RNA–Protein interactions for RNA: ENST00000553868.1

SHMT2-208, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-208ENST00000553868 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.52□□□□□ -0.413e-7■■□□□ 13.9
SHMT2-208ENST00000553868 TGP01266 2768 aa12.52□□□□□ -0.41
SHMT2-208ENST00000553868 ABCA1O95477 2261 aa12.51□□□□□ -0.41
SHMT2-208ENST00000553868 ARHGAP21Q5T5U3 1957 aa12.51□□□□□ -0.41
SHMT2-208ENST00000553868 A0A0U1RQV5 110 aa12.51□□□□□ -0.41
SHMT2-208ENST00000553868 LOC107986453A0A1B0GWG9 222 aa12.51□□□□□ -0.41
SHMT2-208ENST00000553868 OR5H1A6NKK0 313 aa12.51□□□□□ -0.41
SHMT2-208ENST00000553868 CASKO14936 926 aa12.51□□□□□ -0.41
SHMT2-208ENST00000553868 TTRP02766 147 aa12.51□□□□□ -0.41
SHMT2-208ENST00000553868 SERPINA5P05154 406 aa12.51□□□□□ -0.41
SHMT2-208ENST00000553868 UCHL1P09936 223 aa12.51□□□□□ -0.41
SHMT2-208ENST00000553868 ZNF182P17025 639 aaPredicted RBP12.51□□□□□ -0.41
SHMT2-208ENST00000553868 STOMP27105 288 aa12.51□□□□□ -0.41
SHMT2-208ENST00000553868 CALRP27797 417 aaKnown RBP12.51□□□□□ -0.41
SHMT2-208ENST00000553868 RPS11P62280 158 aaKnown RBP eCLIP12.51□□□□□ -0.41
SHMT2-208ENST00000553868 SRSF2Q01130 221 aaKnown RBP12.51□□□□□ -0.41
SHMT2-208ENST00000553868 HSD17B12Q53GQ0 312 aa12.51□□□□□ -0.41
SHMT2-208ENST00000553868 ZNF474Q6S9Z5 364 aaPredicted RBP12.51□□□□□ -0.41
SHMT2-208ENST00000553868 SSX8Q7RTT4 187 aa12.51□□□□□ -0.41
SHMT2-208ENST00000553868 MDP1Q86V88 176 aa12.51□□□□□ -0.41
SHMT2-208ENST00000553868 COMMD2Q86X83 199 aa12.51□□□□□ -0.41
SHMT2-208ENST00000553868 OR8B12Q8NGG6 310 aa12.51□□□□□ -0.41
SHMT2-208ENST00000553868 OR13C5Q8NGS8 318 aa12.51□□□□□ -0.41
SHMT2-208ENST00000553868 DYNC2LI1Q8TCX1 351 aa12.51□□□□□ -0.41
SHMT2-208ENST00000553868 OR14A2Q96R54 314 aa12.51□□□□□ -0.41
SHMT2-208ENST00000553868 RGCCQ9H4X1 137 aa12.51□□□□□ -0.41
SHMT2-208ENST00000553868 CCDC59Q9P031 241 aaKnown RBP12.51□□□□□ -0.41
SHMT2-208ENST00000553868 N6AMT1Q9Y5N5 214 aa12.51□□□□□ -0.41
SHMT2-208ENST00000553868 TRAV1-2A0A0B4J238 106 aa12.5□□□□□ -0.41
SHMT2-208ENST00000553868 P2RY10O00398 339 aa12.5□□□□□ -0.41
SHMT2-208ENST00000553868 PDCD5O14737 125 aa12.5□□□□□ -0.41
SHMT2-208ENST00000553868 TBX1O43435 398 aa12.5□□□□□ -0.41
SHMT2-208ENST00000553868 SYT7O43581 403 aa12.5□□□□□ -0.41
SHMT2-208ENST00000553868 CDRT1O95170 752 aa12.5□□□□□ -0.41
SHMT2-208ENST00000553868 LCATP04180 440 aa12.5□□□□□ -0.41
SHMT2-208ENST00000553868 DBHP09172 617 aa12.5□□□□□ -0.41
SHMT2-208ENST00000553868 SLC2A1P11166 492 aa12.5□□□□□ -0.41
SHMT2-208ENST00000553868 CBR1P16152 277 aa12.5□□□□□ -0.41
SHMT2-208ENST00000553868 CFL1P23528 166 aaKnown RBP12.5□□□□□ -0.41
SHMT2-208ENST00000553868 APEX1P27695 318 aaKnown RBP12.5□□□□□ -0.41
SHMT2-208ENST00000553868 ASCL1P50553 236 aa12.5□□□□□ -0.41
SHMT2-208ENST00000553868 TBC1D28Q2M2D7 210 aa12.5□□□□□ -0.41
SHMT2-208ENST00000553868 ODF4Q2M2E3 257 aa12.5□□□□□ -0.41
SHMT2-208ENST00000553868 RSPO1Q2MKA7 263 aaPredicted RBP12.5□□□□□ -0.41
SHMT2-208ENST00000553868 TIMM23BQ5SRD1 257 aa12.5□□□□□ -0.41
SHMT2-208ENST00000553868 STAC2Q6ZMT1 411 aa12.5□□□□□ -0.41
SHMT2-208ENST00000553868 DOK3Q7L591 496 aa12.5□□□□□ -0.41
SHMT2-208ENST00000553868 PRSS45Q7RTY3 260 aa12.5□□□□□ -0.41
SHMT2-208ENST00000553868 FAM169BQ8N8A8 192 aa12.5□□□□□ -0.41
SHMT2-208ENST00000553868 CPEB3Q8NE35 698 aaKnown RBP12.5□□□□□ -0.41
SHMT2-208ENST00000553868 OR13C3Q8NGS6 347 aa12.5□□□□□ -0.41
SHMT2-208ENST00000553868 SLC7A6Q92536 515 aa12.5□□□□□ -0.41
SHMT2-208ENST00000553868 RGP1Q92546 391 aaPredicted RBP12.5□□□□□ -0.41
SHMT2-208ENST00000553868 ITFG2Q969R8 447 aa12.5□□□□□ -0.41
SHMT2-208ENST00000553868 DERL3Q96Q80 235 aa12.5□□□□□ -0.41
SHMT2-208ENST00000553868 KCNS3Q9BQ31 491 aa12.5□□□□□ -0.41
SHMT2-208ENST00000553868 C19orf24Q9BVV8 132 aa12.5□□□□□ -0.41
SHMT2-208ENST00000553868 OR10A4Q9H209 315 aa12.5□□□□□ -0.41
SHMT2-208ENST00000553868 RNF167Q9H6Y7 350 aa12.5□□□□□ -0.41
SHMT2-208ENST00000553868 CKLFQ9UBR5 152 aa12.5□□□□□ -0.41
SHMT2-208ENST00000553868 TRBV5-7A0A0A0MS05 114 aa12.49□□□□□ -0.41
SHMT2-208ENST00000553868 C5orf49A4QMS7 147 aa12.49□□□□□ -0.41
SHMT2-208ENST00000553868 XRCC2O43543 280 aa12.49□□□□□ -0.41
SHMT2-208ENST00000553868 MTRF1O75570 445 aaKnown RBP12.49□□□□□ -0.41
SHMT2-208ENST00000553868 SDC2P34741 201 aa12.49□□□□□ -0.41
SHMT2-208ENST00000553868 SOX2P48431 317 aa12.49□□□□□ -0.41
SHMT2-208ENST00000553868 RORCP51449 518 aa12.49□□□□□ -0.41
SHMT2-208ENST00000553868 UNQ6126/PRO20091Q6UXV3 157 aa12.49□□□□□ -0.41
SHMT2-208ENST00000553868 CROCCP3Q8IVE0 287 aa12.49□□□□□ -0.41
SHMT2-208ENST00000553868 RDH10Q8IZV5 341 aa12.49□□□□□ -0.41
SHMT2-208ENST00000553868 WDR31Q8NA23 367 aa12.49□□□□□ -0.41
SHMT2-208ENST00000553868 SLC30A7Q8NEW0 376 aa12.49□□□□□ -0.41
SHMT2-208ENST00000553868 OR51E1Q8TCB6 317 aa12.49□□□□□ -0.41
SHMT2-208ENST00000553868 AKAP1Q92667 903 aaKnown RBP eCLIP12.49□□□□□ -0.41
SHMT2-208ENST00000553868 TMEM106AQ96A25 262 aa12.49□□□□□ -0.41
SHMT2-208ENST00000553868 APOBEC3DQ96AK3 386 aaPredicted RBP12.49□□□□□ -0.41
SHMT2-208ENST00000553868 MUCL1Q96DR8 90 aa12.49□□□□□ -0.41
SHMT2-208ENST00000553868 LRRC46Q96FV0 321 aa12.49□□□□□ -0.41
SHMT2-208ENST00000553868 POM121L2Q96KW2 1035 aa12.49□□□□□ -0.41
SHMT2-208ENST00000553868 C1QTNF5Q9BXJ0 243 aa12.49□□□□□ -0.41
SHMT2-208ENST00000553868 CDH20Q9HBT6 801 aa12.49□□□□□ -0.41
SHMT2-208ENST00000553868 NOX3Q9HBY0 568 aa12.49□□□□□ -0.41
SHMT2-208ENST00000553868 TCF7L1Q9HCS4 588 aa12.49□□□□□ -0.41
SHMT2-208ENST00000553868 NOX4Q9NPH5 578 aa12.49□□□□□ -0.41
SHMT2-208ENST00000553868 SNTG1Q9NSN8 517 aa12.49□□□□□ -0.41
SHMT2-208ENST00000553868 JKAMPQ9P055 326 aa12.49□□□□□ -0.41
SHMT2-208ENST00000553868 ZNF503-AS2A6NEH8 195 aa12.48□□□□□ -0.41
SHMT2-208ENST00000553868 C16orf97H3BN30 126 aa12.48□□□□□ -0.41
SHMT2-208ENST00000553868 J3QW42 95 aa12.48□□□□□ -0.41
SHMT2-208ENST00000553868 ZNF20P17024 532 aa12.48□□□□□ -0.41
SHMT2-208ENST00000553868 CCL1P22362 96 aa12.48□□□□□ -0.41
SHMT2-208ENST00000553868 CCNOP22674 350 aa12.48□□□□□ -0.41
SHMT2-208ENST00000553868 TGFBR1P36897 503 aa12.48□□□□□ -0.41
SHMT2-208ENST00000553868 PSMD7P51665 324 aa12.48□□□□□ -0.41
SHMT2-208ENST00000553868 MALLQ13021 153 aa12.48□□□□□ -0.41
SHMT2-208ENST00000553868 INSL4Q14641 139 aa12.48□□□□□ -0.41
SHMT2-208ENST00000553868 TSC22D1Q15714 1073 aa12.48□□□□□ -0.41
SHMT2-208ENST00000553868 OR5L1Q8NGL2 311 aa12.48□□□□□ -0.41
SHMT2-208ENST00000553868 AP3S1Q92572 193 aa12.48□□□□□ -0.41
SHMT2-208ENST00000553868 PPP1R14AQ96A00 147 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms