RNA–Protein interactions for RNA: ENSMUST00000035935.8

Ccdc40-201, Transcript of Coiled-coil domain-containing protein 40, mousemouse

APPRIS P2 TSL 1 (best) BASIC

Gene Ccdc40, Length 4,979 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc40-201ENSMUST00000035935 Bend3Q6PAL0 825 aa11.77□□□□□ -0.52
Ccdc40-201ENSMUST00000035935 Ano8Q6PB70 1060 aa11.77□□□□□ -0.52
Ccdc40-201ENSMUST00000035935 Ddx10Q80Y44 875 aaKnown RBP11.77□□□□□ -0.52
Ccdc40-201ENSMUST00000035935 Sde2Q8K1J5 448 aaKnown RBP11.77□□□□□ -0.52
Ccdc40-201ENSMUST00000035935 Erlin1Q91X78 346 aa11.77□□□□□ -0.52
Ccdc40-201ENSMUST00000035935 Itsn2Q9Z0R6 1659 aa11.77□□□□□ -0.52
Ccdc40-201ENSMUST00000035935 NhsB1AV60 1647 aa11.77□□□□□ -0.53
Ccdc40-201ENSMUST00000035935 Znf18Q810A1 556 aa11.77□□□□□ -0.53
Ccdc40-201ENSMUST00000035935 Kif24Q6NWW5 1356 aa11.77□□□□□ -0.53
Ccdc40-201ENSMUST00000035935 Itga6Q61739 1091 aa11.77□□□□□ -0.53
Ccdc40-201ENSMUST00000035935 RragbQ6NTA4 374 aa11.77□□□□□ -0.53
Ccdc40-201ENSMUST00000035935 Ano2Q8CFW1 1002 aa11.77□□□□□ -0.53
Ccdc40-201ENSMUST00000035935 Mipol1Q9D9F8 279 aa11.77□□□□□ -0.53
Ccdc40-201ENSMUST00000035935 Yeats2Q3TUF7 1407 aa11.77□□□□□ -0.53
Ccdc40-201ENSMUST00000035935 Snap23O09044 210 aa11.77□□□□□ -0.53
Ccdc40-201ENSMUST00000035935 NmiO35309 314 aa11.77□□□□□ -0.53
Ccdc40-201ENSMUST00000035935 SsbP32067 415 aaKnown RBP11.77□□□□□ -0.53
Ccdc40-201ENSMUST00000035935 Usp5P56399 858 aaKnown RBP11.77□□□□□ -0.53
Ccdc40-201ENSMUST00000035935 Ift122Q6NWV3 1182 aa11.77□□□□□ -0.53
Ccdc40-201ENSMUST00000035935 Ppp2r5bQ6PD28 497 aa11.77□□□□□ -0.53
Ccdc40-201ENSMUST00000035935 PtprtQ99M80 1454 aa11.77□□□□□ -0.53
Ccdc40-201ENSMUST00000035935 Gm32742A0A1B0GT42 1604 aa11.76□□□□□ -0.53
Ccdc40-201ENSMUST00000035935 Gm29094F6Q785 221 aa11.76□□□□□ -0.53
Ccdc40-201ENSMUST00000035935 MarcksP26645 309 aaKnown RBP11.76□□□□□ -0.53
Ccdc40-201ENSMUST00000035935 Gng11P61953 73 aa11.76□□□□□ -0.53
Ccdc40-201ENSMUST00000035935 Ssrp1Q08943 708 aaKnown RBP11.76□□□□□ -0.53
Ccdc40-201ENSMUST00000035935 Leo1Q5XJE5 667 aa11.76□□□□□ -0.53
Ccdc40-201ENSMUST00000035935 Tcp11l1Q8BTG3 509 aa11.76□□□□□ -0.53
Ccdc40-201ENSMUST00000035935 Bmp2kQ91Z96 1138 aa11.76□□□□□ -0.53
Ccdc40-201ENSMUST00000035935 Syce1Q9D495 329 aa11.76□□□□□ -0.53
Ccdc40-201ENSMUST00000035935 Ccdc94Q9D6J3 314 aa11.76□□□□□ -0.53
Ccdc40-201ENSMUST00000035935 Smco2Q9DA21 347 aa11.76□□□□□ -0.53
Ccdc40-201ENSMUST00000035935 Abca8bQ8K440 1620 aa11.76□□□□□ -0.53
Ccdc40-201ENSMUST00000035935 Rrp1P56183 494 aaKnown RBP11.76□□□□□ -0.53
Ccdc40-201ENSMUST00000035935 Ccdc181Q80ZU5 509 aa11.76□□□□□ -0.53
Ccdc40-201ENSMUST00000035935 Ranbp6Q8BIV3 1105 aa11.76□□□□□ -0.53
Ccdc40-201ENSMUST00000035935 Hook3Q8BUK6 718 aa11.76□□□□□ -0.53
Ccdc40-201ENSMUST00000035935 Nol7Q9D7Z3 254 aaKnown RBP11.76□□□□□ -0.53
Ccdc40-201ENSMUST00000035935 Esco1Q69Z69 843 aa11.76□□□□□ -0.53
Ccdc40-201ENSMUST00000035935 Dmrt2Q8BG36 561 aa11.76□□□□□ -0.53
Ccdc40-201ENSMUST00000035935 Lmod1Q8BVA4 595 aa11.76□□□□□ -0.53
Ccdc40-201ENSMUST00000035935 Slc39a6Q8C145 765 aa11.76□□□□□ -0.53
Ccdc40-201ENSMUST00000035935 Ctage5Q8R311 779 aa11.76□□□□□ -0.53
Ccdc40-201ENSMUST00000035935 Acot9Q9R0X4 439 aaKnown RBP11.76□□□□□ -0.53
Ccdc40-201ENSMUST00000035935 Zfp853A0A1D5RM95 733 aa11.76□□□□□ -0.53
Ccdc40-201ENSMUST00000035935 A0A1W2P7S8 802 aa11.76□□□□□ -0.53
Ccdc40-201ENSMUST00000035935 Cdc5lQ6A068 802 aaKnown RBP11.76□□□□□ -0.53
Ccdc40-201ENSMUST00000035935 Sgsm2Q80U12 1005 aa11.76□□□□□ -0.53
Ccdc40-201ENSMUST00000035935 Naa15Q80UM3 865 aaKnown RBP11.76□□□□□ -0.53
Ccdc40-201ENSMUST00000035935 SltmQ8CH25 1031 aaKnown RBP11.76□□□□□ -0.53
Ccdc40-201ENSMUST00000035935 Uhrf1bp1B2KF50 1429 aa11.75□□□□□ -0.53
Ccdc40-201ENSMUST00000035935 Secisbp2lQ6A098 1086 aaKnown RBP11.75□□□□□ -0.53
Ccdc40-201ENSMUST00000035935 Rbm17Q8JZX4 405 aaKnown RBP11.75□□□□□ -0.53
Ccdc40-201ENSMUST00000035935 NpcdF8VQB8 469 aa11.75□□□□□ -0.53
Ccdc40-201ENSMUST00000035935 Ppfia3P60469 1194 aa11.75□□□□□ -0.53
Ccdc40-201ENSMUST00000035935 ErmnQ5EBJ4 281 aa11.75□□□□□ -0.53
Ccdc40-201ENSMUST00000035935 Asic4Q7TNS7 539 aa11.75□□□□□ -0.53
Ccdc40-201ENSMUST00000035935 Ccdc93Q7TQK5 629 aa11.75□□□□□ -0.53
Ccdc40-201ENSMUST00000035935 Cc2d1bQ8BRN9 848 aa11.75□□□□□ -0.53
Ccdc40-201ENSMUST00000035935 Tpcn2Q8BWC0 731 aa11.75□□□□□ -0.53
Ccdc40-201ENSMUST00000035935 Gps2Q921N8 327 aa11.75□□□□□ -0.53
Ccdc40-201ENSMUST00000035935 Xrcc4Q924T3 326 aa11.75□□□□□ -0.53
Ccdc40-201ENSMUST00000035935 Letm1Q9Z2I0 738 aa11.75□□□□□ -0.53
Ccdc40-201ENSMUST00000035935 Timm10P62073 90 aa11.75□□□□□ -0.53
Ccdc40-201ENSMUST00000035935 Tspyl3Q3UYP3 334 aa11.75□□□□□ -0.53
Ccdc40-201ENSMUST00000035935 Pla2g4fQ50L41 855 aa11.75□□□□□ -0.53
Ccdc40-201ENSMUST00000035935 Il4rP16382 810 aa11.75□□□□□ -0.53
Ccdc40-201ENSMUST00000035935 Ccdc73Q8CDM4 1066 aa11.75□□□□□ -0.53
Ccdc40-201ENSMUST00000035935 Cetn2Q9R1K9 172 aa11.75□□□□□ -0.53
Ccdc40-201ENSMUST00000035935 AdnpQ9Z103 1108 aaKnown RBP11.75□□□□□ -0.53
Ccdc40-201ENSMUST00000035935 Myo1bP46735 1107 aa11.74□□□□□ -0.53
Ccdc40-201ENSMUST00000035935 Cbx1P83917 185 aaKnown RBP11.74□□□□□ -0.53
Ccdc40-201ENSMUST00000035935 Hdgfl1Q2VPR5 283 aa11.74□□□□□ -0.53
Ccdc40-201ENSMUST00000035935 Arglu1Q3UL36 271 aaKnown RBP11.74□□□□□ -0.53
Ccdc40-201ENSMUST00000035935 Ubash3aQ3V3E1 624 aa11.74□□□□□ -0.53
Ccdc40-201ENSMUST00000035935 Cacna2d4Q5RJF7 1116 aa11.74□□□□□ -0.53
Ccdc40-201ENSMUST00000035935 Klhl10Q9D5V2 608 aa11.74□□□□□ -0.53
Ccdc40-201ENSMUST00000035935 Atp7bQ64446 1462 aa11.74□□□□□ -0.53
Ccdc40-201ENSMUST00000035935 Ccdc12Q8R344 166 aaKnown RBP11.74□□□□□ -0.53
Ccdc40-201ENSMUST00000035935 Smc1bQ920F6 1248 aa11.74□□□□□ -0.53
Ccdc40-201ENSMUST00000035935 Knl1Q66JQ7 1612 aa11.74□□□□□ -0.53
Ccdc40-201ENSMUST00000035935 Akap2O54931 893 aa11.74□□□□□ -0.53
Ccdc40-201ENSMUST00000035935 Tmtc2Q56A06 836 aa11.74□□□□□ -0.53
Ccdc40-201ENSMUST00000035935 Haus2Q9CQS9 234 aa11.74□□□□□ -0.53
Ccdc40-201ENSMUST00000035935 Ssr1Q9CY50 286 aaKnown RBP11.74□□□□□ -0.53
Ccdc40-201ENSMUST00000035935 Irs4Q9Z0Y7 1216 aa11.74□□□□□ -0.53
Ccdc40-201ENSMUST00000035935 P2rx7Q9Z1M0 595 aa11.74□□□□□ -0.53
Ccdc40-201ENSMUST00000035935 Ccdc42Q5SV66 316 aa11.74□□□□□ -0.53
Ccdc40-201ENSMUST00000035935 Ankrd13dQ6PD24 605 aa11.74□□□□□ -0.53
Ccdc40-201ENSMUST00000035935 Taf5lQ91WQ5 589 aa11.74□□□□□ -0.53
Ccdc40-201ENSMUST00000035935 Ptcd1Q8C2E4 695 aaKnown RBP11.73□□□□□ -0.53
Ccdc40-201ENSMUST00000035935 Vps18Q8R307 973 aa11.73□□□□□ -0.53
Ccdc40-201ENSMUST00000035935 Nop2Q922K7 793 aaKnown RBP11.73□□□□□ -0.53
Ccdc40-201ENSMUST00000035935 Calml3Q9D6P8 149 aa11.73□□□□□ -0.53
Ccdc40-201ENSMUST00000035935 Mrvi1Q9WUX5 899 aaKnown RBP11.73□□□□□ -0.53
Ccdc40-201ENSMUST00000035935 Hmgb1P63158 215 aaKnown RBP11.73□□□□□ -0.53
Ccdc40-201ENSMUST00000035935 Kif1bpQ6ZPU9 617 aa11.73□□□□□ -0.53
Ccdc40-201ENSMUST00000035935 Rnf34Q99KR6 376 aa11.73□□□□□ -0.53
Ccdc40-201ENSMUST00000035935 Pik3ap1Q9EQ32 811 aa11.73□□□□□ -0.53
Ccdc40-201ENSMUST00000035935 Kiaa0556Q8C753 1610 aa11.73□□□□□ -0.53
Retrieved 100 of 22,080 RNA–protein pairs in 40.7 ms