RNA–Protein interactions for RNA: ENST00000466897.1

NPHP4-205, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 1,192 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-205ENST00000466897 DUX4L5P0CJ88 424 aa12.61□□□□□ -0.39
NPHP4-205ENST00000466897 DUX4L6P0CJ89 424 aa12.61□□□□□ -0.39
NPHP4-205ENST00000466897 DUX4L7P0CJ90 424 aa12.61□□□□□ -0.39
NPHP4-205ENST00000466897 FUT3P21217 361 aa12.61□□□□□ -0.39
NPHP4-205ENST00000466897 SNU13P55769 128 aaKnown RBP12.61□□□□□ -0.39
NPHP4-205ENST00000466897 TMEM249Q2WGJ8 235 aa12.61□□□□□ -0.39
NPHP4-205ENST00000466897 FOXB2Q5VYV0 432 aa12.61□□□□□ -0.39
NPHP4-205ENST00000466897 SIGIRRQ6IA17 410 aa12.61□□□□□ -0.39
NPHP4-205ENST00000466897 DUX4L9Q6RFH8 374 aaPredicted RBP12.61□□□□□ -0.39
NPHP4-205ENST00000466897 ASCC1Q8N9N2 400 aaKnown RBP12.61□□□□□ -0.39
NPHP4-205ENST00000466897 OR56B1Q8NGI3 324 aa12.61□□□□□ -0.39
NPHP4-205ENST00000466897 DUX4Q9UBX2 424 aa12.61□□□□□ -0.39
NPHP4-205ENST00000466897 HSF4Q9ULV5 492 aa12.61□□□□□ -0.39
NPHP4-205ENST00000466897 MALRD1Q5VYJ5 2156 aa12.61□□□□□ -0.39
NPHP4-205ENST00000466897 FLNAP21333 2647 aaKnown RBP12.6□□□□□ -0.39
NPHP4-205ENST00000466897 ZNF469Q96JG9 3925 aaPredicted RBP12.6□□□□□ -0.39
NPHP4-205ENST00000466897 A0A0A6YYD4 124 aa12.6□□□□□ -0.39
NPHP4-205ENST00000466897 B4DSR2 109 aa12.6□□□□□ -0.39
NPHP4-205ENST00000466897 FAM157AC9JC47 383 aa12.6□□□□□ -0.39
NPHP4-205ENST00000466897 SIRPB1O00241 398 aa12.6□□□□□ -0.39
NPHP4-205ENST00000466897 MGST3O14880 152 aa12.6□□□□□ -0.39
NPHP4-205ENST00000466897 TFF1P04155 84 aa12.6□□□□□ -0.39
NPHP4-205ENST00000466897 SELLP14151 372 aa12.6□□□□□ -0.39
NPHP4-205ENST00000466897 FOSL1P15407 271 aa12.6□□□□□ -0.39
NPHP4-205ENST00000466897 GABRR1P24046 479 aa12.6□□□□□ -0.39
NPHP4-205ENST00000466897 CHATP28329 748 aa12.6□□□□□ -0.39
NPHP4-205ENST00000466897 ERP29P30040 261 aaKnown RBP12.6□□□□□ -0.39
NPHP4-205ENST00000466897 OR3A1P47881 315 aa12.6□□□□□ -0.39
NPHP4-205ENST00000466897 GZMKP49863 264 aa12.6□□□□□ -0.39
NPHP4-205ENST00000466897 EFNB2P52799 333 aa12.6□□□□□ -0.39
NPHP4-205ENST00000466897 SEC61A1P61619 476 aaKnown RBP12.6□□□□□ -0.39
NPHP4-205ENST00000466897 PLA2G7Q13093 441 aa12.6□□□□□ -0.39
NPHP4-205ENST00000466897 CD276Q5ZPR3 534 aa12.6□□□□□ -0.39
NPHP4-205ENST00000466897 RAB12Q6IQ22 244 aa12.6□□□□□ -0.39
NPHP4-205ENST00000466897 MZT2AQ6P582 158 aa12.6□□□□□ -0.39
NPHP4-205ENST00000466897 CIARTQ8N365 385 aaPredicted RBP12.6□□□□□ -0.39
NPHP4-205ENST00000466897 SUMF2Q8NBJ7 301 aa12.6□□□□□ -0.39
NPHP4-205ENST00000466897 TMEM185AQ8NFB2 350 aa12.6□□□□□ -0.39
NPHP4-205ENST00000466897 OR5H6Q8NGV6 325 aa12.6□□□□□ -0.39
NPHP4-205ENST00000466897 C8orf46Q8TAG6 207 aa12.6□□□□□ -0.39
NPHP4-205ENST00000466897 SLC25A38Q96DW6 304 aa12.6□□□□□ -0.39
NPHP4-205ENST00000466897 NICN1Q9BSH3 213 aa12.6□□□□□ -0.39
NPHP4-205ENST00000466897 SLIRPQ9GZT3 109 aaKnown RBP12.6□□□□□ -0.39
NPHP4-205ENST00000466897 ABCG5Q9H222 651 aa12.6□□□□□ -0.39
NPHP4-205ENST00000466897 NCOR1P1Q9H4R4 102 aa12.6□□□□□ -0.39
NPHP4-205ENST00000466897 RHBDL2Q9NX52 303 aa12.6□□□□□ -0.39
NPHP4-205ENST00000466897 A3GALT2U3KPV4 340 aa12.6□□□□□ -0.39
NPHP4-205ENST00000466897 A0A075B6Q4 140 aa12.59□□□□□ -0.39
NPHP4-205ENST00000466897 TRBV23-1A0A0A0MS06 115 aa12.59□□□□□ -0.39
NPHP4-205ENST00000466897 RAB27BO00194 218 aa12.59□□□□□ -0.39
NPHP4-205ENST00000466897 CA11O75493 328 aa12.59□□□□□ -0.39
NPHP4-205ENST00000466897 IGHV4-31P0DP07 118 aa12.59□□□□□ -0.39
NPHP4-205ENST00000466897 SCN1BQ07699 218 aa12.59□□□□□ -0.39
NPHP4-205ENST00000466897 RBM39Q14498 530 aaKnown RBP12.59□□□□□ -0.39
NPHP4-205ENST00000466897 GRK1Q15835 563 aa12.59□□□□□ -0.39
NPHP4-205ENST00000466897 PAN3Q58A45 887 aaKnown RBP12.59□□□□□ -0.39
NPHP4-205ENST00000466897 UBE2NLQ5JXB2 153 aa12.59□□□□□ -0.39
NPHP4-205ENST00000466897 LINC01356Q8N9X3 169 aa12.59□□□□□ -0.39
NPHP4-205ENST00000466897 OR4S1Q8NGB4 309 aa12.59□□□□□ -0.39
NPHP4-205ENST00000466897 RAB40AQ8WXH6 277 aa12.59□□□□□ -0.39
NPHP4-205ENST00000466897 DACT3Q96B18 629 aaPredicted RBP12.59□□□□□ -0.39
NPHP4-205ENST00000466897 C18orf12Q96KH6 178 aa12.59□□□□□ -0.39
NPHP4-205ENST00000466897 DPCDQ9BVM2 203 aaPredicted RBP12.59□□□□□ -0.39
NPHP4-205ENST00000466897 NXF2Q9GZY0 626 aaKnown RBP12.59□□□□□ -0.39
NPHP4-205ENST00000466897 LPAR3Q9UBY5 353 aa12.59□□□□□ -0.39
NPHP4-205ENST00000466897 CELSR1Q9NYQ6 3014 aa12.59□□□□□ -0.39
NPHP4-205ENST00000466897 FUOMA2VDF0 154 aa12.58□□□□□ -0.4
NPHP4-205ENST00000466897 MCRIP1C9JLW8 97 aa12.58□□□□□ -0.4
NPHP4-205ENST00000466897 APOA1P02647 267 aa12.58□□□□□ -0.4
NPHP4-205ENST00000466897 MSMBP08118 114 aa12.58□□□□□ -0.4
NPHP4-205ENST00000466897 BLVRBP30043 206 aaPredicted RBP12.58□□□□□ -0.4
NPHP4-205ENST00000466897 PAX2Q02962 417 aa12.58□□□□□ -0.4
NPHP4-205ENST00000466897 ARL6IP1Q15041 203 aa12.58□□□□□ -0.4
NPHP4-205ENST00000466897 PDCD1Q15116 288 aa12.58□□□□□ -0.4
NPHP4-205ENST00000466897 ATAD3CQ5T2N8 411 aa12.58□□□□□ -0.4
NPHP4-205ENST00000466897 GDPD3Q7L5L3 318 aa12.58□□□□□ -0.4
NPHP4-205ENST00000466897 BIVMQ86UB2 503 aa12.58□□□□□ -0.4
NPHP4-205ENST00000466897 LY6G5BQ8NDX9 201 aa12.58□□□□□ -0.4
NPHP4-205ENST00000466897 OR10R2Q8NGX6 335 aa12.58□□□□□ -0.4
NPHP4-205ENST00000466897 ST8SIA4Q92187 359 aa12.58□□□□□ -0.4
NPHP4-205ENST00000466897 NEDD4LQ96PU5 975 aa12.58□□□□□ -0.4
NPHP4-205ENST00000466897 DCTN5Q9BTE1 182 aa12.58□□□□□ -0.4
NPHP4-205ENST00000466897 TMUB1Q9BVT8 246 aa12.58□□□□□ -0.4
NPHP4-205ENST00000466897 PPA2Q9H2U2 334 aa12.58□□□□□ -0.4
NPHP4-205ENST00000466897 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP12.58□□□□□ -0.4
NPHP4-205ENST00000466897 ZNF581Q9P0T4 197 aa12.58□□□□□ -0.4
NPHP4-205ENST00000466897 RPUSD1Q9UJJ7 312 aaKnown RBP12.58□□□□□ -0.4
NPHP4-205ENST00000466897 PEX16Q9Y5Y5 336 aa12.58□□□□□ -0.4
NPHP4-205ENST00000466897 LOC105371242A0A075B767 164 aa12.57□□□□□ -0.4
NPHP4-205ENST00000466897 TRAV20A0A0B4J274 112 aa12.57□□□□□ -0.4
NPHP4-205ENST00000466897 SOCS1O15524 211 aa12.57□□□□□ -0.4
NPHP4-205ENST00000466897 PHF1O43189 567 aaPredicted RBP12.57□□□□□ -0.4
NPHP4-205ENST00000466897 NDUFB7P17568 137 aa12.57□□□□□ -0.4
NPHP4-205ENST00000466897 GATA3P23771 443 aa12.57□□□□□ -0.4
NPHP4-205ENST00000466897 ZFP36P26651 326 aaKnown RBP12.57□□□□□ -0.4
NPHP4-205ENST00000466897 VEGFCP49767 419 aa12.57□□□□□ -0.4
NPHP4-205ENST00000466897 P2RX3P56373 397 aa12.57□□□□□ -0.4
NPHP4-205ENST00000466897 TMEM50BP56557 158 aa12.57□□□□□ -0.4
NPHP4-205ENST00000466897 MEF2CQ06413 473 aaPredicted RBP12.57□□□□□ -0.4
NPHP4-205ENST00000466897 BTN2A1Q7KYR7 527 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms