RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 UTP3Q9NQZ2 479 aaKnown RBP eCLIP6.66□□□□□ -1.34
LDLR-209ENST00000558528 SEPT3Q9UH03 358 aa6.66□□□□□ -1.34
LDLR-209ENST00000558528 NUP188Q5SRE5 1749 aa6.66□□□□□ -1.34
LDLR-209ENST00000558528 SHANK3Q9BYB0 1731 aa6.66□□□□□ -1.34
LDLR-209ENST00000558528 AATKQ6ZMQ8 1374 aa6.66□□□□□ -1.34
LDLR-209ENST00000558528 C1orf167Q5SNV9 1468 aa6.66□□□□□ -1.34
LDLR-209ENST00000558528 XRN1Q8IZH2 1706 aaKnown RBP6.65□□□□□ -1.34
LDLR-209ENST00000558528 SFI1A8K8P3 1242 aa6.65□□□□□ -1.34
LDLR-209ENST00000558528 ATP2B1P20020 1258 aa6.65□□□□□ -1.34
LDLR-209ENST00000558528 HNRNPUQ00839 825 aaKnown RBP eCLIP6.65□□□□□ -1.34
LDLR-209ENST00000558528 ATP2B2Q01814 1243 aa6.65□□□□□ -1.34
LDLR-209ENST00000558528 PDE3BQ13370 1112 aa6.65□□□□□ -1.34
LDLR-209ENST00000558528 MSS51Q4VC12 460 aa6.65□□□□□ -1.34
LDLR-209ENST00000558528 SOGA3Q5TF21 947 aa6.65□□□□□ -1.34
LDLR-209ENST00000558528 ALKBH2Q6NS38 261 aa6.65□□□□□ -1.34
LDLR-209ENST00000558528 BLOC1S3Q6QNY0 202 aa6.65□□□□□ -1.34
LDLR-209ENST00000558528 TMC7Q7Z402 723 aa6.65□□□□□ -1.34
LDLR-209ENST00000558528 TMC4Q7Z404 712 aa6.65□□□□□ -1.34
LDLR-209ENST00000558528 ABTB2Q8N961 1025 aa6.65□□□□□ -1.34
LDLR-209ENST00000558528 TMEM87AQ8NBN3 555 aa6.65□□□□□ -1.34
LDLR-209ENST00000558528 RNF34Q969K3 372 aa6.65□□□□□ -1.34
LDLR-209ENST00000558528 OCSTAMPQ9BR26 566 aa6.65□□□□□ -1.34
LDLR-209ENST00000558528 BRPF3Q9ULD4 1205 aa6.65□□□□□ -1.34
LDLR-209ENST00000558528 NPHP3Q7Z494 1330 aa6.65□□□□□ -1.35
LDLR-209ENST00000558528 USP31Q70CQ4 1352 aa6.65□□□□□ -1.35
LDLR-209ENST00000558528 USP6P35125 1406 aa6.65□□□□□ -1.35
LDLR-209ENST00000558528 NRKQ7Z2Y5 1582 aa6.65□□□□□ -1.35
LDLR-209ENST00000558528 SNPHO15079 494 aa6.64□□□□□ -1.35
LDLR-209ENST00000558528 SORBS3O60504 671 aa6.64□□□□□ -1.35
LDLR-209ENST00000558528 DIAPH1O60610 1272 aaKnown RBP6.64□□□□□ -1.35
LDLR-209ENST00000558528 HOXB1P14653 301 aaPredicted RBP6.64□□□□□ -1.35
LDLR-209ENST00000558528 IGFBP4P22692 258 aa6.64□□□□□ -1.35
LDLR-209ENST00000558528 RAD51AP2Q09MP3 1159 aa6.64□□□□□ -1.35
LDLR-209ENST00000558528 COL13A1Q5TAT6 717 aaPredicted RBP6.64□□□□□ -1.35
LDLR-209ENST00000558528 KRT28Q7Z3Y7 464 aa6.64□□□□□ -1.35
LDLR-209ENST00000558528 NT5DC4Q86YG4 428 aa6.64□□□□□ -1.35
LDLR-209ENST00000558528 CCDC85AQ96PX6 553 aaPredicted RBP6.64□□□□□ -1.35
LDLR-209ENST00000558528 NUDT12Q9BQG2 462 aa6.64□□□□□ -1.35
LDLR-209ENST00000558528 TINF2Q9BSI4 451 aa6.64□□□□□ -1.35
LDLR-209ENST00000558528 MKNK1Q9BUB5 465 aa6.64□□□□□ -1.35
LDLR-209ENST00000558528 PCDHGA11Q9Y5H2 935 aa6.64□□□□□ -1.35
LDLR-209ENST00000558528 CD163L1Q9NR16 1453 aa6.64□□□□□ -1.35
LDLR-209ENST00000558528 CDC42BPGQ6DT37 1551 aa6.64□□□□□ -1.35
LDLR-209ENST00000558528 PCNTO95613 3336 aa6.64□□□□□ -1.35
LDLR-209ENST00000558528 ARHGAP33O14559 1287 aa6.63□□□□□ -1.35
LDLR-209ENST00000558528 LDHBP07195 334 aaKnown RBP6.63□□□□□ -1.35
LDLR-209ENST00000558528 TNNT2P45379 298 aaPredicted RBP6.63□□□□□ -1.35
LDLR-209ENST00000558528 MYOM1P52179 1685 aa6.63□□□□□ -1.35
LDLR-209ENST00000558528 FKBP5Q13451 457 aaPredicted RBP6.63□□□□□ -1.35
LDLR-209ENST00000558528 NBPF20Q3BBV1 942 aa6.63□□□□□ -1.35
LDLR-209ENST00000558528 CCDC184Q52MB2 194 aa6.63□□□□□ -1.35
LDLR-209ENST00000558528 KIF24Q5T7B8 1368 aa6.63□□□□□ -1.35
LDLR-209ENST00000558528 GIMAP6Q6P9H5 292 aa6.63□□□□□ -1.35
LDLR-209ENST00000558528 ZBED9Q6R2W3 1325 aa6.63□□□□□ -1.35
LDLR-209ENST00000558528 NME9Q86XW9 330 aa6.63□□□□□ -1.35
LDLR-209ENST00000558528 NALCNQ8IZF0 1738 aa6.63□□□□□ -1.35
LDLR-209ENST00000558528 USP32Q8NFA0 1604 aa6.63□□□□□ -1.35
LDLR-209ENST00000558528 GAS2L2Q8NHY3 880 aa6.63□□□□□ -1.35
LDLR-209ENST00000558528 LRCH3Q96II8 777 aa6.63□□□□□ -1.35
LDLR-209ENST00000558528 PRKD2Q9BZL6 878 aa6.63□□□□□ -1.35
LDLR-209ENST00000558528 PRKAG2Q9UGJ0 569 aa6.63□□□□□ -1.35
LDLR-209ENST00000558528 CASZ1Q86V15 1759 aa6.62□□□□□ -1.35
LDLR-209ENST00000558528 DXOO77932 396 aaKnown RBP6.62□□□□□ -1.35
LDLR-209ENST00000558528 ZNF76P36508 570 aa6.62□□□□□ -1.35
LDLR-209ENST00000558528 PLCB3Q01970 1234 aa6.62□□□□□ -1.35
LDLR-209ENST00000558528 SH3BP5LQ7L8J4 393 aa6.62□□□□□ -1.35
LDLR-209ENST00000558528 METTL16Q86W50 562 aaKnown RBP6.62□□□□□ -1.35
LDLR-209ENST00000558528 RUNDC1Q96C34 613 aa6.62□□□□□ -1.35
LDLR-209ENST00000558528 THAP11Q96EK4 314 aa6.62□□□□□ -1.35
LDLR-209ENST00000558528 POLKQ9UBT6 870 aa6.62□□□□□ -1.35
LDLR-209ENST00000558528 CDV3Q9UKY7 258 aaKnown RBP6.62□□□□□ -1.35
LDLR-209ENST00000558528 ADAMTS8Q9UP79 889 aa6.62□□□□□ -1.35
LDLR-209ENST00000558528 NWD2Q9ULI1 1742 aa6.62□□□□□ -1.35
LDLR-209ENST00000558528 PXDNQ92626 1479 aa6.61□□□□□ -1.35
LDLR-209ENST00000558528 SSH2Q76I76 1423 aa6.61□□□□□ -1.35
LDLR-209ENST00000558528 SBNO1A3KN83 1393 aa6.61□□□□□ -1.35
LDLR-209ENST00000558528 MYCP01106 439 aaPredicted RBP6.61□□□□□ -1.35
LDLR-209ENST00000558528 U2AF1L5P0DN76 240 aaPredicted RBP6.61□□□□□ -1.35
LDLR-209ENST00000558528 PBX2P40425 430 aa6.61□□□□□ -1.35
LDLR-209ENST00000558528 AMPHP49418 695 aa6.61□□□□□ -1.35
LDLR-209ENST00000558528 MMP16P51512 607 aa6.61□□□□□ -1.35
LDLR-209ENST00000558528 DAB2P98082 770 aa6.61□□□□□ -1.35
LDLR-209ENST00000558528 FANCCQ00597 558 aa6.61□□□□□ -1.35
LDLR-209ENST00000558528 U2AF1Q01081 240 aaKnown RBP eCLIP6.61□□□□□ -1.35
LDLR-209ENST00000558528 PSMD2Q13200 908 aa6.61□□□□□ -1.35
LDLR-209ENST00000558528 VTI1AQ96AJ9 217 aa6.61□□□□□ -1.35
LDLR-209ENST00000558528 ALKBH8Q96BT7 664 aaKnown RBP6.61□□□□□ -1.35
LDLR-209ENST00000558528 ZFRQ96KR1 1074 aaKnown RBP6.61□□□□□ -1.35
LDLR-209ENST00000558528 ORAI2Q96SN7 254 aa6.61□□□□□ -1.35
LDLR-209ENST00000558528 GMLQ99445 158 aa6.61□□□□□ -1.35
LDLR-209ENST00000558528 SYT17Q9BSW7 474 aa6.61□□□□□ -1.35
LDLR-209ENST00000558528 LNPKQ9C0E8 428 aa6.61□□□□□ -1.35
LDLR-209ENST00000558528 VTI1BQ9UEU0 232 aa6.61□□□□□ -1.35
LDLR-209ENST00000558528 PARP2Q9UGN5 583 aa6.61□□□□□ -1.35
LDLR-209ENST00000558528 MAPK8IP3Q9UPT6 1336 aa6.6□□□□□ -1.35
LDLR-209ENST00000558528 TLDC2A0PJX2 215 aa6.6□□□□□ -1.35
LDLR-209ENST00000558528 FAM83GA6ND36 823 aa6.6□□□□□ -1.35
LDLR-209ENST00000558528 MTMR3Q13615 1198 aa6.6□□□□□ -1.35
LDLR-209ENST00000558528 DSC3Q14574 896 aa6.6□□□□□ -1.35
LDLR-209ENST00000558528 TSGA10IPQ3SY00 556 aa6.6□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms