RNA–Protein interactions for RNA: YPR056W

TFB4, Transcript of Subunit of TFIIH complex, yeast

Gene TFB4, Length 1,017 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
TFB4	YPR056W	QRI7	P43122	407 aa		6.65	□□□□□ -1.34
TFB4	YPR056W	MAP1	Q01662	387 aa	Known RBP RIP-Chip data	6.65	□□□□□ -1.34	not detected
TFB4	YPR056W	ROT1	Q03691	256 aa		6.65	□□□□□ -1.34
TFB4	YPR056W	SES1	P07284	462 aa	Known RBP	6.64	□□□□□ -1.35
TFB4	YPR056W	INO1	P11986	533 aa		6.64	□□□□□ -1.35
TFB4	YPR056W	MUD2	P36084	527 aa	Known RBP	6.64	□□□□□ -1.35
TFB4	YPR056W	NPR3	P38742	1146 aa		6.64	□□□□□ -1.35
TFB4	YPR056W	CKB2	P38930	258 aa		6.64	□□□□□ -1.35
TFB4	YPR056W	SAH1	P39954	449 aa	Known RBP	6.64	□□□□□ -1.35
TFB4	YPR056W	MRPL19	P53875	158 aa		6.64	□□□□□ -1.35
TFB4	YPR056W	MSC2	Q03455	724 aa		6.64	□□□□□ -1.35
TFB4	YPR056W	ARA2	Q04212	335 aa		6.64	□□□□□ -1.35
TFB4	YPR056W	TAF11	Q04226	346 aa		6.64	□□□□□ -1.35
TFB4	YPR056W	TDA9	Q04545	1251 aa		6.64	□□□□□ -1.35
TFB4	YPR056W	BLS1	Q06071	122 aa		6.64	□□□□□ -1.35
TFB4	YPR056W	RXT3	Q07458	294 aa		6.64	□□□□□ -1.35
TFB4	YPR056W	SAC3	P46674	1301 aa		6.64	□□□□□ -1.35
TFB4	YPR056W	STF1	P01098	86 aa		6.63	□□□□□ -1.35
TFB4	YPR056W	BI4	P03879	638 aa		6.63	□□□□□ -1.35
TFB4	YPR056W	CDC9	P04819	755 aa		6.63	□□□□□ -1.35
TFB4	YPR056W	RED1	P14291	827 aa		6.63	□□□□□ -1.35
TFB4	YPR056W	GLK1	P17709	500 aa	Known RBP	6.63	□□□□□ -1.35
TFB4	YPR056W	AAC3	P18238	307 aa		6.63	□□□□□ -1.35
TFB4	YPR056W	SFL1	P20134	766 aa		6.63	□□□□□ -1.35
TFB4	YPR056W	SUI2	P20459	304 aa	Known RBP	6.63	□□□□□ -1.35
TFB4	YPR056W	HEM12	P32347	362 aa	Predicted RBP	6.63	□□□□□ -1.35
TFB4	YPR056W	PAH1	P32567	862 aa		6.63	□□□□□ -1.35
TFB4	YPR056W	BIT2	P38346	545 aa		6.63	□□□□□ -1.35
TFB4	YPR056W	UPF3	P48412	387 aa	Known RBP	6.63	□□□□□ -1.35
TFB4	YPR056W	BNI5	P53890	448 aa	Known RBP	6.63	□□□□□ -1.35
TFB4	YPR056W	SYF1	Q04048	859 aa	Predicted RBP	6.63	□□□□□ -1.35
TFB4	YPR056W	GSF2	Q04697	403 aa	Known RBP	6.63	□□□□□ -1.35
TFB4	YPR056W	APC5	Q08683	685 aa		6.63	□□□□□ -1.35
TFB4	YPR056W	TAH18	Q12181	623 aa		6.63	□□□□□ -1.35
TFB4	YPR056W	RAD51	P25454	400 aa		6.62	□□□□□ -1.35
TFB4	YPR056W	PCL2	P25693	308 aa		6.62	□□□□□ -1.35
TFB4	YPR056W	CMK1	P27466	446 aa	Known RBP	6.62	□□□□□ -1.35
TFB4	YPR056W	HBS1	P32769	611 aa	Known RBP	6.62	□□□□□ -1.35
TFB4	YPR056W	ORC2	P32833	620 aa		6.62	□□□□□ -1.35
TFB4	YPR056W	YEL1	P34225	687 aa		6.62	□□□□□ -1.35
TFB4	YPR056W	YKL107W	P34251	309 aa		6.62	□□□□□ -1.35
TFB4	YPR056W	SIT1	P39980	628 aa		6.62	□□□□□ -1.35
TFB4	YPR056W	NOP16	P40007	231 aa	Known RBP	6.62	□□□□□ -1.35
TFB4	YPR056W	GZF3	P42944	551 aa	Known RBP	6.62	□□□□□ -1.35
TFB4	YPR056W	YAP1802	P53309	568 aa		6.62	□□□□□ -1.35
TFB4	YPR056W	CIA1	Q05583	330 aa		6.62	□□□□□ -1.35
TFB4	YPR056W	ACK1	Q07622	623 aa	Predicted RBP	6.62	□□□□□ -1.35
TFB4	YPR056W	VTS1	Q08831	523 aa	Known RBP RIP-Chip data	6.62	□□□□□ -1.35	RIP-Chip
TFB4	YPR056W	YPL066W	Q12194	479 aa		6.62	□□□□□ -1.35
TFB4	YPR056W	CDC6	P09119	513 aa		6.61	□□□□□ -1.35
TFB4	YPR056W	SEC18	P18759	758 aa	Known RBP	6.61	□□□□□ -1.35
TFB4	YPR056W	RPC53	P25441	422 aa		6.61	□□□□□ -1.35
TFB4	YPR056W	CDC20	P26309	610 aa		6.61	□□□□□ -1.35
TFB4	YPR056W	YBR284W	P38150	797 aa		6.61	□□□□□ -1.35
TFB4	YPR056W	MBP1	P39678	833 aa		6.61	□□□□□ -1.35
TFB4	YPR056W	RAD26	P40352	1085 aa		6.61	□□□□□ -1.35
TFB4	YPR056W	UBP6	P43593	499 aa	Known RBP	6.61	□□□□□ -1.35
TFB4	YPR056W	SET2	P46995	733 aa	Known RBP	6.61	□□□□□ -1.35
TFB4	YPR056W	PCL10	P53124	433 aa		6.61	□□□□□ -1.35
TFB4	YPR056W	TIM50	Q02776	476 aa		6.61	□□□□□ -1.35
TFB4	YPR056W	YPR172W	Q06608	200 aa		6.61	□□□□□ -1.35
TFB4	YPR056W	GUD1	Q07729	489 aa		6.61	□□□□□ -1.35
TFB4	YPR056W	ADY3	Q07732	790 aa		6.61	□□□□□ -1.35
TFB4	YPR056W	GPB1	Q08886	897 aa		6.61	□□□□□ -1.35
TFB4	YPR056W	YLL058W	Q12198	575 aa		6.61	□□□□□ -1.35
TFB4	YPR056W	GFA1	P14742	717 aa	Known RBP	6.6	□□□□□ -1.35
TFB4	YPR056W	MET8	P15807	274 aa		6.6	□□□□□ -1.35
TFB4	YPR056W	DAL7	P21826	554 aa		6.6	□□□□□ -1.35
TFB4	YPR056W	STE11	P23561	717 aa		6.6	□□□□□ -1.35
TFB4	YPR056W	CTS1	P29029	562 aa		6.6	□□□□□ -1.35
TFB4	YPR056W	IME2	P32581	645 aa		6.6	□□□□□ -1.35
TFB4	YPR056W	PIN4	P34217	668 aa	Known RBP RIP-Chip data	6.6	□□□□□ -1.35	not detected
TFB4	YPR056W	MPT5	P39016	859 aa	Known RBP RIP-Chip data	6.6	□□□□□ -1.35	not detected
TFB4	YPR056W	EMP65	P40085	556 aa		6.6	□□□□□ -1.35
TFB4	YPR056W	AXL1	P40851	1208 aa		6.6	□□□□□ -1.35
TFB4	YPR056W	IRC6	P43615	237 aa		6.6	□□□□□ -1.35
TFB4	YPR056W	YGL176C	P46945	554 aa		6.6	□□□□□ -1.35
TFB4	YPR056W	MNN11	P46985	422 aa	Known RBP	6.6	□□□□□ -1.35
TFB4	YPR056W	OCA1	P50946	238 aa	Predicted RBP	6.6	□□□□□ -1.35
TFB4	YPR056W	VPS62	P53285	467 aa		6.6	□□□□□ -1.35
TFB4	YPR056W	NCS2	P53923	493 aa	Predicted RBP	6.6	□□□□□ -1.35
TFB4	YPR056W	HIM1	Q06674	414 aa		6.6	□□□□□ -1.35
TFB4	YPR056W	SMF3	Q12078	473 aa	Predicted RBP	6.6	□□□□□ -1.35
TFB4	YPR056W	YOL114C	Q12322	202 aa		6.6	□□□□□ -1.35
TFB4	YPR056W	COX11	P19516	300 aa	Known RBP	6.59	□□□□□ -1.35
TFB4	YPR056W	TRX1	P22217	103 aa	Known RBP	6.59	□□□□□ -1.35
TFB4	YPR056W	CDC48	P25694	835 aa	Known RBP	6.59	□□□□□ -1.35
TFB4	YPR056W	DBF4	P32325	704 aa		6.59	□□□□□ -1.35
TFB4	YPR056W	ESL2	P36168	1195 aa		6.59	□□□□□ -1.35
TFB4	YPR056W	SHM2	P37291	469 aa	Known RBP	6.59	□□□□□ -1.35
TFB4	YPR056W	TPA1	P40032	644 aa	Known RBP	6.59	□□□□□ -1.35
TFB4	YPR056W	SIP5	P40210	489 aa	Known RBP	6.59	□□□□□ -1.35
TFB4	YPR056W	RNR4	P49723	345 aa	Known RBP	6.59	□□□□□ -1.35
TFB4	YPR056W	MTC3	P53077	123 aa		6.59	□□□□□ -1.35
TFB4	YPR056W	SLD3	P53135	668 aa		6.59	□□□□□ -1.35
TFB4	YPR056W	TIM10	P87108	93 aa		6.59	□□□□□ -1.35
TFB4	YPR056W	PTA1	Q01329	785 aa	Predicted RBP	6.59	□□□□□ -1.35
TFB4	YPR056W	LAP3	Q01532	483 aa	Known RBP RIP-Chip data	6.59	□□□□□ -1.35	not detected
TFB4	YPR056W	PEX15	Q08215	383 aa		6.59	□□□□□ -1.35
TFB4	YPR056W	TUF1	P02992	437 aa	Known RBP	6.58	□□□□□ -1.36

Retrieved 100 of 5,963 RNA–protein pairs in 47.9 ms