RNA–Protein interactions for RNA: YFR004W

RPN11, Transcript of Metalloprotease subunit of 19S regulatory particle, yeastyeast

Gene RPN11, Length 921 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RPN11YFR004W ESL1P40456 1118 aa6.49□□□□□ -1.37
RPN11YFR004W UTP5Q04177 643 aaKnown RBP6.49□□□□□ -1.37
RPN11YFR004W CRD1Q07560 283 aa6.49□□□□□ -1.37
RPN11YFR004W ALR1Q08269 859 aa6.49□□□□□ -1.37
RPN11YFR004W FOB1O13329 566 aa6.48□□□□□ -1.37
RPN11YFR004W YEL076C-AP0CX16 216 aa6.48□□□□□ -1.37
RPN11YFR004W YLR464WP0CX17 216 aa6.48□□□□□ -1.37
RPN11YFR004W BET2P20133 325 aa6.48□□□□□ -1.37
RPN11YFR004W PAP1P29468 568 aaKnown RBP6.48□□□□□ -1.37
RPN11YFR004W XRS2P33301 854 aa6.48□□□□□ -1.37
RPN11YFR004W YEL076CP39971 216 aa6.48□□□□□ -1.37
RPN11YFR004W MOB1P40484 314 aa6.48□□□□□ -1.37
RPN11YFR004W GUP1P53154 560 aa6.48□□□□□ -1.37
RPN11YFR004W KXD1P53158 218 aa6.48□□□□□ -1.37
RPN11YFR004W MAL13P53338 473 aa6.48□□□□□ -1.37
RPN11YFR004W YNL134CP53912 376 aaKnown RBP6.48□□□□□ -1.37
RPN11YFR004W GYL1Q04322 720 aa6.48□□□□□ -1.37
RPN11YFR004W CBC2Q08920 208 aaKnown RBP RIP-Chip data6.48□□□□□ -1.37not detected
RPN11YFR004W NEW1Q08972 1196 aaKnown RBP6.48□□□□□ -1.37
RPN11YFR004W OSH2Q12451 1283 aa6.48□□□□□ -1.37
RPN11YFR004W PCD1Q12524 340 aa6.48□□□□□ -1.37
RPN11YFR004W SMC6Q12749 1114 aa6.48□□□□□ -1.37
RPN11YFR004W SEN1Q00416 2231 aaKnown RBP6.48□□□□□ -1.37
RPN11YFR004W ILV1P00927 576 aaKnown RBP6.47□□□□□ -1.37
RPN11YFR004W CAN1P04817 590 aa6.47□□□□□ -1.37
RPN11YFR004W PHO4P07270 312 aaKnown RBP6.47□□□□□ -1.37
RPN11YFR004W ADE2P21264 571 aaKnown RBP6.47□□□□□ -1.37
RPN11YFR004W ISY1P21374 235 aaPredicted RBP6.47□□□□□ -1.37
RPN11YFR004W RPC53P25441 422 aa6.47□□□□□ -1.37
RPN11YFR004W SRO9P25567 434 aaKnown RBP6.47□□□□□ -1.37
RPN11YFR004W SRB4P32569 687 aa6.47□□□□□ -1.37
RPN11YFR004W YEL043WP32618 956 aa6.47□□□□□ -1.37
RPN11YFR004W HXT5P38695 592 aa6.47□□□□□ -1.37
RPN11YFR004W PIH1P38768 344 aa6.47□□□□□ -1.37
RPN11YFR004W GPD2P41911 440 aaKnown RBP6.47□□□□□ -1.37
RPN11YFR004W CNM67P53865 581 aaKnown RBP6.47□□□□□ -1.37
RPN11YFR004W SOV1Q04748 898 aa6.47□□□□□ -1.37
RPN11YFR004W HIF1Q12373 385 aa6.47□□□□□ -1.37
RPN11YFR004W SNF1P06782 633 aaKnown RBP6.46□□□□□ -1.38
RPN11YFR004W TUP1P16649 713 aa6.46□□□□□ -1.38
RPN11YFR004W CKA2P19454 339 aa6.46□□□□□ -1.38
RPN11YFR004W VAC17P25591 423 aa6.46□□□□□ -1.38
RPN11YFR004W SEC21P32074 935 aaKnown RBP6.46□□□□□ -1.38
RPN11YFR004W RRP1P35178 278 aaPredicted RBP6.46□□□□□ -1.38
RPN11YFR004W GDT1P38301 280 aaPredicted RBP6.46□□□□□ -1.38
RPN11YFR004W ARP1P38696 384 aa6.46□□□□□ -1.38
RPN11YFR004W YHR202WP38887 602 aa6.46□□□□□ -1.38
RPN11YFR004W VPS41P38959 992 aa6.46□□□□□ -1.38
RPN11YFR004W BIO5P53744 561 aaKnown RBP6.46□□□□□ -1.38
RPN11YFR004W PGA2P53903 129 aa6.46□□□□□ -1.38
RPN11YFR004W MRS2Q01926 470 aa6.46□□□□□ -1.38
RPN11YFR004W HFI1Q12060 488 aa6.46□□□□□ -1.38
RPN11YFR004W SSB1P11484 613 aaKnown RBP6.45□□□□□ -1.38
RPN11YFR004W GFA1P14742 717 aaKnown RBP6.45□□□□□ -1.38
RPN11YFR004W APE1P14904 514 aa6.45□□□□□ -1.38
RPN11YFR004W CKI1P20485 582 aa6.45□□□□□ -1.38
RPN11YFR004W DEP1P31385 405 aa6.45□□□□□ -1.38
RPN11YFR004W ECM32P32644 1121 aaKnown RBP6.45□□□□□ -1.38
RPN11YFR004W NIP100P33420 868 aa6.45□□□□□ -1.38
RPN11YFR004W BYE1P36106 594 aa6.45□□□□□ -1.38
RPN11YFR004W JNM1P36224 373 aa6.45□□□□□ -1.38
RPN11YFR004W SIP3P38717 1229 aa6.45□□□□□ -1.38
RPN11YFR004W PEX28P38848 579 aa6.45□□□□□ -1.38
RPN11YFR004W SMC2P38989 1170 aaKnown RBP6.45□□□□□ -1.38
RPN11YFR004W YMR124WP39523 943 aaKnown RBP6.45□□□□□ -1.38
RPN11YFR004W VAC8P39968 578 aa6.45□□□□□ -1.38
RPN11YFR004W SSB2P40150 613 aaKnown RBP6.45□□□□□ -1.38
RPN11YFR004W YFL034WP43564 1073 aa6.45□□□□□ -1.38
RPN11YFR004W MIC19P43594 170 aa6.45□□□□□ -1.38
RPN11YFR004W SMC3P47037 1230 aa6.45□□□□□ -1.38
RPN11YFR004W JJJ3P47138 172 aa6.45□□□□□ -1.38
RPN11YFR004W CCM1P48237 864 aaPredicted RBP6.45□□□□□ -1.38
RPN11YFR004W ALT2P52892 507 aa6.45□□□□□ -1.38
RPN11YFR004W TAD1P53065 400 aa6.45□□□□□ -1.38
RPN11YFR004W RNH70P53331 553 aa6.45□□□□□ -1.38
RPN11YFR004W MFM1Q02783 413 aa6.45□□□□□ -1.38
RPN11YFR004W NGL3Q03210 505 aa6.45□□□□□ -1.38
RPN11YFR004W COQ9Q05779 260 aa6.45□□□□□ -1.38
RPN11YFR004W OPY2Q06810 360 aa6.45□□□□□ -1.38
RPN11YFR004W SCP160P06105 1222 aaKnown RBP RIP-Chip data6.44□□□□□ -1.38not detected
RPN11YFR004W DED1P06634 604 aaKnown RBP6.44□□□□□ -1.38
RPN11YFR004W WHI2P12611 486 aa6.44□□□□□ -1.38
RPN11YFR004W PFK1P16861 987 aaKnown RBP6.44□□□□□ -1.38
RPN11YFR004W DAL7P21826 554 aa6.44□□□□□ -1.38
RPN11YFR004W CLB1P24868 471 aa6.44□□□□□ -1.38
RPN11YFR004W PUP3P25451 205 aaKnown RBP6.44□□□□□ -1.38
RPN11YFR004W CDC48P25694 835 aaKnown RBP6.44□□□□□ -1.38
RPN11YFR004W MSH1P25846 959 aa6.44□□□□□ -1.38
RPN11YFR004W SMC1P32908 1225 aa6.44□□□□□ -1.38
RPN11YFR004W PGM1P33401 570 aaKnown RBP6.44□□□□□ -1.38
RPN11YFR004W YKL097CP34245 136 aa6.44□□□□□ -1.38
RPN11YFR004W RGD1P38339 666 aa6.44□□□□□ -1.38
RPN11YFR004W RIM4P38741 713 aa6.44□□□□□ -1.38
RPN11YFR004W SET5P38890 526 aaKnown RBP6.44□□□□□ -1.38
RPN11YFR004W UBP5P39944 805 aa6.44□□□□□ -1.38
RPN11YFR004W ULP2P40537 1034 aaPredicted RBP6.44□□□□□ -1.38
RPN11YFR004W MMM1P41800 426 aa6.44□□□□□ -1.38
RPN11YFR004W NBP1P52919 319 aaPredicted RBP6.44□□□□□ -1.38
RPN11YFR004W YMR114CQ04471 368 aaKnown RBP6.44□□□□□ -1.38
RPN11YFR004W ISR1Q06098 443 aaKnown RBP6.44□□□□□ -1.38
Retrieved 100 of 5,963 RNA–protein pairs in 11.2 ms