RNA–Protein interactions for RNA: YMR223W

UBP8, Transcript of Ubiquitin-specific protease component of the SAGA acetylation complex, yeast

Gene UBP8, Length 1,416 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBP8	YMR223W	TEX1	P53851	422 aa	Known RBP	4.95	□□□□□ -1.62
UBP8	YMR223W	APM1	Q00776	475 aa	Predicted RBP	4.95	□□□□□ -1.62
UBP8	YMR223W	HOF1	Q05080	669 aa		4.95	□□□□□ -1.62
UBP8	YMR223W	ADY2	P25613	283 aa		4.94	□□□□□ -1.62
UBP8	YMR223W	CCT3	P39077	534 aa	Known RBP	4.94	□□□□□ -1.62
UBP8	YMR223W	YJL206C	P39529	758 aa		4.94	□□□□□ -1.62
UBP8	YMR223W	FLC1	Q08967	793 aa		4.94	□□□□□ -1.62
UBP8	YMR223W	SPC29	P33419	253 aa		4.93	□□□□□ -1.62
UBP8	YMR223W	BET3	P36149	193 aa		4.93	□□□□□ -1.62
UBP8	YMR223W	YKL033W-A	Q86ZR7	236 aa		4.93	□□□□□ -1.62
UBP8	YMR223W	RPN13	O13563	156 aa		4.92	□□□□□ -1.62
UBP8	YMR223W	FLO10	P36170	1169 aa		4.92	□□□□□ -1.62
UBP8	YMR223W	NDC80	P40460	691 aa		4.92	□□□□□ -1.62
UBP8	YMR223W	PHR1	P05066	565 aa	Known RBP RIP-Chip data	4.91	□□□□□ -1.62	not detected
UBP8	YMR223W	PYC1	P11154	1178 aa	Known RBP	4.91	□□□□□ -1.62
UBP8	YMR223W	ARG2	P40360	574 aa		4.91	□□□□□ -1.62
UBP8	YMR223W	CTK1	Q03957	528 aa	Known RBP	4.91	□□□□□ -1.62
UBP8	YMR223W	SPO11	P23179	398 aa		4.9	□□□□□ -1.62
UBP8	YMR223W	GLG1	P36143	616 aa		4.9	□□□□□ -1.62
UBP8	YMR223W	CCT7	P42943	550 aa	Known RBP	4.9	□□□□□ -1.62
UBP8	YMR223W	PRP31	P49704	494 aa	Predicted RBP	4.9	□□□□□ -1.62
UBP8	YMR223W	CAN1	P04817	590 aa		4.89	□□□□□ -1.63
UBP8	YMR223W	APL2	P36000	726 aa	Predicted RBP	4.89	□□□□□ -1.63
UBP8	YMR223W	RSP5	P39940	809 aa	Known RBP	4.89	□□□□□ -1.63
UBP8	YMR223W	CTR1	P49573	406 aa		4.89	□□□□□ -1.63
UBP8	YMR223W	GAL11	P19659	1081 aa		4.89	□□□□□ -1.63
UBP8	YMR223W	TRZ1	P36159	838 aa	Predicted RBP	4.89	□□□□□ -1.63
UBP8	YMR223W	BDH2	P39713	417 aa		4.89	□□□□□ -1.63
UBP8	YMR223W	YEL020C	P39994	560 aa		4.89	□□□□□ -1.63
UBP8	YMR223W	TY4A-J	P47023	414 aa		4.89	□□□□□ -1.63
UBP8	YMR223W	ALY2	P47029	1046 aa		4.89	□□□□□ -1.63
UBP8	YMR223W	RTA1	P53047	317 aa		4.89	□□□□□ -1.63
UBP8	YMR223W	AFT2	Q08957	416 aa		4.89	□□□□□ -1.63
UBP8	YMR223W	APT2	P36973	181 aa		4.88	□□□□□ -1.63
UBP8	YMR223W	NUP60	P39705	539 aa		4.88	□□□□□ -1.63
UBP8	YMR223W	HUL5	P53119	910 aa		4.88	□□□□□ -1.63
UBP8	YMR223W	ATG4	P53867	494 aa		4.88	□□□□□ -1.63
UBP8	YMR223W	ARG5,6	Q01217	863 aa		4.88	□□□□□ -1.63
UBP8	YMR223W	MCM21	Q06675	368 aa		4.88	□□□□□ -1.63
UBP8	YMR223W	PAN2	P53010	1115 aa	Predicted RBP	4.87	□□□□□ -1.63
UBP8	YMR223W	MTL1	P53214	551 aa		4.87	□□□□□ -1.63
UBP8	YMR223W	FHN1	P53279	174 aa		4.87	□□□□□ -1.63
UBP8	YMR223W	ORC4	P54791	529 aa		4.87	□□□□□ -1.63
UBP8	YMR223W	CLF1	Q12309	687 aa	Predicted RBP	4.87	□□□□□ -1.63
UBP8	YMR223W	MDM10	P18409	493 aa		4.86	□□□□□ -1.63
UBP8	YMR223W	ADE2	P21264	571 aa	Known RBP	4.86	□□□□□ -1.63
UBP8	YMR223W	EMP70	P32802	667 aa		4.86	□□□□□ -1.63
UBP8	YMR223W	YHR112C	P38716	378 aa		4.86	□□□□□ -1.63
UBP8	YMR223W	FMO1	P38866	432 aa		4.86	□□□□□ -1.63
UBP8	YMR223W	BNA2	P47125	453 aa		4.86	□□□□□ -1.63
UBP8	YMR223W	YDR338C	Q05497	695 aa		4.86	□□□□□ -1.63
UBP8	YMR223W	THI7	Q05998	598 aa		4.86	□□□□□ -1.63
UBP8	YMR223W	PER1	P25625	357 aa		4.85	□□□□□ -1.63
UBP8	YMR223W	MVD1	P32377	396 aa	Known RBP	4.85	□□□□□ -1.63
UBP8	YMR223W	UBS1	P38290	277 aa		4.85	□□□□□ -1.63
UBP8	YMR223W	SFB3	P38810	929 aa		4.85	□□□□□ -1.63
UBP8	YMR223W	LYS9	P38999	446 aa		4.85	□□□□□ -1.63
UBP8	YMR223W	MIP6	P38760	659 aa	Known RBP	4.84	□□□□□ -1.63
UBP8	YMR223W	PAC2	P39937	518 aa		4.84	□□□□□ -1.63
UBP8	YMR223W	NOP7	P53261	605 aa	Known RBP	4.84	□□□□□ -1.63
UBP8	YMR223W	ICT1	Q12385	394 aa		4.84	□□□□□ -1.63
UBP8	YMR223W	MTC2	P34246	357 aa		4.83	□□□□□ -1.64
UBP8	YMR223W	MRK1	P50873	501 aa		4.83	□□□□□ -1.64
UBP8	YMR223W	CCR4	P31384	837 aa	Known RBP	4.82	□□□□□ -1.64
UBP8	YMR223W	PHO11	P35842	467 aa		4.82	□□□□□ -1.64
UBP8	YMR223W	PHO12	P38693	467 aa		4.82	□□□□□ -1.64
UBP8	YMR223W	YFL052W	P43551	465 aa		4.82	□□□□□ -1.64
UBP8	YMR223W	UBC9	P50623	157 aa	Predicted RBP	4.82	□□□□□ -1.64
UBP8	YMR223W	REC102	Q02721	264 aa		4.82	□□□□□ -1.64
UBP8	YMR223W	MRI1	Q06489	411 aa	Known RBP	4.82	□□□□□ -1.64
UBP8	YMR223W	HRP1	Q99383	534 aa	Known RBP	4.82	□□□□□ -1.64
UBP8	YMR223W	STI1	P15705	589 aa	Known RBP RIP-Chip data	4.81	□□□□□ -1.64	not detected
UBP8	YMR223W	ORC2	P32833	620 aa		4.81	□□□□□ -1.64
UBP8	YMR223W	HRB1	P38922	454 aa	Known RBP RIP-Chip data	4.81	□□□□□ -1.64	not detected
UBP8	YMR223W	GDH3	P39708	457 aa		4.81	□□□□□ -1.64
UBP8	YMR223W	CHZ1	P40019	153 aa	Predicted RBP	4.81	□□□□□ -1.64
UBP8	YMR223W	HMO1	Q03973	246 aa	Known RBP	4.81	□□□□□ -1.64
UBP8	YMR223W	YLR149C	Q99296	730 aa		4.81	□□□□□ -1.64
UBP8	YMR223W	MCD4	P36051	919 aa		4.8	□□□□□ -1.64
UBP8	YMR223W	RPN10	P38886	268 aa	Known RBP	4.8	□□□□□ -1.64
UBP8	YMR223W	ZRT2	Q12436	422 aa		4.8	□□□□□ -1.64
UBP8	YMR223W	STO1	P34160	861 aa	Known RBP	4.8	□□□□□ -1.64
UBP8	YMR223W	CRP1	P38845	465 aa	Known RBP	4.8	□□□□□ -1.64
UBP8	YMR223W	GID8	P40208	455 aa		4.8	□□□□□ -1.64
UBP8	YMR223W	MLH3	Q12083	715 aa		4.8	□□□□□ -1.64
UBP8	YMR223W	VPS34	P22543	875 aa		4.79	□□□□□ -1.64
UBP8	YMR223W	PEX1	P24004	1043 aa		4.79	□□□□□ -1.64
UBP8	YMR223W	TMT1	P32643	299 aa		4.79	□□□□□ -1.64
UBP8	YMR223W	CAF16	P43569	289 aa		4.79	□□□□□ -1.64
UBP8	YMR223W	NPY1	P53164	384 aa		4.79	□□□□□ -1.64
UBP8	YMR223W	NSE3	Q05541	303 aa		4.79	□□□□□ -1.64
UBP8	YMR223W	THR1	P17423	357 aa	Known RBP	4.78	□□□□□ -1.64
UBP8	YMR223W	ERG6	P25087	383 aa	Known RBP	4.78	□□□□□ -1.64
UBP8	YMR223W	MUP3	P38734	546 aa		4.78	□□□□□ -1.64
UBP8	YMR223W	GLO1	P50107	326 aa		4.78	□□□□□ -1.64
UBP8	YMR223W	SEC5	P89102	971 aa		4.78	□□□□□ -1.64
UBP8	YMR223W	SNP1	Q00916	300 aa	Predicted RBP	4.78	□□□□□ -1.64
UBP8	YMR223W	YAP7	Q08182	245 aa		4.78	□□□□□ -1.64
UBP8	YMR223W	HOM2	P13663	365 aa	Known RBP	4.77	□□□□□ -1.65
UBP8	YMR223W	FUB1	P25659	250 aa		4.77	□□□□□ -1.65

Retrieved 100 of 5,963 RNA–protein pairs in 122.6 ms