RNA–Protein interactions for RNA: ENST00000575100.1

VPS53-217, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 1,972 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-217ENST00000575100 PRC1O43663 620 aa8.77□□□□□ -1
VPS53-217ENST00000575100 SORBS3O60504 671 aa8.77□□□□□ -1
VPS53-217ENST00000575100 PAK3O75914 559 aaPredicted RBP8.77□□□□□ -1
VPS53-217ENST00000575100 AAMPQ13685 434 aa8.77□□□□□ -1
VPS53-217ENST00000575100 R3HDM1Q15032 1099 aaKnown RBP8.77□□□□□ -1
VPS53-217ENST00000575100 EZH2Q15910 746 aaKnown RBP8.77□□□□□ -1
VPS53-217ENST00000575100 SLFNL1Q499Z3 407 aa8.77□□□□□ -1
VPS53-217ENST00000575100 TMC7Q7Z402 723 aa8.77□□□□□ -1
VPS53-217ENST00000575100 JDP2Q8WYK2 163 aa8.77□□□□□ -1
VPS53-217ENST00000575100 GEMIN8Q9NWZ8 242 aaKnown RBP8.77□□□□□ -1
VPS53-217ENST00000575100 BRD4O60885 1362 aaPredicted RBP8.77□□□□□ -1.01
VPS53-217ENST00000575100 PRMT3O60678 531 aa8.77□□□□□ -1.01
VPS53-217ENST00000575100 PDGFRBP09619 1106 aa8.77□□□□□ -1.01
VPS53-217ENST00000575100 FGRP09769 529 aa8.77□□□□□ -1.01
VPS53-217ENST00000575100 FKBP4Q02790 459 aaKnown RBP eCLIP8.77□□□□□ -1.01
VPS53-217ENST00000575100 NCOA4Q13772 614 aa8.77□□□□□ -1.01
VPS53-217ENST00000575100 KRBA2Q6ZNG9 492 aa8.77□□□□□ -1.01
VPS53-217ENST00000575100 SLF2Q8IX21 1173 aa8.77□□□□□ -1.01
VPS53-217ENST00000575100 GTF3C2Q8WUA4 911 aaPredicted RBP8.77□□□□□ -1.01
VPS53-217ENST00000575100 RBCK1Q9BYM8 510 aa8.77□□□□□ -1.01
VPS53-217ENST00000575100 TYW1Q9NV66 732 aaKnown RBP8.77□□□□□ -1.01
VPS53-217ENST00000575100 KTN1Q86UP2 1357 aaKnown RBP8.76□□□□□ -1.01
VPS53-217ENST00000575100 NR1H3Q13133 447 aa8.76□□□□□ -1.01
VPS53-217ENST00000575100 CHRNA2Q15822 529 aa8.76□□□□□ -1.01
VPS53-217ENST00000575100 SUGP2Q8IX01 1082 aaKnown RBP eCLIP8.76□□□□□ -1.01
VPS53-217ENST00000575100 MRFAP1L1Q96HT8 127 aa8.76□□□□□ -1.01
VPS53-217ENST00000575100 MTA3Q9BTC8 594 aa8.76□□□□□ -1.01
VPS53-217ENST00000575100 BSDC1Q9NW68 430 aaPredicted RBP8.76□□□□□ -1.01
VPS53-217ENST00000575100 INPP5FQ9Y2H2 1132 aa8.76□□□□□ -1.01
VPS53-217ENST00000575100 PRKAB1Q9Y478 270 aa8.76□□□□□ -1.01
VPS53-217ENST00000575100 DNMT3AQ9Y6K1 912 aaPredicted RBP8.76□□□□□ -1.01
VPS53-217ENST00000575100 COL18A1P39060 1754 aa8.76□□□□□ -1.01
VPS53-217ENST00000575100 AKAP12Q02952 1782 aa8.76□□□□□ -1.01
VPS53-217ENST00000575100 LRRC37A3O60309 1634 aa8.76□□□□□ -1.01
VPS53-217ENST00000575100 MON2Q7Z3U7 1717 aa8.76□□□□□ -1.01
VPS53-217ENST00000575100 SLIT3O75094 1523 aa8.75□□□□□ -1.01
VPS53-217ENST00000575100 FYB1O15117 783 aa8.75□□□□□ -1.01
VPS53-217ENST00000575100 TREHO43280 583 aa8.75□□□□□ -1.01
VPS53-217ENST00000575100 PRPF40AO75400 957 aaKnown RBP8.75□□□□□ -1.01
VPS53-217ENST00000575100 STK10O94804 968 aaKnown RBP8.75□□□□□ -1.01
VPS53-217ENST00000575100 TRIM37O94972 964 aa8.75□□□□□ -1.01
VPS53-217ENST00000575100 EVA1CP58658 441 aa8.75□□□□□ -1.01
VPS53-217ENST00000575100 NR6A1Q15406 480 aa8.75□□□□□ -1.01
VPS53-217ENST00000575100 PLEKHG4Q58EX7 1191 aa8.75□□□□□ -1.01
VPS53-217ENST00000575100 HDGFL2Q7Z4V5 671 aaPredicted RBP8.75□□□□□ -1.01
VPS53-217ENST00000575100 SLAIN1Q8ND83 568 aa8.75□□□□□ -1.01
VPS53-217ENST00000575100 GGNBP2Q9H3C7 697 aa8.75□□□□□ -1.01
VPS53-217ENST00000575100 RNF19AQ9NV58 838 aa8.75□□□□□ -1.01
VPS53-217ENST00000575100 PCDHGC3Q9UN70 934 aa8.75□□□□□ -1.01
VPS53-217ENST00000575100 USP6P35125 1406 aa8.75□□□□□ -1.01
VPS53-217ENST00000575100 COL5A2P05997 1499 aaPredicted RBP8.75□□□□□ -1.01
VPS53-217ENST00000575100 DAB2P98082 770 aa8.75□□□□□ -1.01
VPS53-217ENST00000575100 GRIPAP1Q4V328 841 aa8.75□□□□□ -1.01
VPS53-217ENST00000575100 NME9Q86XW9 330 aa8.75□□□□□ -1.01
VPS53-217ENST00000575100 C8orf48Q96LL4 319 aa8.75□□□□□ -1.01
VPS53-217ENST00000575100 STRN4Q9NRL3 753 aa8.75□□□□□ -1.01
VPS53-217ENST00000575100 THRAP3Q9Y2W1 955 aaKnown RBP8.75□□□□□ -1.01
VPS53-217ENST00000575100 PCDHGA10Q9Y5H3 936 aa8.75□□□□□ -1.01
VPS53-217ENST00000575100 NPC1L1Q9UHC9 1359 aa8.75□□□□□ -1.01
VPS53-217ENST00000575100 CASZ1Q86V15 1759 aa8.75□□□□□ -1.01
VPS53-217ENST00000575100 FMNL1O95466 1100 aaPredicted RBP8.74□□□□□ -1.01
VPS53-217ENST00000575100 APBA3O96018 575 aa8.74□□□□□ -1.01
VPS53-217ENST00000575100 FBLN1P23142 703 aa8.74□□□□□ -1.01
VPS53-217ENST00000575100 PDE3BQ13370 1112 aa8.74□□□□□ -1.01
VPS53-217ENST00000575100 TCP11L2Q8N4U5 519 aa8.74□□□□□ -1.01
VPS53-217ENST00000575100 DUSP9Q99956 384 aaKnown RBP8.74□□□□□ -1.01
VPS53-217ENST00000575100 ANP32EQ9BTT0 268 aa8.74□□□□□ -1.01
VPS53-217ENST00000575100 TMEM121BQ9BXQ6 578 aaPredicted RBP8.74□□□□□ -1.01
VPS53-217ENST00000575100 EDC4Q6P2E9 1401 aaKnown RBP8.74□□□□□ -1.01
VPS53-217ENST00000575100 K7ELQ4 463 aaPredicted RBP8.73□□□□□ -1.01
VPS53-217ENST00000575100 FDX1P10109 184 aa8.73□□□□□ -1.01
VPS53-217ENST00000575100 TNNT2P45379 298 aaPredicted RBP8.73□□□□□ -1.01
VPS53-217ENST00000575100 SERINC3Q13530 473 aa8.73□□□□□ -1.01
VPS53-217ENST00000575100 MTMR3Q13615 1198 aa8.73□□□□□ -1.01
VPS53-217ENST00000575100 SCYL1Q96KG9 808 aa8.73□□□□□ -1.01
VPS53-217ENST00000575100 TTF2Q9UNY4 1162 aaKnown RBP8.73□□□□□ -1.01
VPS53-217ENST00000575100 COMMD10Q9Y6G5 202 aa8.73□□□□□ -1.01
VPS53-217ENST00000575100 CGNL1Q0VF96 1302 aa8.73□□□□□ -1.01
VPS53-217ENST00000575100 PIK3C2AO00443 1686 aa8.73□□□□□ -1.01
VPS53-217ENST00000575100 RCCD1A6NED2 376 aa8.73□□□□□ -1.01
VPS53-217ENST00000575100 DDX11L8A8MPP1 907 aa8.73□□□□□ -1.01
VPS53-217ENST00000575100 CFAP99D6REC4 459 aa8.73□□□□□ -1.01
VPS53-217ENST00000575100 FBXO45P0C2W1 286 aa8.73□□□□□ -1.01
VPS53-217ENST00000575100 FAM43BQ6ZT52 329 aaPredicted RBP8.73□□□□□ -1.01
VPS53-217ENST00000575100 RNPC3Q96LT9 517 aaKnown RBP8.73□□□□□ -1.01
VPS53-217ENST00000575100 FRMD6Q96NE9 622 aa8.73□□□□□ -1.01
VPS53-217ENST00000575100 SEPT3Q9UH03 358 aa8.73□□□□□ -1.01
VPS53-217ENST00000575100 DDX41Q9UJV9 622 aaKnown RBP8.73□□□□□ -1.01
VPS53-217ENST00000575100 TTC21BQ7Z4L5 1316 aa8.73□□□□□ -1.01
VPS53-217ENST00000575100 CRB1P82279 1406 aa8.72□□□□□ -1.01
VPS53-217ENST00000575100 MYBBP1AQ9BQG0 1328 aaKnown RBP8.72□□□□□ -1.01
VPS53-217ENST00000575100 CCER2I3L3R5 266 aa8.72□□□□□ -1.01
VPS53-217ENST00000575100 DKK1O94907 266 aa8.72□□□□□ -1.01
VPS53-217ENST00000575100 LDHBP07195 334 aaKnown RBP8.72□□□□□ -1.01
VPS53-217ENST00000575100 MCCP23508 829 aa8.72□□□□□ -1.01
VPS53-217ENST00000575100 PPP2R1AP30153 589 aa8.72□□□□□ -1.01
VPS53-217ENST00000575100 CLDN10P78369 228 aa8.72□□□□□ -1.01
VPS53-217ENST00000575100 NUTM2GQ5VZR2 741 aa8.72□□□□□ -1.01
VPS53-217ENST00000575100 OGFOD1Q8N543 542 aa8.72□□□□□ -1.01
VPS53-217ENST00000575100 VTI1BQ9UEU0 232 aa8.72□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms