RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 NOX3Q9HBY0 568 aa13.24□□□□□ -0.29
TRIM28-209ENST00000597423 NDRG3Q9UGV2 375 aa13.24□□□□□ -0.29
TRIM28-209ENST00000597423 SPEF1Q9Y4P9 236 aa13.24□□□□□ -0.29
TRIM28-209ENST00000597423 POLEQ07864 2286 aa13.23□□□□□ -0.29
TRIM28-209ENST00000597423 TRBV5-5A0A0J9YX44 114 aa13.23□□□□□ -0.29
TRIM28-209ENST00000597423 LOC107986453A0A1B0GWG9 222 aa13.23□□□□□ -0.29
TRIM28-209ENST00000597423 AGFG2O95081 481 aa13.23□□□□□ -0.29
TRIM28-209ENST00000597423 IGLV1-44P01699 117 aa13.23□□□□□ -0.29
TRIM28-209ENST00000597423 PCSK6P29122 969 aa13.23□□□□□ -0.29
TRIM28-209ENST00000597423 RAD52P43351 418 aa13.23□□□□□ -0.29
TRIM28-209ENST00000597423 SERPINB10P48595 397 aa13.23□□□□□ -0.29
TRIM28-209ENST00000597423 PSMD7P51665 324 aa13.23□□□□□ -0.29
TRIM28-209ENST00000597423 NCS1P62166 190 aa13.23□□□□□ -0.29
TRIM28-209ENST00000597423 RPS11P62280 158 aaKnown RBP eCLIP13.23□□□□□ -0.29
TRIM28-209ENST00000597423 HSD17B12Q53GQ0 312 aa13.23□□□□□ -0.29
TRIM28-209ENST00000597423 COLCA1Q6ZS62 124 aa13.23□□□□□ -0.29
TRIM28-209ENST00000597423 TPRA1Q86W33 373 aa13.23□□□□□ -0.29
TRIM28-209ENST00000597423 ZNF584Q8IVC4 421 aa13.23□□□□□ -0.29
TRIM28-209ENST00000597423 ZNF808Q8N4W9 903 aaPredicted RBP13.23□□□□□ -0.29
TRIM28-209ENST00000597423 SGK3Q96BR1 496 aa13.23□□□□□ -0.29
TRIM28-209ENST00000597423 BBC3Q96PG8 261 aaPredicted RBP13.23□□□□□ -0.29
TRIM28-209ENST00000597423 MED18Q9BUE0 208 aa13.23□□□□□ -0.29
TRIM28-209ENST00000597423 C1QTNF6Q9BXI9 259 aa13.23□□□□□ -0.29
TRIM28-209ENST00000597423 GPR84Q9NQS5 396 aa13.23□□□□□ -0.29
TRIM28-209ENST00000597423 FREM1Q5H8C1 2179 aa13.22□□□□□ -0.29
TRIM28-209ENST00000597423 SHANK1Q9Y566 2161 aa13.22□□□□□ -0.29
TRIM28-209ENST00000597423 TRAV1-2A0A0B4J238 106 aa13.22□□□□□ -0.29
TRIM28-209ENST00000597423 LOC390937A0A1W2PQ73 354 aa13.22□□□□□ -0.29
TRIM28-209ENST00000597423 FAM90A27PA6NNH2 459 aa13.22□□□□□ -0.29
TRIM28-209ENST00000597423 PDCD5O14737 125 aa13.22□□□□□ -0.29
TRIM28-209ENST00000597423 SC5DO75845 299 aa13.22□□□□□ -0.29
TRIM28-209ENST00000597423 IL1AP01583 271 aa13.22□□□□□ -0.29
TRIM28-209ENST00000597423 UCHL1P09936 223 aa13.22□□□□□ -0.29
TRIM28-209ENST00000597423 CCL1P22362 96 aa13.22□□□□□ -0.29
TRIM28-209ENST00000597423 CALRP27797 417 aaKnown RBP13.22□□□□□ -0.29
TRIM28-209ENST00000597423 SOX6P35712 828 aa13.22□□□□□ -0.29
TRIM28-209ENST00000597423 SOX2P48431 317 aa13.22□□□□□ -0.29
TRIM28-209ENST00000597423 MTNR1BP49286 362 aa13.22□□□□□ -0.29
TRIM28-209ENST00000597423 TAB1Q15750 504 aa13.22□□□□□ -0.29
TRIM28-209ENST00000597423 CNPY1Q3B7I2 92 aa13.22□□□□□ -0.29
TRIM28-209ENST00000597423 SOWAHCQ53LP3 525 aaPredicted RBP13.22□□□□□ -0.29
TRIM28-209ENST00000597423 C10orf35Q96D05 121 aa13.22□□□□□ -0.29
TRIM28-209ENST00000597423 MS4A3Q96HJ5 214 aa13.22□□□□□ -0.29
TRIM28-209ENST00000597423 DERL3Q96Q80 235 aa13.22□□□□□ -0.29
TRIM28-209ENST00000597423 OR14A2Q96R54 314 aa13.22□□□□□ -0.29
TRIM28-209ENST00000597423 DCSTAMPQ9H295 470 aa13.22□□□□□ -0.29
TRIM28-209ENST00000597423 TCF7L1Q9HCS4 588 aa13.22□□□□□ -0.29
TRIM28-209ENST00000597423 ZNF275Q9NSD4 429 aaPredicted RBP13.22□□□□□ -0.29
TRIM28-209ENST00000597423 SNTG1Q9NSN8 517 aa13.22□□□□□ -0.29
TRIM28-209ENST00000597423 CACNA1CQ13936 2221 aa13.21□□□□□ -0.29
TRIM28-209ENST00000597423 BSNQ9UPA5 3926 aa13.21□□□□□ -0.29
TRIM28-209ENST00000597423 DHRS7CA6NNS2 312 aa13.21□□□□□ -0.29
TRIM28-209ENST00000597423 CASKO14936 926 aa13.21□□□□□ -0.29
TRIM28-209ENST00000597423 CRYAAP02489 173 aa13.21□□□□□ -0.29
TRIM28-209ENST00000597423 CCL2P13500 99 aa13.21□□□□□ -0.29
TRIM28-209ENST00000597423 ZNF20P17024 532 aa13.21□□□□□ -0.29
TRIM28-209ENST00000597423 SRMP19623 302 aa13.21□□□□□ -0.29
TRIM28-209ENST00000597423 PEX19P40855 299 aa13.21□□□□□ -0.29
TRIM28-209ENST00000597423 RANBP1P43487 201 aa13.21□□□□□ -0.29
TRIM28-209ENST00000597423 MAP2K3P46734 347 aa13.21□□□□□ -0.29
TRIM28-209ENST00000597423 ZNF83P51522 516 aa13.21□□□□□ -0.29
TRIM28-209ENST00000597423 SORDQ00796 357 aa13.21□□□□□ -0.29
TRIM28-209ENST00000597423 DGUOKQ16854 277 aa13.21□□□□□ -0.29
TRIM28-209ENST00000597423 GFOD2Q3B7J2 385 aa13.21□□□□□ -0.29
TRIM28-209ENST00000597423 ALKBH2Q6NS38 261 aa13.21□□□□□ -0.29
TRIM28-209ENST00000597423 CROCCP3Q8IVE0 287 aa13.21□□□□□ -0.29
TRIM28-209ENST00000597423 SERPINA12Q8IW75 414 aa13.21□□□□□ -0.29
TRIM28-209ENST00000597423 PLPP7Q8NBV4 271 aa13.21□□□□□ -0.29
TRIM28-209ENST00000597423 OR5D14Q8NGL3 314 aa13.21□□□□□ -0.29
TRIM28-209ENST00000597423 RGP1Q92546 391 aaPredicted RBP13.21□□□□□ -0.29
TRIM28-209ENST00000597423 TMEM106AQ96A25 262 aa13.21□□□□□ -0.29
TRIM28-209ENST00000597423 REEP6Q96HR9 211 aa13.21□□□□□ -0.29
TRIM28-209ENST00000597423 FAM71F1Q96KD3 344 aaPredicted RBP13.21□□□□□ -0.29
TRIM28-209ENST00000597423 PLEKHA1Q9HB21 404 aa13.21□□□□□ -0.29
TRIM28-209ENST00000597423 NEK6Q9HC98 313 aa13.21□□□□□ -0.29
TRIM28-209ENST00000597423 NOX4Q9NPH5 578 aa13.21□□□□□ -0.29
TRIM28-209ENST00000597423 ZNF319Q9P2F9 582 aa13.21□□□□□ -0.29
TRIM28-209ENST00000597423 INTS1Q8N201 2190 aaKnown RBP13.2□□□□□ -0.3
TRIM28-209ENST00000597423 TRBV5-7A0A0A0MS05 114 aa13.2□□□□□ -0.3
TRIM28-209ENST00000597423 A0A1B0GTI1 187 aa13.2□□□□□ -0.3
TRIM28-209ENST00000597423 MEGF11A6BM72 1044 aa13.2□□□□□ -0.3
TRIM28-209ENST00000597423 TRIM64BA6NI03 449 aa13.2□□□□□ -0.3
TRIM28-209ENST00000597423 M0R1B8 84 aa13.2□□□□□ -0.3
TRIM28-209ENST00000597423 ICMTO60725 284 aa13.2□□□□□ -0.3
TRIM28-209ENST00000597423 DHRS3O75911 302 aa13.2□□□□□ -0.3
TRIM28-209ENST00000597423 CDRT1O95170 752 aa13.2□□□□□ -0.3
TRIM28-209ENST00000597423 IGLV3-1P01715 115 aa13.2□□□□□ -0.3
TRIM28-209ENST00000597423 CECR9P0C854 216 aa13.2□□□□□ -0.3
TRIM28-209ENST00000597423 PTAFRP25105 342 aa13.2□□□□□ -0.3
TRIM28-209ENST00000597423 GNALP38405 381 aa13.2□□□□□ -0.3
TRIM28-209ENST00000597423 UQCRFS1P47985 274 aa13.2□□□□□ -0.3
TRIM28-209ENST00000597423 RORCP51449 518 aa13.2□□□□□ -0.3
TRIM28-209ENST00000597423 UCP2P55851 309 aa13.2□□□□□ -0.3
TRIM28-209ENST00000597423 PPP3R1P63098 170 aa13.2□□□□□ -0.3
TRIM28-209ENST00000597423 RIPPLY1Q0D2K3 151 aa13.2□□□□□ -0.3
TRIM28-209ENST00000597423 SPCS2Q15005 226 aa13.2□□□□□ -0.3
TRIM28-209ENST00000597423 SNAI3Q3KNW1 292 aa13.2□□□□□ -0.3
TRIM28-209ENST00000597423 TMEM108Q6UXF1 575 aa13.2□□□□□ -0.3
TRIM28-209ENST00000597423 PGAP1Q75T13 922 aa13.2□□□□□ -0.3
TRIM28-209ENST00000597423 MRPL21Q7Z2W9 205 aaKnown RBP13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms