RNA–Protein interactions for RNA: ENST00000447654.5

HMGA1-205, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 2,159 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-205ENST00000447654 NCAPD2Q15021 1401 aa22.29■■□□□ 1.16
HMGA1-205ENST00000447654 TRDNQ13061 729 aa22.28■■□□□ 1.16
HMGA1-205ENST00000447654 SPATA32Q96LK8 384 aa22.28■■□□□ 1.16
HMGA1-205ENST00000447654 TM6SF1Q9BZW5 370 aa22.28■■□□□ 1.16
HMGA1-205ENST00000447654 LRRCC1Q9C099 1032 aa22.28■■□□□ 1.16
HMGA1-205ENST00000447654 MST1RQ04912 1400 aa22.28■■□□□ 1.16
HMGA1-205ENST00000447654 VPS37CA5D8V6 355 aaPredicted RBP22.28■■□□□ 1.16
HMGA1-205ENST00000447654 BECN2A8MW95 431 aa22.28■■□□□ 1.16
HMGA1-205ENST00000447654 MAP2K7O14733 419 aa22.28■■□□□ 1.16
HMGA1-205ENST00000447654 SEC31AO94979 1220 aaKnown RBP22.28■■□□□ 1.16
HMGA1-205ENST00000447654 BRD3Q15059 726 aa22.27■■□□□ 1.16
HMGA1-205ENST00000447654 HDGFL1Q5TGJ6 251 aa22.27■■□□□ 1.16
HMGA1-205ENST00000447654 SMC2O95347 1197 aa22.26■■□□□ 1.15
HMGA1-205ENST00000447654 EVCP57679 992 aa22.26■■□□□ 1.15
HMGA1-205ENST00000447654 AKAP4Q5JQC9 854 aa22.26■■□□□ 1.15
HMGA1-205ENST00000447654 RABGGTAQ92696 567 aa22.26■■□□□ 1.15
HMGA1-205ENST00000447654 RILPL2Q969X0 211 aa22.26■■□□□ 1.15
HMGA1-205ENST00000447654 LMO7Q8WWI1 1683 aa22.26■■□□□ 1.15
HMGA1-205ENST00000447654 CCDC151A5D8V7 595 aa22.26■■□□□ 1.15
HMGA1-205ENST00000447654 PRR29P0C7W0 189 aa22.26■■□□□ 1.15
HMGA1-205ENST00000447654 EIF2S2P20042 333 aaKnown RBP22.26■■□□□ 1.15
HMGA1-205ENST00000447654 LEO1Q8WVC0 666 aaPredicted RBP22.26■■□□□ 1.15
HMGA1-205ENST00000447654 STRCQ7RTU9 1775 aa22.25■■□□□ 1.15
HMGA1-205ENST00000447654 ALS2Q96Q42 1657 aa22.25■■□□□ 1.15
HMGA1-205ENST00000447654 MPHOSPH8Q99549 860 aa22.25■■□□□ 1.15
HMGA1-205ENST00000447654 A0A087WUV0 522 aaPredicted RBP22.25■■□□□ 1.15
HMGA1-205ENST00000447654 SGSM2O43147 1006 aa22.25■■□□□ 1.15
HMGA1-205ENST00000447654 USP8P40818 1118 aa22.25■■□□□ 1.15
HMGA1-205ENST00000447654 LARP1BQ659C4 914 aaKnown RBP22.25■■□□□ 1.15
HMGA1-205ENST00000447654 CCDC83Q8IWF9 413 aa22.25■■□□□ 1.15
HMGA1-205ENST00000447654 ANKRD20A12PQ8NF67 263 aa22.25■■□□□ 1.15
HMGA1-205ENST00000447654 HNRNPLLQ8WVV9 542 aaKnown RBP22.25■■□□□ 1.15
HMGA1-205ENST00000447654 ANO10Q9NW15 660 aa22.25■■□□□ 1.15
HMGA1-205ENST00000447654 KDM3BQ7LBC6 1761 aa22.25■■□□□ 1.15
HMGA1-205ENST00000447654 CACNA1FO60840 1977 aa22.24■■□□□ 1.15
HMGA1-205ENST00000447654 MAP2K2P36507 400 aa22.24■■□□□ 1.15
HMGA1-205ENST00000447654 PLEKHO1Q53GL0 409 aaPredicted RBP22.24■■□□□ 1.15
HMGA1-205ENST00000447654 FCHSD1Q86WN1 690 aa22.24■■□□□ 1.15
HMGA1-205ENST00000447654 CABLES1Q8TDN4 633 aa22.24■■□□□ 1.15
HMGA1-205ENST00000447654 NAT10Q9H0A0 1025 aaKnown RBP22.24■■□□□ 1.15
HMGA1-205ENST00000447654 KIF1AQ12756 1690 aa22.24■■□□□ 1.15
HMGA1-205ENST00000447654 PNMA6EA0A0J9YXQ4 647 aa22.23■■□□□ 1.15
HMGA1-205ENST00000447654 ANXA1P04083 346 aa22.23■■□□□ 1.15
HMGA1-205ENST00000447654 SFPQP23246 707 aaKnown RBP eCLIP22.23■■□□□ 1.15
HMGA1-205ENST00000447654 HOMER1Q86YM7 354 aa22.23■■□□□ 1.15
HMGA1-205ENST00000447654 NR1I2O75469 434 aa22.23■■□□□ 1.15
HMGA1-205ENST00000447654 GNAI3P08754 354 aa22.23■■□□□ 1.15
HMGA1-205ENST00000447654 ATF3P18847 181 aa22.23■■□□□ 1.15
HMGA1-205ENST00000447654 RSRC2Q7L4I2 434 aaKnown RBP22.23■■□□□ 1.15
HMGA1-205ENST00000447654 BTBD11A6QL63 1104 aa22.22■■□□□ 1.15
HMGA1-205ENST00000447654 RNMTO43148 476 aaKnown RBP22.22■■□□□ 1.15
HMGA1-205ENST00000447654 EIF3JO75822 258 aaKnown RBP22.22■■□□□ 1.15
HMGA1-205ENST00000447654 EIF5P55010 431 aaKnown RBP22.22■■□□□ 1.15
HMGA1-205ENST00000447654 DHX37Q8IY37 1157 aaKnown RBP22.22■■□□□ 1.15
HMGA1-205ENST00000447654 LSG1Q9H089 658 aaKnown RBP22.22■■□□□ 1.15
HMGA1-205ENST00000447654 CHPF2Q9P2E5 772 aa22.22■■□□□ 1.15
HMGA1-205ENST00000447654 KCNG1Q9UIX4 513 aa22.22■■□□□ 1.15
HMGA1-205ENST00000447654 CHMP3Q9Y3E7 222 aa22.22■■□□□ 1.15
HMGA1-205ENST00000447654 GNAI2P04899 355 aa22.22■■□□□ 1.15
HMGA1-205ENST00000447654 TUBB4BP68371 445 aa22.22■■□□□ 1.15
HMGA1-205ENST00000447654 DHX40Q8IX18 779 aaKnown RBP22.22■■□□□ 1.15
HMGA1-205ENST00000447654 CARD6Q9BX69 1037 aa22.22■■□□□ 1.15
HMGA1-205ENST00000447654 USP44Q9H0E7 712 aa22.22■■□□□ 1.15
HMGA1-205ENST00000447654 SOS1Q07889 1333 aaPredicted RBP22.21■■□□□ 1.15
HMGA1-205ENST00000447654 CAMTA1Q9Y6Y1 1673 aa22.21■■□□□ 1.15
HMGA1-205ENST00000447654 SRGAP3O43295 1099 aa22.21■■□□□ 1.15
HMGA1-205ENST00000447654 TEFQ10587 303 aa22.21■■□□□ 1.15
HMGA1-205ENST00000447654 SART3Q15020 963 aaKnown RBP22.21■■□□□ 1.15
HMGA1-205ENST00000447654 TRIM65Q6PJ69 517 aa22.21■■□□□ 1.15
HMGA1-205ENST00000447654 TADA2BQ86TJ2 420 aa22.21■■□□□ 1.15
HMGA1-205ENST00000447654 BICD2Q8TD16 824 aa22.21■■□□□ 1.15
HMGA1-205ENST00000447654 CCDC34Q96HJ3 373 aa22.21■■□□□ 1.15
HMGA1-205ENST00000447654 UTP14AQ9BVJ6 771 aaKnown RBP22.21■■□□□ 1.15
HMGA1-205ENST00000447654 SUFUQ9UMX1 484 aa22.21■■□□□ 1.15
HMGA1-205ENST00000447654 PARP3Q9Y6F1 533 aa22.21■■□□□ 1.15
HMGA1-205ENST00000447654 PRAMEF22A3QJZ6 481 aa22.21■■□□□ 1.15
HMGA1-205ENST00000447654 C11orf57Q6ZUT1 292 aaPredicted RBP22.21■■□□□ 1.15
HMGA1-205ENST00000447654 NBPF11Q86T75 865 aa22.21■■□□□ 1.15
HMGA1-205ENST00000447654 CEP57L1Q8IYX8 460 aa22.21■■□□□ 1.15
HMGA1-205ENST00000447654 KCNB2Q92953 911 aa22.21■■□□□ 1.15
HMGA1-205ENST00000447654 PDRG1Q9NUG6 133 aa22.21■■□□□ 1.15
HMGA1-205ENST00000447654 H3BQF6 201 aa22.2■■□□□ 1.14
HMGA1-205ENST00000447654 POTEB2H3BUK9 544 aa22.2■■□□□ 1.14
HMGA1-205ENST00000447654 APOBRQ0VD83 1088 aa22.2■■□□□ 1.14
HMGA1-205ENST00000447654 LONRF2Q1L5Z9 754 aa22.2■■□□□ 1.14
HMGA1-205ENST00000447654 AMOTQ4VCS5 1084 aa22.2■■□□□ 1.14
HMGA1-205ENST00000447654 GOLGA6L9A6NEM1 432 aa22.19■■□□□ 1.14
HMGA1-205ENST00000447654 LARGE1O95461 756 aa22.19■■□□□ 1.14
HMGA1-205ENST00000447654 ZSWIM6Q9HCJ5 1215 aa22.19■■□□□ 1.14
HMGA1-205ENST00000447654 URI1O94763 535 aaPredicted RBP22.19■■□□□ 1.14
HMGA1-205ENST00000447654 PPFIA4O75335 1185 aa22.18■■□□□ 1.14
HMGA1-205ENST00000447654 BPIFA3Q9BQP9 254 aa22.18■■□□□ 1.14
HMGA1-205ENST00000447654 CYP46A1Q9Y6A2 500 aa22.18■■□□□ 1.14
HMGA1-205ENST00000447654 TDO2P48775 406 aa22.18■■□□□ 1.14
HMGA1-205ENST00000447654 MAP3K9P80192 1104 aa22.18■■□□□ 1.14
HMGA1-205ENST00000447654 HSP90AB3PQ58FF7 597 aa22.18■■□□□ 1.14
HMGA1-205ENST00000447654 C1orf141Q5JVX7 400 aa22.18■■□□□ 1.14
HMGA1-205ENST00000447654 GORABQ5T7V8 394 aa22.18■■□□□ 1.14
HMGA1-205ENST00000447654 ARMCX5Q6P1M9 558 aa22.18■■□□□ 1.14
HMGA1-205ENST00000447654 CDC37L1Q7L3B6 337 aa22.18■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms