1.1
SYNE1-208ENST00000367256 PRIM1P49642 420 aaKnown RBP8.21□□□□□ -1.1
SYNE1-208ENST00000367256 ST5P78524 1137 aa8.21□□□□□ -1.1
SYNE1-208ENST00000367256 MPRIPQ6WCQ1 1025 aa8.21□□□□□ -1.1
SYNE1-208ENST00000367256 RPGRIP1Q96KN7 1286 aa8.21□□□□□ -1.1
SYNE1-208ENST00000367256 KIAA0586Q9BVV6 1533 aa8.21□□□□□ -1.1
SYNE1-208ENST00000367256 C6orf229H3BNL8 230 aa8.21□□□□□ -1.1
SYNE1-208ENST00000367256 NCBP1Q09161 790 aaKnown RBP8.21□□□□□ -1.1
SYNE1-208ENST00000367256 ESR2Q92731 530 aa8.21□□□□□ -1.1
SYNE1-208ENST00000367256 ESYT1Q9BSJ8 1104 aa8.21□□□□□ -1.1
SYNE1-208ENST00000367256 PARD3Q8TEW0 1356 aa8.2□□□□□ -1.1
SYNE1-208ENST00000367256 BIVM-ERCC5R4GMW8 1640 aa8.2□□□□□ -1.1
SYNE1-208ENST00000367256 CETN3O15182 167 aa8.2□□□□□ -1.1
SYNE1-208ENST00000367256 SMARCC2Q8TAQ2 1214 aa8.2□□□□□ -1.1
SYNE1-208ENST00000367256 MTUS1Q9ULD2 1270 aa8.2□□□□□ -1.1
SYNE1-208ENST00000367256 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP8.2□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms