RNA–Protein interactions for RNA: YFR010W

UBP6, Transcript of Ubiquitin-specific protease, yeast

Gene UBP6, Length 1,500 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBP6	YFR010W	SMD2	Q06217	110 aa	Known RBP	4.46	□□□□□ -1.69
UBP6	YFR010W	PDX1	P16451	410 aa		4.46	□□□□□ -1.7
UBP6	YFR010W	PFK1	P16861	987 aa	Known RBP	4.46	□□□□□ -1.7
UBP6	YFR010W	VBA3	P25594	458 aa		4.46	□□□□□ -1.7
UBP6	YFR010W	FUN30	P31380	1131 aa		4.46	□□□□□ -1.7
UBP6	YFR010W	DBF4	P32325	704 aa		4.46	□□□□□ -1.7
UBP6	YFR010W	PIN4	P34217	668 aa	Known RBP RIP-Chip data	4.46	□□□□□ -1.7	not detected
UBP6	YFR010W	LRG1	P35688	1017 aa		4.46	□□□□□ -1.7
UBP6	YFR010W	ADD66	P36040	267 aa		4.46	□□□□□ -1.7
UBP6	YFR010W	MIC60	P36112	540 aa		4.46	□□□□□ -1.7
UBP6	YFR010W	CCL1	P37366	393 aa		4.46	□□□□□ -1.7
UBP6	YFR010W	POL12	P38121	705 aa	Predicted RBP	4.46	□□□□□ -1.7
UBP6	YFR010W	FTH1	P38310	465 aa		4.46	□□□□□ -1.7
UBP6	YFR010W	SPC72	P39723	622 aa		4.46	□□□□□ -1.7
UBP6	YFR010W	YER034W	P40022	185 aa	Known RBP	4.46	□□□□□ -1.7
UBP6	YFR010W	ARB1	P40024	610 aa	Known RBP	4.46	□□□□□ -1.7
UBP6	YFR010W	AGX1	P43567	385 aa		4.46	□□□□□ -1.7
UBP6	YFR010W	BUD27	P43573	796 aa	Known RBP RIP-Chip data	4.46	□□□□□ -1.7	not detected
UBP6	YFR010W	FYV8	P46949	817 aa	Known RBP	4.46	□□□□□ -1.7
UBP6	YFR010W	YJR096W	P47137	282 aa		4.46	□□□□□ -1.7
UBP6	YFR010W	PCL10	P53124	433 aa		4.46	□□□□□ -1.7
UBP6	YFR010W	MET13	P53128	600 aa		4.46	□□□□□ -1.7
UBP6	YFR010W	MNP1	P53163	194 aa	Predicted RBP	4.46	□□□□□ -1.7
UBP6	YFR010W	YGR250C	P53316	781 aa	Known RBP	4.46	□□□□□ -1.7
UBP6	YFR010W	SSY1	Q03770	852 aa		4.46	□□□□□ -1.7
UBP6	YFR010W	RKM2	Q03942	479 aa		4.46	□□□□□ -1.7
UBP6	YFR010W	TRP2	P00899	507 aa	Known RBP	4.45	□□□□□ -1.7
UBP6	YFR010W	PMS1	P14242	873 aa		4.45	□□□□□ -1.7
UBP6	YFR010W	GFA1	P14742	717 aa	Known RBP	4.45	□□□□□ -1.7
UBP6	YFR010W	GSY1	P23337	708 aa		4.45	□□□□□ -1.7
UBP6	YFR010W	ADP1	P25371	1049 aa		4.45	□□□□□ -1.7
UBP6	YFR010W	PRO1	P32264	428 aa		4.45	□□□□□ -1.7
UBP6	YFR010W	HEM12	P32347	362 aa	Predicted RBP	4.45	□□□□□ -1.7
UBP6	YFR010W	CBF2	P32504	956 aa		4.45	□□□□□ -1.7
UBP6	YFR010W	PPQ1	P32945	549 aa		4.45	□□□□□ -1.7
UBP6	YFR010W	MTH1	P35198	433 aa		4.45	□□□□□ -1.7
UBP6	YFR010W	TIF5	P38431	405 aa	Known RBP	4.45	□□□□□ -1.7
UBP6	YFR010W	OAF1	P39720	1047 aa	Predicted RBP	4.45	□□□□□ -1.7
UBP6	YFR010W	KAP123	P40069	1113 aa	Known RBP	4.45	□□□□□ -1.7
UBP6	YFR010W	FMP10	P40098	244 aa		4.45	□□□□□ -1.7
UBP6	YFR010W	VPS53	P47061	822 aa		4.45	□□□□□ -1.7
UBP6	YFR010W	BLS1	Q06071	122 aa		4.45	□□□□□ -1.7
UBP6	YFR010W	UTP21	Q06078	939 aa	Predicted RBP	4.45	□□□□□ -1.7
UBP6	YFR010W	MLH2	Q07980	695 aa		4.45	□□□□□ -1.7
UBP6	YFR010W	HRK1	Q08732	759 aa	Known RBP	4.45	□□□□□ -1.7
UBP6	YFR010W	BMS1	Q08965	1183 aa	Known RBP	4.45	□□□□□ -1.7
UBP6	YFR010W	YTM1	Q12024	460 aa	Predicted RBP	4.45	□□□□□ -1.7
UBP6	YFR010W	DFG16	Q99234	619 aa		4.45	□□□□□ -1.7
UBP6	YFR010W	RPB4	P20433	221 aa	Predicted RBP	4.44	□□□□□ -1.7
UBP6	YFR010W	DAL7	P21826	554 aa		4.44	□□□□□ -1.7
UBP6	YFR010W	SEC21	P32074	935 aa	Known RBP	4.44	□□□□□ -1.7
UBP6	YFR010W	DAL3	P32459	195 aa		4.44	□□□□□ -1.7
UBP6	YFR010W	PRP19	P32523	503 aa	Known RBP	4.44	□□□□□ -1.7
UBP6	YFR010W	RPN2	P32565	945 aa	Known RBP	4.44	□□□□□ -1.7
UBP6	YFR010W	AFG2	P32794	780 aa		4.44	□□□□□ -1.7
UBP6	YFR010W	ELM1	P32801	640 aa		4.44	□□□□□ -1.7
UBP6	YFR010W	SEG2	P34250	1132 aa		4.44	□□□□□ -1.7
UBP6	YFR010W	MCM7	P38132	845 aa		4.44	□□□□□ -1.7
UBP6	YFR010W	YLF2	P38746	405 aa		4.44	□□□□□ -1.7
UBP6	YFR010W	SPT8	P38915	602 aa		4.44	□□□□□ -1.7
UBP6	YFR010W	CCC2	P38995	1004 aa		4.44	□□□□□ -1.7
UBP6	YFR010W	LSM5	P40089	93 aa	Known RBP	4.44	□□□□□ -1.7
UBP6	YFR010W	RIC1	P40395	1056 aa		4.44	□□□□□ -1.7
UBP6	YFR010W	SKP2	P42843	763 aa		4.44	□□□□□ -1.7
UBP6	YFR010W	POL31	P46957	487 aa		4.44	□□□□□ -1.7
UBP6	YFR010W	YJL045W	P47052	634 aa		4.44	□□□□□ -1.7
UBP6	YFR010W	GNP1	P48813	663 aa		4.44	□□□□□ -1.7
UBP6	YFR010W	FOL2	P51601	243 aa	Known RBP	4.44	□□□□□ -1.7
UBP6	YFR010W	SIW14	P53965	281 aa		4.44	□□□□□ -1.7
UBP6	YFR010W	VPS9	P54787	451 aa		4.44	□□□□□ -1.7
UBP6	YFR010W	ERV25	P54837	211 aa	Known RBP	4.44	□□□□□ -1.7
UBP6	YFR010W	EST2	Q06163	884 aa		4.44	□□□□□ -1.7
UBP6	YFR010W	HDA2	Q06629	674 aa		4.44	□□□□□ -1.7
UBP6	YFR010W	APL4	Q12028	832 aa		4.44	□□□□□ -1.7
UBP6	YFR010W	YRM1	Q12340	786 aa		4.44	□□□□□ -1.7
UBP6	YFR010W	RMP1	Q12530	201 aa		4.44	□□□□□ -1.7
UBP6	YFR010W	PGA3	Q12746	312 aa	Known RBP	4.44	□□□□□ -1.7
UBP6	YFR010W	DED1	P06634	604 aa	Known RBP	4.43	□□□□□ -1.7
UBP6	YFR010W	RPB2	P08518	1224 aa	Known RBP	4.43	□□□□□ -1.7
UBP6	YFR010W	CBP3	P21560	335 aa		4.43	□□□□□ -1.7
UBP6	YFR010W	MCM3	P24279	971 aa	Known RBP	4.43	□□□□□ -1.7
UBP6	YFR010W	PCL2	P25693	308 aa		4.43	□□□□□ -1.7
UBP6	YFR010W	MDL1	P33310	695 aa		4.43	□□□□□ -1.7
UBP6	YFR010W	RFC1	P38630	861 aa	Known RBP	4.43	□□□□□ -1.7
UBP6	YFR010W	QNS1	P38795	714 aa	Known RBP	4.43	□□□□□ -1.7
UBP6	YFR010W	PTC7	P38797	343 aa		4.43	□□□□□ -1.7
UBP6	YFR010W	CTM1	P38818	585 aa		4.43	□□□□□ -1.7
UBP6	YFR010W	PEX18	P38855	283 aa		4.43	□□□□□ -1.7
UBP6	YFR010W	VHR1	P40522	640 aa		4.43	□□□□□ -1.7
UBP6	YFR010W	RMD8	P43620	662 aa		4.43	□□□□□ -1.7
UBP6	YFR010W	MAD3	P47074	515 aa		4.43	□□□□□ -1.7
UBP6	YFR010W	NFI1	Q12216	726 aa		4.43	□□□□□ -1.7
UBP6	YFR010W	LPX1	Q12405	387 aa	Known RBP	4.43	□□□□□ -1.7
UBP6	YFR010W	RKM4	Q12504	494 aa		4.43	□□□□□ -1.7
UBP6	YFR010W	HBN1	Q96VH4	193 aa		4.43	□□□□□ -1.7
UBP6	YFR010W	SEM1	O94742	89 aa		4.42	□□□□□ -1.7
UBP6	YFR010W	SRD1	P09007	221 aa		4.42	□□□□□ -1.7
UBP6	YFR010W	TOP3	P13099	656 aa		4.42	□□□□□ -1.7
UBP6	YFR010W	SAM35	P14693	329 aa		4.42	□□□□□ -1.7
UBP6	YFR010W	KAR3	P17119	729 aa		4.42	□□□□□ -1.7

Retrieved 100 of 5,963 RNA–protein pairs in 17.3 ms