RNA–Protein interactions for RNA: ENST00000532678.1

PUM1-223, Transcript of pumilio RNA binding family member 1, human

TSL 4

Gene PUM1, Length 793 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PUM1-223	ENST00000532678	NECTIN2	Q92692	538 aa		10.4	□□□□□ -0.74
PUM1-223	ENST00000532678	WNT2B	Q93097	391 aa		10.4	□□□□□ -0.74
PUM1-223	ENST00000532678	TSR2	Q969E8	191 aa	Known RBP	10.4	□□□□□ -0.74
PUM1-223	ENST00000532678	CCDC102A	Q96A19	550 aa		10.4	□□□□□ -0.74
PUM1-223	ENST00000532678	ZNF428	Q96B54	188 aa		10.4	□□□□□ -0.74
PUM1-223	ENST00000532678	TMEM134	Q9H6X4	195 aa		10.4	□□□□□ -0.74
PUM1-223	ENST00000532678	FANCI	Q9NVI1	1328 aa		10.39	□□□□□ -0.75
PUM1-223	ENST00000532678	RCCD1	A6NED2	376 aa		10.39	□□□□□ -0.75
PUM1-223	ENST00000532678	HSPA1A	P0DMV8	641 aa	Known RBP	10.39	□□□□□ -0.75
PUM1-223	ENST00000532678	HSPA1B	P0DMV9	641 aa	Known RBP	10.39	□□□□□ -0.75
PUM1-223	ENST00000532678	EIF2S2	P20042	333 aa	Known RBP	10.39	□□□□□ -0.75
PUM1-223	ENST00000532678	FAM161A	Q3B820	660 aa		10.39	□□□□□ -0.75
PUM1-223	ENST00000532678	SUSD4	Q5VX71	490 aa		10.39	□□□□□ -0.75
PUM1-223	ENST00000532678	WDR63	Q8IWG1	891 aa		10.39	□□□□□ -0.75
PUM1-223	ENST00000532678	SYNE4	Q8N205	404 aa		10.39	□□□□□ -0.75
PUM1-223	ENST00000532678	KRI1	Q8N9T8	703 aa	Known RBP	10.39	□□□□□ -0.75
PUM1-223	ENST00000532678	MKRN1	Q9UHC7	482 aa	Known RBP	10.39	□□□□□ -0.75
PUM1-223	ENST00000532678	RIC1	Q4ADV7	1423 aa		10.39	□□□□□ -0.75
PUM1-223	ENST00000532678	TAF1	P21675	1872 aa		10.38	□□□□□ -0.75
PUM1-223	ENST00000532678	RNF123	Q5XPI4	1314 aa		10.38	□□□□□ -0.75
PUM1-223	ENST00000532678	NTSR2	O95665	410 aa		10.38	□□□□□ -0.75
PUM1-223	ENST00000532678	IARS	P41252	1262 aa	Known RBP	10.38	□□□□□ -0.75
PUM1-223	ENST00000532678	EAPP	Q56P03	285 aa	Predicted RBP	10.38	□□□□□ -0.75
PUM1-223	ENST00000532678	THSD4	Q6ZMP0	1018 aa		10.38	□□□□□ -0.75
PUM1-223	ENST00000532678	TAF1D	Q9H5J8	278 aa	Predicted RBP	10.38	□□□□□ -0.75
PUM1-223	ENST00000532678	IBTK	Q9P2D0	1353 aa	Predicted RBP	10.38	□□□□□ -0.75
PUM1-223	ENST00000532678	ERVV-1	B6SEH8	477 aa		10.37	□□□□□ -0.75
PUM1-223	ENST00000532678	HNRNPU	Q00839	825 aa	Known RBP eCLIP	10.37	□□□□□ -0.75
PUM1-223	ENST00000532678	CRY2	Q49AN0	593 aa		10.37	□□□□□ -0.75
PUM1-223	ENST00000532678	LRP10	Q7Z4F1	713 aa		10.37	□□□□□ -0.75
PUM1-223	ENST00000532678	LRCH3	Q96II8	777 aa		10.37	□□□□□ -0.75
PUM1-223	ENST00000532678	NYX	Q9GZU5	481 aa		10.37	□□□□□ -0.75
PUM1-223	ENST00000532678	COL4A1	P02462	1669 aa		10.37	□□□□□ -0.75
PUM1-223	ENST00000532678	PCNT	O95613	3336 aa		10.36	□□□□□ -0.75
PUM1-223	ENST00000532678	AIMP1	Q12904	312 aa	Known RBP	10.36	□□□□□ -0.75
PUM1-223	ENST00000532678	DUSP27	Q5VZP5	1158 aa		10.36	□□□□□ -0.75
PUM1-223	ENST00000532678	GIGYF2	Q6Y7W6	1299 aa	Known RBP	10.36	□□□□□ -0.75
PUM1-223	ENST00000532678	SAMD7	Q7Z3H4	446 aa		10.36	□□□□□ -0.75
PUM1-223	ENST00000532678	ZNF34	Q8IZ26	560 aa		10.36	□□□□□ -0.75
PUM1-223	ENST00000532678	RPGR	Q92834	1020 aa	Known RBP	10.36	□□□□□ -0.75
PUM1-223	ENST00000532678	KCTD12	Q96CX2	325 aa	Known RBP	10.36	□□□□□ -0.75
PUM1-223	ENST00000532678	PHOX2B	Q99453	314 aa		10.36	□□□□□ -0.75
PUM1-223	ENST00000532678	MYH16	Q9H6N6	1097 aa		10.36	□□□□□ -0.75
PUM1-223	ENST00000532678	CDKN2AIP	Q9NXV6	580 aa	Predicted RBP	10.36	□□□□□ -0.75
PUM1-223	ENST00000532678	DDX60	Q8IY21	1712 aa	Known RBP	10.36	□□□□□ -0.75
PUM1-223	ENST00000532678	ERBB4	Q15303	1308 aa		10.35	□□□□□ -0.75
PUM1-223	ENST00000532678	PASK	Q96RG2	1323 aa		10.35	□□□□□ -0.75
PUM1-223	ENST00000532678	ELL2	O00472	640 aa	Predicted RBP	10.35	□□□□□ -0.75
PUM1-223	ENST00000532678	PPEF1	O14829	653 aa	Predicted RBP	10.35	□□□□□ -0.75
PUM1-223	ENST00000532678	HOXB7	P09629	217 aa		10.35	□□□□□ -0.75
PUM1-223	ENST00000532678	ALDH1B1	P30837	517 aa		10.35	□□□□□ -0.75
PUM1-223	ENST00000532678	AMHR2	Q16671	573 aa		10.35	□□□□□ -0.75
PUM1-223	ENST00000532678	HDGFL1	Q5TGJ6	251 aa		10.35	□□□□□ -0.75
PUM1-223	ENST00000532678	LDHD	Q86WU2	507 aa		10.35	□□□□□ -0.75
PUM1-223	ENST00000532678	RTKN2	Q8IZC4	609 aa		10.35	□□□□□ -0.75
PUM1-223	ENST00000532678	C8orf58	Q8NAV2	365 aa		10.35	□□□□□ -0.75
PUM1-223	ENST00000532678	HACL1	Q9UJ83	578 aa		10.35	□□□□□ -0.75
PUM1-223	ENST00000532678	GJA3	Q9Y6H8	435 aa		10.35	□□□□□ -0.75
PUM1-223	ENST00000532678	ABCC4	O15439	1325 aa		10.34	□□□□□ -0.75
PUM1-223	ENST00000532678	IQCA1L	A6NCM1	817 aa		10.34	□□□□□ -0.75
PUM1-223	ENST00000532678		E9PSI1	815 aa		10.34	□□□□□ -0.75
PUM1-223	ENST00000532678	FZD9	O00144	591 aa		10.34	□□□□□ -0.75
PUM1-223	ENST00000532678	EPHX2	P34913	555 aa		10.34	□□□□□ -0.75
PUM1-223	ENST00000532678	SLC4A3	P48751	1232 aa		10.34	□□□□□ -0.75
PUM1-223	ENST00000532678	FMR1	Q06787	632 aa	Known RBP eCLIP	10.34	□□□□□ -0.75
PUM1-223	ENST00000532678	MAP1S	Q66K74	1059 aa	Predicted RBP	10.34	□□□□□ -0.75
PUM1-223	ENST00000532678	NYAP1	Q6ZVC0	841 aa		10.34	□□□□□ -0.75
PUM1-223	ENST00000532678	SLF2	Q8IX21	1173 aa		10.34	□□□□□ -0.75
PUM1-223	ENST00000532678	TSPYL6	Q8N831	410 aa		10.34	□□□□□ -0.75
PUM1-223	ENST00000532678	XAGE3	Q8WTP9	111 aa		10.34	□□□□□ -0.75
PUM1-223	ENST00000532678	DAXX	Q9UER7	740 aa	Predicted RBP	10.34	□□□□□ -0.75
PUM1-223	ENST00000532678	HCLS1	P14317	486 aa	Predicted RBP	10.33	□□□□□ -0.76
PUM1-223	ENST00000532678	HOXA10	P31260	410 aa	Predicted RBP	10.33	□□□□□ -0.76
PUM1-223	ENST00000532678	EXOSC9	Q06265	439 aa	Known RBP	10.33	□□□□□ -0.76
PUM1-223	ENST00000532678	AOC3	Q16853	763 aa		10.33	□□□□□ -0.76
PUM1-223	ENST00000532678	TWISTNB	Q3B726	338 aa	Predicted RBP	10.33	□□□□□ -0.76
PUM1-223	ENST00000532678	SWT1	Q5T5J6	900 aa	Known RBP	10.33	□□□□□ -0.76
PUM1-223	ENST00000532678	COPS6	Q7L5N1	327 aa		10.33	□□□□□ -0.76
PUM1-223	ENST00000532678	TNS4	Q8IZW8	715 aa		10.33	□□□□□ -0.76
PUM1-223	ENST00000532678	LARGE2	Q8N3Y3	721 aa		10.33	□□□□□ -0.76
PUM1-223	ENST00000532678	RBM17	Q96I25	401 aa	Known RBP	10.33	□□□□□ -0.76
PUM1-223	ENST00000532678	PSMD1	Q99460	953 aa		10.33	□□□□□ -0.76
PUM1-223	ENST00000532678	TMUB1	Q9BVT8	246 aa		10.33	□□□□□ -0.76
PUM1-223	ENST00000532678	CHPF2	Q9P2E5	772 aa		10.33	□□□□□ -0.76
PUM1-223	ENST00000532678	HCST	Q9UBK5	93 aa		10.33	□□□□□ -0.76
PUM1-223	ENST00000532678	CNTNAP1	P78357	1384 aa		10.33	□□□□□ -0.76
PUM1-223	ENST00000532678	DUOX1	Q9NRD9	1551 aa		10.33	□□□□□ -0.76
PUM1-223	ENST00000532678	LRRC37A	A6NMS7	1700 aa		10.33	□□□□□ -0.76
PUM1-223	ENST00000532678	PPIP5K2	O43314	1243 aa		10.32	□□□□□ -0.76
PUM1-223	ENST00000532678	ITGBL1	O95965	494 aa	Predicted RBP	10.32	□□□□□ -0.76
PUM1-223	ENST00000532678	SLFN5	Q08AF3	891 aa		10.32	□□□□□ -0.76
PUM1-223	ENST00000532678	PARP10	Q53GL7	1025 aa		10.32	□□□□□ -0.76
PUM1-223	ENST00000532678	PPP1R42	Q7Z4L9	355 aa		10.32	□□□□□ -0.76
PUM1-223	ENST00000532678	JDP2	Q8WYK2	163 aa		10.32	□□□□□ -0.76
PUM1-223	ENST00000532678	CRAMP1	Q96RY5	1269 aa		10.32	□□□□□ -0.76
PUM1-223	ENST00000532678	UTP14A	Q9BVJ6	771 aa	Known RBP	10.32	□□□□□ -0.76
PUM1-223	ENST00000532678	TSR3	Q9UJK0	312 aa	Known RBP	10.32	□□□□□ -0.76
PUM1-223	ENST00000532678	ZBED9	Q6R2W3	1325 aa		10.32	□□□□□ -0.76
PUM1-223	ENST00000532678	TRIM66	O15016	1216 aa		10.31	□□□□□ -0.76
PUM1-223	ENST00000532678	EPS15	P42566	896 aa		10.31	□□□□□ -0.76

Retrieved 100 of 20,778 RNA–protein pairs in 157.7 ms