RNA–Protein interactions for RNA: YCR093W

CDC39, Transcript of Component of the CCR4-NOT1 core complex, yeastyeast

Gene CDC39, Length 6,327 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CDC39YCR093W FLR1P38124 548 aa1.41□□□□□ -2.18
CDC39YCR093W TOS1P38288 455 aa1.41□□□□□ -2.18
CDC39YCR093W NUG1P40010 520 aaKnown RBP1.41□□□□□ -2.18
CDC39YCR093W ARP4P80428 489 aa1.41□□□□□ -2.18
CDC39YCR093W NSE5Q03718 556 aa1.41□□□□□ -2.18
CDC39YCR093W PEX19Q07418 342 aa1.41□□□□□ -2.18
CDC39YCR093W DMC1P25453 334 aa1.41□□□□□ -2.18
CDC39YCR093W PWP2P25635 923 aaKnown RBP1.41□□□□□ -2.18
CDC39YCR093W PRY1P47032 299 aa1.41□□□□□ -2.18
CDC39YCR093W TEL2P53038 688 aa1.41□□□□□ -2.18
CDC39YCR093W PHM6Q05637 104 aa1.41□□□□□ -2.18
CDC39YCR093W ACF2Q12168 779 aa1.41□□□□□ -2.18
CDC39YCR093W ERG27Q12452 347 aaKnown RBP1.41□□□□□ -2.18
CDC39YCR093W YLR415CO13578 112 aa1.41□□□□□ -2.18
CDC39YCR093W CYC1P00044 109 aaPredicted RBP1.41□□□□□ -2.18
CDC39YCR093W SPO16P17122 198 aa1.41□□□□□ -2.18
CDC39YCR093W STE11P23561 717 aa1.41□□□□□ -2.18
CDC39YCR093W NPR3P38742 1146 aa1.41□□□□□ -2.18
CDC39YCR093W HXT13P39924 564 aa1.41□□□□□ -2.18
CDC39YCR093W CTR1P49573 406 aa1.41□□□□□ -2.18
CDC39YCR093W EXG2P52911 562 aa1.41□□□□□ -2.18
CDC39YCR093W HXT17P53631 564 aa1.41□□□□□ -2.18
CDC39YCR093W RIA1P53893 1110 aa1.41□□□□□ -2.18
CDC39YCR093W HXT15P54854 567 aa1.41□□□□□ -2.18
CDC39YCR093W AIM41Q12032 185 aa1.41□□□□□ -2.18
CDC39YCR093W RPS9BP05755 195 aaKnown RBP1.41□□□□□ -2.18
CDC39YCR093W CTF8P38877 133 aa1.41□□□□□ -2.18
CDC39YCR093W UBP12P39538 1254 aa1.41□□□□□ -2.18
CDC39YCR093W LAS21P40367 830 aa1.41□□□□□ -2.18
CDC39YCR093W SPO1P53541 631 aa1.41□□□□□ -2.18
CDC39YCR093W ORM2Q06144 216 aa1.41□□□□□ -2.18
CDC39YCR093W TMA17Q12513 150 aa1.41□□□□□ -2.18
CDC39YCR093W GAS1P22146 559 aaKnown RBP1.4□□□□□ -2.18
CDC39YCR093W CWH43P25618 953 aa1.4□□□□□ -2.18
CDC39YCR093W YNK1P36010 153 aaKnown RBP1.4□□□□□ -2.18
CDC39YCR093W SEA4P38164 1038 aa1.4□□□□□ -2.18
CDC39YCR093W SAP185P40856 1058 aa1.4□□□□□ -2.18
CDC39YCR093W NPC2Q12408 173 aa1.4□□□□□ -2.18
CDC39YCR093W RER1P25560 188 aa1.4□□□□□ -2.19
CDC39YCR093W MUM2P38236 366 aa1.4□□□□□ -2.19
CDC39YCR093W ELO3P40319 345 aa1.4□□□□□ -2.19
CDC39YCR093W IRC24P40580 263 aa1.4□□□□□ -2.19
CDC39YCR093W OPT1P40897 799 aa1.4□□□□□ -2.19
CDC39YCR093W IES1P43579 692 aa1.4□□□□□ -2.19
CDC39YCR093W SSY5P47002 699 aa1.4□□□□□ -2.19
CDC39YCR093W HFM1P51979 1187 aa1.4□□□□□ -2.19
CDC39YCR093W COX18P53239 316 aa1.4□□□□□ -2.19
CDC39YCR093W SRT1Q03175 343 aa1.4□□□□□ -2.19
CDC39YCR093W NGL2Q03264 515 aaKnown RBP1.4□□□□□ -2.19
CDC39YCR093W TRI1Q05024 226 aa1.4□□□□□ -2.19
CDC39YCR093W DNF3Q12674 1656 aa1.4□□□□□ -2.19
CDC39YCR093W SPE2P21182 396 aa1.4□□□□□ -2.19
CDC39YCR093W APL2P36000 726 aaPredicted RBP1.4□□□□□ -2.19
CDC39YCR093W TOK1P40310 691 aa1.4□□□□□ -2.19
CDC39YCR093W VHR1P40522 640 aa1.4□□□□□ -2.19
CDC39YCR093W YCG1Q06680 1035 aa1.4□□□□□ -2.19
CDC39YCR093W SFL1P20134 766 aa1.4□□□□□ -2.19
CDC39YCR093W CCR4P31384 837 aaKnown RBP1.4□□□□□ -2.19
CDC39YCR093W SIP1P32578 815 aa1.4□□□□□ -2.19
CDC39YCR093W XRS2P33301 854 aa1.4□□□□□ -2.19
CDC39YCR093W MCD4P36051 919 aa1.4□□□□□ -2.19
CDC39YCR093W RRP3P38712 501 aaKnown RBP1.4□□□□□ -2.19
CDC39YCR093W YGR283CP53336 341 aaPredicted RBP1.4□□□□□ -2.19
CDC39YCR093W GCN5Q03330 439 aa1.4□□□□□ -2.19
CDC39YCR093W HLR1Q04429 423 aa1.4□□□□□ -2.19
CDC39YCR093W CSR1Q06705 408 aaKnown RBP1.4□□□□□ -2.19
CDC39YCR093W HIS7P33734 552 aaKnown RBP1.39□□□□□ -2.19
CDC39YCR093W CTF13P35203 478 aa1.39□□□□□ -2.19
CDC39YCR093W YKL069WP36088 180 aa1.39□□□□□ -2.19
CDC39YCR093W OYE3P41816 400 aaPredicted RBP1.39□□□□□ -2.19
CDC39YCR093W SET2P46995 733 aaKnown RBP1.39□□□□□ -2.19
CDC39YCR093W CNM67P53865 581 aaKnown RBP1.39□□□□□ -2.19
CDC39YCR093W BUL2Q03758 920 aaKnown RBP1.39□□□□□ -2.19
CDC39YCR093W SXM1Q04175 944 aaKnown RBP1.39□□□□□ -2.19
CDC39YCR093W YSH1Q06224 779 aaPredicted RBP1.39□□□□□ -2.19
CDC39YCR093W VHS3Q08438 674 aa1.39□□□□□ -2.19
CDC39YCR093W SLK19Q08581 821 aaKnown RBP1.39□□□□□ -2.19
CDC39YCR093W YMR084WA2P2R3 262 aa1.39□□□□□ -2.19
CDC39YCR093W NUC1P08466 329 aa1.39□□□□□ -2.19
CDC39YCR093W MIS1P09440 975 aaKnown RBP1.39□□□□□ -2.19
CDC39YCR093W HCM1P25364 564 aa1.39□□□□□ -2.19
CDC39YCR093W CNS1P33313 385 aa1.39□□□□□ -2.19
CDC39YCR093W RPF2P36160 344 aaKnown RBP1.39□□□□□ -2.19
CDC39YCR093W NOP15P53927 220 aaPredicted RBP1.39□□□□□ -2.19
CDC39YCR093W MLC2Q06580 163 aa1.39□□□□□ -2.19
CDC39YCR093W TPO1Q07824 586 aa1.39□□□□□ -2.19
CDC39YCR093W GEA2P39993 1459 aaKnown RBP1.39□□□□□ -2.19
CDC39YCR093W BET2P20133 325 aa1.39□□□□□ -2.19
CDC39YCR093W SPO11P23179 398 aa1.39□□□□□ -2.19
CDC39YCR093W MSH1P25846 959 aa1.39□□□□□ -2.19
CDC39YCR093W MNN4P36044 1178 aa1.39□□□□□ -2.19
CDC39YCR093W PEX7P39108 375 aa1.39□□□□□ -2.19
CDC39YCR093W PSF2P40359 213 aa1.39□□□□□ -2.19
CDC39YCR093W TMA108P40462 946 aa1.39□□□□□ -2.19
CDC39YCR093W DUS1P53759 423 aaKnown RBP1.39□□□□□ -2.19
CDC39YCR093W IRC3Q06683 689 aa1.39□□□□□ -2.19
CDC39YCR093W CRD1Q07560 283 aa1.39□□□□□ -2.19
CDC39YCR093W NUS1Q12063 375 aa1.39□□□□□ -2.19
CDC39YCR093W ERR1P0CX10 437 aa1.39□□□□□ -2.19
CDC39YCR093W ERR2P0CX11 437 aa1.39□□□□□ -2.19
Retrieved 100 of 5,963 RNA–protein pairs in 13.8 ms