RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 RBM38Q9H0Z9 239 aaKnown RBP8.54□□□□□ -1.04
CD44-207ENST00000425428 CHODLQ9H9P2 273 aa8.54□□□□□ -1.04
CD44-207ENST00000425428 IL36GQ9NZH8 169 aa8.54□□□□□ -1.04
CD44-207ENST00000425428 RAB22AQ9UL26 194 aa8.54□□□□□ -1.04
CD44-207ENST00000425428 TANC2Q9HCD6 1990 aa8.54□□□□□ -1.04
CD44-207ENST00000425428 ARID1AO14497 2285 aa8.53□□□□□ -1.04
CD44-207ENST00000425428 PPIAL4EA0A075B759 164 aa8.53□□□□□ -1.04
CD44-207ENST00000425428 ISPDA4D126 451 aa8.53□□□□□ -1.04
CD44-207ENST00000425428 NKX6-3A6NJ46 265 aa8.53□□□□□ -1.04
CD44-207ENST00000425428 PPIAL4DF5H284 164 aa8.53□□□□□ -1.04
CD44-207ENST00000425428 SH2D1BO14796 132 aa8.53□□□□□ -1.04
CD44-207ENST00000425428 PPIHO43447 177 aaKnown RBP8.53□□□□□ -1.04
CD44-207ENST00000425428 NDUFA2O43678 99 aa8.53□□□□□ -1.04
CD44-207ENST00000425428 ANGPTL7O43827 346 aa8.53□□□□□ -1.04
CD44-207ENST00000425428 SSX4O60224 188 aa8.53□□□□□ -1.04
CD44-207ENST00000425428 HPXP02790 462 aa8.53□□□□□ -1.04
CD44-207ENST00000425428 CLEC2LP0C7M8 214 aa8.53□□□□□ -1.04
CD44-207ENST00000425428 PGA5P0DJD9 388 aa8.53□□□□□ -1.04
CD44-207ENST00000425428 PPIAL4FP0DN26 164 aa8.53□□□□□ -1.04
CD44-207ENST00000425428 PRKACAP17612 351 aa8.53□□□□□ -1.04
CD44-207ENST00000425428 TGFBR1P36897 503 aa8.53□□□□□ -1.04
CD44-207ENST00000425428 CFHR2P36980 270 aa8.53□□□□□ -1.04
CD44-207ENST00000425428 ART1P52961 327 aa8.53□□□□□ -1.04
CD44-207ENST00000425428 GMFBP60983 142 aa8.53□□□□□ -1.04
CD44-207ENST00000425428 ASPHD2Q6ICH7 369 aa8.53□□□□□ -1.04
CD44-207ENST00000425428 WDR82Q6UXN9 313 aa8.53□□□□□ -1.04
CD44-207ENST00000425428 LINC00596Q86U02 117 aa8.53□□□□□ -1.04
CD44-207ENST00000425428 CDH24Q86UP0 819 aa8.53□□□□□ -1.04
CD44-207ENST00000425428 OSR2Q8N2R0 312 aa8.53□□□□□ -1.04
CD44-207ENST00000425428 OR51T1Q8NGJ9 327 aa8.53□□□□□ -1.04
CD44-207ENST00000425428 MCFD2Q8NI22 146 aa8.53□□□□□ -1.04
CD44-207ENST00000425428 PPP1R35Q8TAP8 253 aa8.53□□□□□ -1.04
CD44-207ENST00000425428 PERPQ96FX8 193 aa8.53□□□□□ -1.04
CD44-207ENST00000425428 POM121Q96HA1 1249 aa8.53□□□□□ -1.04
CD44-207ENST00000425428 C6orf62Q9GZU0 229 aaPredicted RBP8.53□□□□□ -1.04
CD44-207ENST00000425428 PCDHB10Q9UN67 800 aa8.53□□□□□ -1.04
CD44-207ENST00000425428 PPIAL4AQ9Y536 164 aa8.53□□□□□ -1.04
CD44-207ENST00000425428 USF3Q68DE3 2245 aa8.53□□□□□ -1.04
CD44-207ENST00000425428 IGKV1-27A0A075B6S5 117 aa8.53□□□□□ -1.04
CD44-207ENST00000425428 FAM25AB3EWG3 89 aa8.53□□□□□ -1.04
CD44-207ENST00000425428 FAM25CB3EWG5 89 aa8.53□□□□□ -1.04
CD44-207ENST00000425428 FAM25GB3EWG6 89 aa8.53□□□□□ -1.04
CD44-207ENST00000425428 NDUFS8O00217 210 aa8.53□□□□□ -1.04
CD44-207ENST00000425428 AKR7A2O43488 359 aa8.53□□□□□ -1.04
CD44-207ENST00000425428 NOS1APO75052 506 aaPredicted RBP8.53□□□□□ -1.04
CD44-207ENST00000425428 MPIG6BO95866 241 aa8.53□□□□□ -1.04
CD44-207ENST00000425428 MUC1P15941 1255 aaPredicted RBP8.53□□□□□ -1.04
CD44-207ENST00000425428 RAB6AP20340 208 aa8.53□□□□□ -1.04
CD44-207ENST00000425428 BCL3P20749 454 aa8.53□□□□□ -1.04
CD44-207ENST00000425428 CPT2P23786 658 aa8.53□□□□□ -1.04
CD44-207ENST00000425428 CFPP27918 469 aa8.53□□□□□ -1.04
CD44-207ENST00000425428 GPR6P46095 362 aaPredicted RBP8.53□□□□□ -1.04
CD44-207ENST00000425428 PTH2RP49190 550 aa8.53□□□□□ -1.04
CD44-207ENST00000425428 CAV3P56539 151 aa8.53□□□□□ -1.04
CD44-207ENST00000425428 ZP1P60852 638 aa8.53□□□□□ -1.04
CD44-207ENST00000425428 MRPS15P82914 257 aaKnown RBP8.53□□□□□ -1.04
CD44-207ENST00000425428 ARL6IP1Q15041 203 aa8.53□□□□□ -1.04
CD44-207ENST00000425428 C2orf76Q3KRA6 126 aa8.53□□□□□ -1.04
CD44-207ENST00000425428 ZNF404Q494X3 552 aa8.53□□□□□ -1.04
CD44-207ENST00000425428 SPIN3Q5JUX0 258 aa8.53□□□□□ -1.04
CD44-207ENST00000425428 ZNF826PQ6ZT77 177 aa8.53□□□□□ -1.04
CD44-207ENST00000425428 OR51D1Q8NGF3 324 aa8.53□□□□□ -1.04
CD44-207ENST00000425428 OR4D6Q8NGJ1 314 aa8.53□□□□□ -1.04
CD44-207ENST00000425428 DYNC2LI1Q8TCX1 351 aa8.53□□□□□ -1.04
CD44-207ENST00000425428 FAM46BQ96A09 425 aa8.53□□□□□ -1.04
CD44-207ENST00000425428 PTX4Q96A99 478 aa8.53□□□□□ -1.04
CD44-207ENST00000425428 S100A16Q96FQ6 103 aaKnown RBP8.53□□□□□ -1.04
CD44-207ENST00000425428 CMTM3Q96MX0 182 aa8.53□□□□□ -1.04
CD44-207ENST00000425428 PIMREGQ9BSJ6 248 aa8.53□□□□□ -1.04
CD44-207ENST00000425428 GSX2Q9BZM3 304 aa8.53□□□□□ -1.04
CD44-207ENST00000425428 SELENOIQ9C0D9 397 aa8.53□□□□□ -1.04
CD44-207ENST00000425428 MMP27Q9H306 513 aa8.53□□□□□ -1.04
CD44-207ENST00000425428 SPACA1Q9HBV2 294 aa8.53□□□□□ -1.04
CD44-207ENST00000425428 DIABLOQ9NR28 239 aa8.53□□□□□ -1.04
CD44-207ENST00000425428 TREM2Q9NZC2 230 aa8.53□□□□□ -1.04
CD44-207ENST00000425428 COMMD3Q9UBI1 195 aa8.53□□□□□ -1.04
CD44-207ENST00000425428 SPATA2Q9UM82 520 aa8.53□□□□□ -1.04
CD44-207ENST00000425428 PTPN13Q12923 2485 aa8.53□□□□□ -1.04
CD44-207ENST00000425428 SHISA3A0PJX4 238 aa8.52□□□□□ -1.05
CD44-207ENST00000425428 OOEPA6NGQ2 149 aa8.52□□□□□ -1.05
CD44-207ENST00000425428 SRRM5B3KS81 715 aa8.52□□□□□ -1.05
CD44-207ENST00000425428 TMEM178BH3BS89 294 aa8.52□□□□□ -1.05
CD44-207ENST00000425428 SYNGR1O43759 233 aa8.52□□□□□ -1.05
CD44-207ENST00000425428 CYB5R3P00387 301 aaPredicted RBP8.52□□□□□ -1.05
CD44-207ENST00000425428 MGMTP16455 207 aa8.52□□□□□ -1.05
CD44-207ENST00000425428 GABRA2P47869 451 aa8.52□□□□□ -1.05
CD44-207ENST00000425428 CLDN12P56749 244 aa8.52□□□□□ -1.05
CD44-207ENST00000425428 FGF12P61328 243 aa8.52□□□□□ -1.05
CD44-207ENST00000425428 DEFB113Q30KQ7 82 aa8.52□□□□□ -1.05
CD44-207ENST00000425428 UBE2NLQ5JXB2 153 aa8.52□□□□□ -1.05
CD44-207ENST00000425428 HIST2H2BCQ6DN03 193 aa8.52□□□□□ -1.05
CD44-207ENST00000425428 ELP2Q6IA86 826 aa8.52□□□□□ -1.05
CD44-207ENST00000425428 RAB12Q6IQ22 244 aa8.52□□□□□ -1.05
CD44-207ENST00000425428 SLC36A1Q7Z2H8 476 aa8.52□□□□□ -1.05
CD44-207ENST00000425428 WDR86Q86TI4 376 aa8.52□□□□□ -1.05
CD44-207ENST00000425428 LRRC75A-AS1Q8N1F1 130 aa8.52□□□□□ -1.05
CD44-207ENST00000425428 SPICQ8N5J4 248 aa8.52□□□□□ -1.05
CD44-207ENST00000425428 OR56B1Q8NGI3 324 aa8.52□□□□□ -1.05
CD44-207ENST00000425428 RAB40AQ8WXH6 277 aa8.52□□□□□ -1.05
CD44-207ENST00000425428 FAM168AQ92567 244 aa8.52□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 83.8 ms