RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 TNNI3KQ59H18 835 aa11.85□□□□□ -0.51
LIG3-201ENST00000262327 SCAND2PQ9GZW5 306 aaPredicted RBP11.85□□□□□ -0.51
LIG3-201ENST00000262327 FPGT-TNNI3KV9GXZ4 949 aa11.85□□□□□ -0.51
LIG3-201ENST00000262327 MED23Q9ULK4 1368 aa11.85□□□□□ -0.51
LIG3-201ENST00000262327 HMGN5P82970 282 aaKnown RBP11.84□□□□□ -0.51
LIG3-201ENST00000262327 PTPN12Q05209 780 aaKnown RBP11.84□□□□□ -0.51
LIG3-201ENST00000262327 APOBRQ0VD83 1088 aa11.84□□□□□ -0.51
LIG3-201ENST00000262327 SCRN1Q12765 414 aa11.84□□□□□ -0.51
LIG3-201ENST00000262327 BARGINQ6ZT62 677 aa11.84□□□□□ -0.51
LIG3-201ENST00000262327 ANKRD13DQ6ZTN6 518 aa11.84□□□□□ -0.51
LIG3-201ENST00000262327 STOX1Q6ZVD7 989 aa11.84□□□□□ -0.51
LIG3-201ENST00000262327 FNBP4Q8N3X1 1017 aaPredicted RBP11.84□□□□□ -0.51
LIG3-201ENST00000262327 GTF3C6Q969F1 213 aa11.84□□□□□ -0.51
LIG3-201ENST00000262327 GOLGA6L6A8MZA4 724 aa11.84□□□□□ -0.51
LIG3-201ENST00000262327 HSPA1LP34931 641 aa11.84□□□□□ -0.51
LIG3-201ENST00000262327 TIMM10P62072 90 aa11.84□□□□□ -0.51
LIG3-201ENST00000262327 ATP2B3Q16720 1220 aa11.84□□□□□ -0.51
LIG3-201ENST00000262327 RAB11FIP4Q86YS3 637 aa11.84□□□□□ -0.51
LIG3-201ENST00000262327 A0A087WZG4 1122 aa11.83□□□□□ -0.52
LIG3-201ENST00000262327 GOLIM4O00461 696 aa11.83□□□□□ -0.52
LIG3-201ENST00000262327 EXOC5O00471 708 aa11.83□□□□□ -0.52
LIG3-201ENST00000262327 CCDC144BQ3MJ40 725 aa11.83□□□□□ -0.52
LIG3-201ENST00000262327 CCDC144CPQ8IYA2 1237 aa11.83□□□□□ -0.52
LIG3-201ENST00000262327 ZNF592Q92610 1267 aa11.83□□□□□ -0.52
LIG3-201ENST00000262327 CLSTN2Q9H4D0 955 aa11.83□□□□□ -0.52
LIG3-201ENST00000262327 HDAC5Q9UQL6 1122 aa11.83□□□□□ -0.52
LIG3-201ENST00000262327 TNS2Q63HR2 1409 aa11.83□□□□□ -0.52
LIG3-201ENST00000262327 CHAF1AQ13111 956 aaPredicted RBP11.83□□□□□ -0.52
LIG3-201ENST00000262327 RESTQ13127 1097 aa11.83□□□□□ -0.52
LIG3-201ENST00000262327 C11orf57Q6ZUT1 292 aaPredicted RBP11.83□□□□□ -0.52
LIG3-201ENST00000262327 NGLY1Q96IV0 654 aa11.83□□□□□ -0.52
LIG3-201ENST00000262327 CCDC94Q9BW85 323 aaPredicted RBP11.83□□□□□ -0.52
LIG3-201ENST00000262327 ZNF609O15014 1411 aa11.83□□□□□ -0.52
LIG3-201ENST00000262327 LRP6O75581 1613 aa11.83□□□□□ -0.52
LIG3-201ENST00000262327 IGSF3O75054 1194 aa11.83□□□□□ -0.52
LIG3-201ENST00000262327 ZNF75DP51815 510 aa11.83□□□□□ -0.52
LIG3-201ENST00000262327 VPS72Q15906 364 aa11.83□□□□□ -0.52
LIG3-201ENST00000262327 METTL22Q9BUU2 404 aaPredicted RBP11.83□□□□□ -0.52
LIG3-201ENST00000262327 N4BP2Q86UW6 1770 aaPredicted RBP11.82□□□□□ -0.52
LIG3-201ENST00000262327 ELP1O95163 1332 aa11.82□□□□□ -0.52
LIG3-201ENST00000262327 OTUD7BQ6GQQ9 843 aa11.82□□□□□ -0.52
LIG3-201ENST00000262327 LMBR1LQ6UX01 489 aa11.82□□□□□ -0.52
LIG3-201ENST00000262327 GPHNQ9NQX3 736 aaPredicted RBP11.82□□□□□ -0.52
LIG3-201ENST00000262327 CLIP2Q9UDT6 1046 aa11.82□□□□□ -0.52
LIG3-201ENST00000262327 UTYO14607 1347 aa11.82□□□□□ -0.52
LIG3-201ENST00000262327 U2AF2P26368 475 aaKnown RBP eCLIP11.82□□□□□ -0.527e-8■■■□□ 18.4
LIG3-201ENST00000262327 TTC5Q8N0Z6 440 aa11.82□□□□□ -0.52
LIG3-201ENST00000262327 CACTINQ8WUQ7 758 aaKnown RBP11.82□□□□□ -0.52
LIG3-201ENST00000262327 ZNF594Q96JF6 807 aaPredicted RBP11.82□□□□□ -0.52
LIG3-201ENST00000262327 DDX19AQ9NUU7 478 aaKnown RBP11.82□□□□□ -0.52
LIG3-201ENST00000262327 BCL9LQ86UU0 1499 aa11.82□□□□□ -0.52
LIG3-201ENST00000262327 RFX5P48382 616 aaPredicted RBP11.81□□□□□ -0.52
LIG3-201ENST00000262327 HSP90AB3PQ58FF7 597 aa11.81□□□□□ -0.52
LIG3-201ENST00000262327 TTLL5Q6EMB2 1281 aa11.81□□□□□ -0.52
LIG3-201ENST00000262327 ZSCAN25Q6NSZ9 544 aa11.81□□□□□ -0.52
LIG3-201ENST00000262327 C8orf37Q96NL8 207 aa11.81□□□□□ -0.52
LIG3-201ENST00000262327 CCDC85AQ96PX6 553 aaPredicted RBP11.81□□□□□ -0.52
LIG3-201ENST00000262327 GOLPH3LQ9H4A5 285 aa11.81□□□□□ -0.52
LIG3-201ENST00000262327 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.81□□□□□ -0.52
LIG3-201ENST00000262327 ATP5JP18859 108 aa11.81□□□□□ -0.52
LIG3-201ENST00000262327 MTERF4Q7Z6M4 381 aaKnown RBP11.81□□□□□ -0.52
LIG3-201ENST00000262327 CCAR1Q8IX12 1150 aaKnown RBP11.81□□□□□ -0.52
LIG3-201ENST00000262327 HMG20BQ9P0W2 317 aa11.81□□□□□ -0.52
LIG3-201ENST00000262327 MCMDC2Q4G0Z9 681 aa11.8□□□□□ -0.52
LIG3-201ENST00000262327 FILIP1Q7Z7B0 1213 aa11.8□□□□□ -0.52
LIG3-201ENST00000262327 PDCL2Q8N4E4 241 aa11.8□□□□□ -0.52
LIG3-201ENST00000262327 FMNL2Q96PY5 1086 aa11.8□□□□□ -0.52
LIG3-201ENST00000262327 USP28Q96RU2 1077 aa11.8□□□□□ -0.52
LIG3-201ENST00000262327 CTDNEP1O95476 244 aa11.8□□□□□ -0.52
LIG3-201ENST00000262327 SNRKQ9NRH2 765 aa11.8□□□□□ -0.52
LIG3-201ENST00000262327 PTPDC1A2A3K4 754 aa11.8□□□□□ -0.52
LIG3-201ENST00000262327 SNRPA1P09661 255 aaKnown RBP11.8□□□□□ -0.52
LIG3-201ENST00000262327 TNNT1P13805 278 aa11.8□□□□□ -0.52
LIG3-201ENST00000262327 GTF2F1P35269 517 aaKnown RBP eCLIP11.8□□□□□ -0.52
LIG3-201ENST00000262327 HAND2P61296 217 aa11.8□□□□□ -0.52
LIG3-201ENST00000262327 COPRSQ9NQ92 184 aa11.8□□□□□ -0.52
LIG3-201ENST00000262327 GJB4Q9NTQ9 266 aa11.8□□□□□ -0.52
LIG3-201ENST00000262327 TRMT1Q9NXH9 659 aaKnown RBP11.8□□□□□ -0.52
LIG3-201ENST00000262327 PAPPAQ13219 1627 aa11.79□□□□□ -0.52
LIG3-201ENST00000262327 USP27XA6NNY8 438 aa11.79□□□□□ -0.52
LIG3-201ENST00000262327 GOLGA6L19H0YKK7 550 aa11.79□□□□□ -0.52
LIG3-201ENST00000262327 DDB1Q16531 1140 aa11.79□□□□□ -0.52
LIG3-201ENST00000262327 TPD52L1Q16890 204 aaPredicted RBP11.79□□□□□ -0.52
LIG3-201ENST00000262327 USPL1Q5W0Q7 1092 aa11.79□□□□□ -0.52
LIG3-201ENST00000262327 PLA2G4DQ86XP0 818 aa11.79□□□□□ -0.52
LIG3-201ENST00000262327 NSUN7Q8NE18 718 aaKnown RBP11.79□□□□□ -0.52
LIG3-201ENST00000262327 SYTL4Q96C24 671 aaPredicted RBP11.79□□□□□ -0.52
LIG3-201ENST00000262327 NOL12Q9UGY1 213 aaKnown RBP eCLIP11.79□□□□□ -0.52
LIG3-201ENST00000262327 ZNF330Q9Y3S2 320 aaPredicted RBP11.79□□□□□ -0.52
LIG3-201ENST00000262327 V9GYY5 206 aaPredicted RBP11.79□□□□□ -0.52
LIG3-201ENST00000262327 ME1P48163 572 aa11.79□□□□□ -0.52
LIG3-201ENST00000262327 KRT32Q14532 448 aa11.79□□□□□ -0.52
LIG3-201ENST00000262327 U3KPZ7 1027 aaPredicted RBP11.79□□□□□ -0.52
LIG3-201ENST00000262327 LRRC24Q50LG9 513 aa11.78□□□□□ -0.52
LIG3-201ENST00000262327 TMOD3Q9NYL9 352 aa11.78□□□□□ -0.52
LIG3-201ENST00000262327 TOGARAM1Q9Y4F4 1720 aa11.78□□□□□ -0.52
LIG3-201ENST00000262327 ADD1P35611 737 aaKnown RBP11.78□□□□□ -0.52
LIG3-201ENST00000262327 TDRD7Q8NHU6 1098 aaKnown RBP11.78□□□□□ -0.52
LIG3-201ENST00000262327 USP21Q9UK80 565 aa11.78□□□□□ -0.52
LIG3-201ENST00000262327 BECN2A8MW95 431 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms