RNA–Protein interactions for RNA: ENST00000397906.6

TTC28-201, Transcript of tetratricopeptide repeat domain 28, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene TTC28, Length 11,795 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-201ENST00000397906 ARID5AQ03989 594 aa12.96□□□□□ -0.33
TTC28-201ENST00000397906 TRPM2O94759 1503 aa12.96□□□□□ -0.33
TTC28-201ENST00000397906 TCP10Q12799 353 aa12.96□□□□□ -0.33
TTC28-201ENST00000397906 CHMP2AO43633 222 aa12.96□□□□□ -0.33
TTC28-201ENST00000397906 PRIM1P49642 420 aaKnown RBP12.96□□□□□ -0.33
TTC28-201ENST00000397906 TMTC2Q8N394 836 aa12.96□□□□□ -0.33
TTC28-201ENST00000397906 GPCPD1Q9NPB8 672 aa12.96□□□□□ -0.33
TTC28-201ENST00000397906 NOD1Q9Y239 953 aa12.96□□□□□ -0.33
TTC28-201ENST00000397906 STX1AQ16623 288 aa12.96□□□□□ -0.33
TTC28-201ENST00000397906 OTUD6BQ8N6M0 293 aa12.96□□□□□ -0.33
TTC28-201ENST00000397906 ITGA6P23229 1130 aa12.96□□□□□ -0.33
TTC28-201ENST00000397906 GPR162Q16538 588 aa12.96□□□□□ -0.33
TTC28-201ENST00000397906 FERMT1Q9BQL6 677 aa12.96□□□□□ -0.33
TTC28-201ENST00000397906 RBM27Q9P2N5 1060 aaKnown RBP12.96□□□□□ -0.33
TTC28-201ENST00000397906 LARGE2Q8N3Y3 721 aa12.96□□□□□ -0.34
TTC28-201ENST00000397906 YTHDC2Q9H6S0 1430 aaKnown RBP12.96□□□□□ -0.34
TTC28-201ENST00000397906 H0YIN7 160 aa12.96□□□□□ -0.34
TTC28-201ENST00000397906 TAF5LO75529 589 aa12.96□□□□□ -0.34
TTC28-201ENST00000397906 KRT13P13646 458 aa12.96□□□□□ -0.34
TTC28-201ENST00000397906 SYKP43405 635 aa12.96□□□□□ -0.34
TTC28-201ENST00000397906 ASIC1P78348 528 aa12.96□□□□□ -0.34
TTC28-201ENST00000397906 TEX11Q8IYF3 940 aa12.96□□□□□ -0.34
TTC28-201ENST00000397906 FAM13AO94988 1023 aa12.95□□□□□ -0.34
TTC28-201ENST00000397906 BIVM-ERCC5R4GMW8 1640 aa12.95□□□□□ -0.34
TTC28-201ENST00000397906 TMEM110-MUSTN1A8MSY1 372 aa12.95□□□□□ -0.34
TTC28-201ENST00000397906 TNPO1Q92973 898 aaKnown RBP12.95□□□□□ -0.34
TTC28-201ENST00000397906 TMOD4Q9NZQ9 345 aa12.95□□□□□ -0.34
TTC28-201ENST00000397906 CTAGE5O15320 804 aa12.95□□□□□ -0.34
TTC28-201ENST00000397906 HARSP12081 509 aaKnown RBP12.95□□□□□ -0.34
TTC28-201ENST00000397906 IMPG2Q9BZV3 1241 aa12.95□□□□□ -0.34
TTC28-201ENST00000397906 SSX2IPQ9Y2D8 614 aa12.95□□□□□ -0.34
TTC28-201ENST00000397906 TMCO3Q6UWJ1 677 aa12.95□□□□□ -0.34
TTC28-201ENST00000397906 LRRC27Q9C0I9 530 aa12.95□□□□□ -0.34
TTC28-201ENST00000397906 ERICH4A6NGS2 130 aa12.95□□□□□ -0.34
TTC28-201ENST00000397906 LRSAM1Q6UWE0 723 aa12.95□□□□□ -0.34
TTC28-201ENST00000397906 IL16Q14005 1332 aa12.95□□□□□ -0.34
TTC28-201ENST00000397906 GINS2Q9Y248 185 aa12.95□□□□□ -0.34
TTC28-201ENST00000397906 B4DLN1 442 aa12.95□□□□□ -0.34
TTC28-201ENST00000397906 RNF113AO15541 343 aaKnown RBP12.95□□□□□ -0.34
TTC28-201ENST00000397906 MRPL12P52815 198 aaKnown RBP12.95□□□□□ -0.34
TTC28-201ENST00000397906 GGA1Q9UJY5 639 aa12.95□□□□□ -0.34
TTC28-201ENST00000397906 NUCB1Q02818 461 aa12.94□□□□□ -0.34
TTC28-201ENST00000397906 PDE1AP54750 535 aa12.94□□□□□ -0.34
TTC28-201ENST00000397906 FNBP4Q8N3X1 1017 aaPredicted RBP12.94□□□□□ -0.34
TTC28-201ENST00000397906 DDX19AQ9NUU7 478 aaKnown RBP12.94□□□□□ -0.34
TTC28-201ENST00000397906 KIF21AQ7Z4S6 1674 aa12.94□□□□□ -0.34
TTC28-201ENST00000397906 APOBRQ0VD83 1088 aa12.94□□□□□ -0.34
TTC28-201ENST00000397906 PROCA1Q8NCQ7 364 aaPredicted RBP12.94□□□□□ -0.34
TTC28-201ENST00000397906 KANK3Q6NY19 840 aa12.94□□□□□ -0.34
TTC28-201ENST00000397906 TBC1D2Q9BYX2 928 aa12.94□□□□□ -0.34
TTC28-201ENST00000397906 PAFAH1B1P43034 410 aa12.94□□□□□ -0.34
TTC28-201ENST00000397906 BMP2KLQ5H9B9 411 aa12.94□□□□□ -0.34
TTC28-201ENST00000397906 DPP8Q6V1X1 898 aaPredicted RBP12.94□□□□□ -0.34
TTC28-201ENST00000397906 C16orf45Q96MC5 204 aaPredicted RBP12.94□□□□□ -0.34
TTC28-201ENST00000397906 N4BP3O15049 544 aa12.94□□□□□ -0.34
TTC28-201ENST00000397906 ALDH1L1O75891 902 aa12.94□□□□□ -0.34
TTC28-201ENST00000397906 TSPYL6Q8N831 410 aa12.94□□□□□ -0.34
TTC28-201ENST00000397906 SPECC1Q5M775 1068 aa12.94□□□□□ -0.34
TTC28-201ENST00000397906 USP37Q86T82 979 aa12.94□□□□□ -0.34
TTC28-201ENST00000397906 MRPL50Q8N5N7 158 aaKnown RBP12.94□□□□□ -0.34
TTC28-201ENST00000397906 UIMC1Q96RL1 719 aa12.94□□□□□ -0.34
TTC28-201ENST00000397906 RMND1Q9NWS8 449 aa12.94□□□□□ -0.34
TTC28-201ENST00000397906 PTPDC1A2A3K4 754 aa12.93□□□□□ -0.34
TTC28-201ENST00000397906 PYM1Q9BRP8 204 aaKnown RBP12.93□□□□□ -0.34
TTC28-201ENST00000397906 MBD4O95243 580 aa12.93□□□□□ -0.34
TTC28-201ENST00000397906 PARP1P09874 1014 aaKnown RBP12.93□□□□□ -0.34
TTC28-201ENST00000397906 KRT2P35908 639 aa12.93□□□□□ -0.34
TTC28-201ENST00000397906 DHX58Q96C10 678 aa12.93□□□□□ -0.34
TTC28-201ENST00000397906 BCS1LQ9Y276 419 aa12.93□□□□□ -0.34
TTC28-201ENST00000397906 A0A1W2PP64 1363 aa12.93□□□□□ -0.34
TTC28-201ENST00000397906 ACTN2P35609 894 aa12.93□□□□□ -0.34
TTC28-201ENST00000397906 CNPY2Q9Y2B0 182 aa12.93□□□□□ -0.34
TTC28-201ENST00000397906 GNAT2P19087 354 aa12.93□□□□□ -0.34
TTC28-201ENST00000397906 ZNF594Q96JF6 807 aaPredicted RBP12.93□□□□□ -0.34
TTC28-201ENST00000397906 SPAG5Q96R06 1193 aa12.93□□□□□ -0.34
TTC28-201ENST00000397906 RTL9Q8NET4 1388 aa12.93□□□□□ -0.34
TTC28-201ENST00000397906 MTERF4Q7Z6M4 381 aaKnown RBP12.93□□□□□ -0.34
TTC28-201ENST00000397906 GNAQP50148 359 aa12.93□□□□□ -0.34
TTC28-201ENST00000397906 TRAF1Q13077 416 aa12.93□□□□□ -0.34
TTC28-201ENST00000397906 PTGS1P23219 599 aa12.93□□□□□ -0.34
TTC28-201ENST00000397906 TAOK3Q9H2K8 898 aa12.93□□□□□ -0.34
TTC28-201ENST00000397906 GCOM1H8Y6P7 765 aaPredicted RBP12.93□□□□□ -0.34
TTC28-201ENST00000397906 DDX39AO00148 427 aaKnown RBP12.93□□□□□ -0.34
TTC28-201ENST00000397906 MYZAPP0CAP1 466 aa12.93□□□□□ -0.34
TTC28-201ENST00000397906 AATFQ9NY61 560 aaKnown RBP eCLIP12.93□□□□□ -0.34
TTC28-201ENST00000397906 IVNS1ABPQ9Y6Y0 642 aa12.92□□□□□ -0.34
TTC28-201ENST00000397906 TMX3Q96JJ7 454 aa12.92□□□□□ -0.34
TTC28-201ENST00000397906 KLHDC4Q8TBB5 520 aa12.92□□□□□ -0.34
TTC28-201ENST00000397906 GIMAP6Q6P9H5 292 aa12.92□□□□□ -0.34
TTC28-201ENST00000397906 PHACTR3Q96KR7 559 aa12.92□□□□□ -0.34
TTC28-201ENST00000397906 TSNARE1Q96NA8 513 aa12.92□□□□□ -0.34
TTC28-201ENST00000397906 DENND2AQ9ULE3 1009 aa12.92□□□□□ -0.34
TTC28-201ENST00000397906 CALRP27797 417 aaKnown RBP12.92□□□□□ -0.34
TTC28-201ENST00000397906 ZNF790Q6PG37 636 aa12.92□□□□□ -0.34
TTC28-201ENST00000397906 LINS1Q8NG48 757 aa12.92□□□□□ -0.34
TTC28-201ENST00000397906 IP6K1Q92551 441 aa12.92□□□□□ -0.34
TTC28-201ENST00000397906 HIBADHP31937 336 aaKnown RBP12.91□□□□□ -0.34
TTC28-201ENST00000397906 ATP8B2P98198 1209 aa12.91□□□□□ -0.34
TTC28-201ENST00000397906 EEF2P13639 858 aaKnown RBP12.91□□□□□ -0.34
TTC28-201ENST00000397906 ARMT1Q9H993 441 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms