RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 UBL7Q96S82 380 aaPredicted RBP8.38□□□□□ -1.07
SCFD1-216ENST00000555550 RBSNQ9H1K0 784 aa8.38□□□□□ -1.07
SCFD1-216ENST00000555550 UTP3Q9NQZ2 479 aaKnown RBP eCLIP8.38□□□□□ -1.07
SCFD1-216ENST00000555550 CD97P48960 835 aa8.37□□□□□ -1.07
SCFD1-216ENST00000555550 TMEM132AQ24JP5 1023 aa8.37□□□□□ -1.07
SCFD1-216ENST00000555550 GALNT11Q8NCW6 608 aa8.37□□□□□ -1.07
SCFD1-216ENST00000555550 PRIMPOLQ96LW4 560 aa8.37□□□□□ -1.07
SCFD1-216ENST00000555550 RAXQ9Y2V3 346 aa8.37□□□□□ -1.07
SCFD1-216ENST00000555550 COL17A1Q9UMD9 1497 aaPredicted RBP8.37□□□□□ -1.07
SCFD1-216ENST00000555550 LINC01387J3KSC0 135 aa8.36□□□□□ -1.07
SCFD1-216ENST00000555550 CDC25BP30305 580 aa8.36□□□□□ -1.07
SCFD1-216ENST00000555550 STOML1Q9UBI4 398 aa8.36□□□□□ -1.07
SCFD1-216ENST00000555550 PPME1Q9Y570 386 aa8.36□□□□□ -1.07
SCFD1-216ENST00000555550 BTBD11A6QL63 1104 aa8.35□□□□□ -1.07
SCFD1-216ENST00000555550 PTCD1O75127 700 aaKnown RBP8.35□□□□□ -1.07
SCFD1-216ENST00000555550 TGFB1P01137 390 aa8.35□□□□□ -1.07
SCFD1-216ENST00000555550 FKBP5Q13451 457 aaPredicted RBP8.35□□□□□ -1.07
SCFD1-216ENST00000555550 FAM26DQ5JW98 314 aa8.35□□□□□ -1.07
SCFD1-216ENST00000555550 TXNDC11Q6PKC3 985 aa8.35□□□□□ -1.07
SCFD1-216ENST00000555550 ETFBKMTQ8IXQ9 262 aa8.35□□□□□ -1.07
SCFD1-216ENST00000555550 SAP130Q9H0E3 1048 aa8.35□□□□□ -1.07
SCFD1-216ENST00000555550 WISP1O95388 367 aa8.34□□□□□ -1.07
SCFD1-216ENST00000555550 IGLV1-40P01703 118 aa8.34□□□□□ -1.07
SCFD1-216ENST00000555550 RFX1P22670 979 aa8.34□□□□□ -1.07
SCFD1-216ENST00000555550 SOX18P35713 384 aa8.34□□□□□ -1.07
SCFD1-216ENST00000555550 TRIP4Q15650 581 aaPredicted RBP8.34□□□□□ -1.07
SCFD1-216ENST00000555550 COL13A1Q5TAT6 717 aaPredicted RBP8.34□□□□□ -1.07
SCFD1-216ENST00000555550 Q6ZS46 218 aa8.34□□□□□ -1.07
SCFD1-216ENST00000555550 ZC3HAV1Q7Z2W4 902 aaKnown RBP8.34□□□□□ -1.07
SCFD1-216ENST00000555550 NLRP13Q86W25 1043 aa8.34□□□□□ -1.07
SCFD1-216ENST00000555550 LACRTQ9GZZ8 138 aa8.34□□□□□ -1.07
SCFD1-216ENST00000555550 SRA1Q9HD15 236 aaKnown RBP8.34□□□□□ -1.07
SCFD1-216ENST00000555550 KCNK4Q9NYG8 393 aa8.34□□□□□ -1.07
SCFD1-216ENST00000555550 ATP11AP98196 1134 aa8.33□□□□□ -1.08
SCFD1-216ENST00000555550 MAP4K3Q8IVH8 894 aa8.33□□□□□ -1.08
SCFD1-216ENST00000555550 PRMT3O60678 531 aa8.32□□□□□ -1.08
SCFD1-216ENST00000555550 HOXD8P13378 290 aaPredicted RBP8.32□□□□□ -1.08
SCFD1-216ENST00000555550 IRAK1P51617 712 aa8.32□□□□□ -1.08
SCFD1-216ENST00000555550 CEP135Q66GS9 1140 aa8.32□□□□□ -1.08
SCFD1-216ENST00000555550 ADAMTSL4Q6UY14 1074 aa8.32□□□□□ -1.08
SCFD1-216ENST00000555550 ARMC10Q8N2F6 343 aa8.32□□□□□ -1.08
SCFD1-216ENST00000555550 MUC3BQ9H195 1237 aa8.32□□□□□ -1.08
SCFD1-216ENST00000555550 OAS3Q9Y6K5 1087 aaKnown RBP8.32□□□□□ -1.08
SCFD1-216ENST00000555550 UBAP1LF5GYI3 381 aa8.31□□□□□ -1.08
SCFD1-216ENST00000555550 PAX4O43316 350 aa8.31□□□□□ -1.08
SCFD1-216ENST00000555550 COBLO75128 1261 aa8.31□□□□□ -1.08
SCFD1-216ENST00000555550 CD68P34810 354 aaPredicted RBP8.31□□□□□ -1.08
SCFD1-216ENST00000555550 CFAP70Q5T0N1 1121 aa8.31□□□□□ -1.08
SCFD1-216ENST00000555550 A6NJR5 290 aa8.3□□□□□ -1.08
SCFD1-216ENST00000555550 DHX15O43143 795 aaKnown RBP8.3□□□□□ -1.08
SCFD1-216ENST00000555550 ADAMTS4O75173 837 aa8.3□□□□□ -1.08
SCFD1-216ENST00000555550 BRD2P25440 801 aaKnown RBP8.3□□□□□ -1.08
SCFD1-216ENST00000555550 CAPN12Q6ZSI9 719 aa8.3□□□□□ -1.08
SCFD1-216ENST00000555550 ACAD11Q709F0 780 aa8.3□□□□□ -1.08
SCFD1-216ENST00000555550 OR13H1Q8NG92 308 aa8.3□□□□□ -1.08
SCFD1-216ENST00000555550 DCAF11Q8TEB1 546 aa8.3□□□□□ -1.08
SCFD1-216ENST00000555550 CARD10Q9BWT7 1032 aa8.3□□□□□ -1.08
SCFD1-216ENST00000555550 GSC2O15499 205 aa8.29□□□□□ -1.08
SCFD1-216ENST00000555550 DDX3YO15523 660 aaKnown RBP8.29□□□□□ -1.08
SCFD1-216ENST00000555550 TAL1P17542 331 aaPredicted RBP8.29□□□□□ -1.08
SCFD1-216ENST00000555550 GP2P55259 537 aaKnown RBP8.29□□□□□ -1.08
SCFD1-216ENST00000555550 ZDHHC13Q8IUH4 622 aa8.29□□□□□ -1.08
SCFD1-216ENST00000555550 TRIM42Q8IWZ5 723 aa8.29□□□□□ -1.08
SCFD1-216ENST00000555550 SPACA7Q96KW9 195 aa8.29□□□□□ -1.08
SCFD1-216ENST00000555550 RASSF4Q9H2L5 321 aa8.29□□□□□ -1.08
SCFD1-216ENST00000555550 NOVA2Q9UNW9 492 aaKnown RBP8.29□□□□□ -1.08
SCFD1-216ENST00000555550 HMX2A2RU54 273 aa8.28□□□□□ -1.08
SCFD1-216ENST00000555550 TM4SF5O14894 197 aa8.28□□□□□ -1.08
SCFD1-216ENST00000555550 CDC27P30260 824 aa8.28□□□□□ -1.08
SCFD1-216ENST00000555550 HYAL2Q12891 473 aa8.28□□□□□ -1.08
SCFD1-216ENST00000555550 NAA30Q147X3 362 aaPredicted RBP8.28□□□□□ -1.08
SCFD1-216ENST00000555550 C16orf46Q6P387 395 aa8.28□□□□□ -1.08
SCFD1-216ENST00000555550 CACTIN-AS1Q8N1I8 211 aa8.28□□□□□ -1.08
SCFD1-216ENST00000555550 PIK3R5Q8WYR1 880 aa8.28□□□□□ -1.08
SCFD1-216ENST00000555550 KIAA1324LA8MWY0 1029 aaPredicted RBP8.27□□□□□ -1.09
SCFD1-216ENST00000555550 SCNN1AP37088 669 aa8.27□□□□□ -1.09
SCFD1-216ENST00000555550 TXKP42681 527 aa8.27□□□□□ -1.09
SCFD1-216ENST00000555550 NFIAQ12857 509 aa8.27□□□□□ -1.09
SCFD1-216ENST00000555550 DUOXA2Q1HG44 320 aa8.27□□□□□ -1.09
SCFD1-216ENST00000555550 TTC39BQ5VTQ0 682 aaPredicted RBP8.27□□□□□ -1.09
SCFD1-216ENST00000555550 KIAA1211Q6ZU35 1233 aa8.27□□□□□ -1.09
SCFD1-216ENST00000555550 UTP4Q969X6 686 aaKnown RBP8.27□□□□□ -1.09
SCFD1-216ENST00000555550 CEP41Q9BYV8 373 aa8.27□□□□□ -1.09
SCFD1-216ENST00000555550 C7orf69Q9H7B7 122 aa8.27□□□□□ -1.09
SCFD1-216ENST00000555550 SH2B1Q9NRF2 756 aaPredicted RBP8.27□□□□□ -1.09
SCFD1-216ENST00000555550 ZNF777Q9ULD5 760 aaPredicted RBP8.27□□□□□ -1.09
SCFD1-216ENST00000555550 FSCN2O14926 492 aa8.26□□□□□ -1.09
SCFD1-216ENST00000555550 SMNDC1O75940 238 aaKnown RBP eCLIP8.26□□□□□ -1.09
SCFD1-216ENST00000555550 CYP2E1P05181 493 aaPredicted RBP8.26□□□□□ -1.09
SCFD1-216ENST00000555550 OCLNQ16625 522 aa8.26□□□□□ -1.09
SCFD1-216ENST00000555550 FMNL2Q96PY5 1086 aa8.26□□□□□ -1.09
SCFD1-216ENST00000555550 MKNK1Q9BUB5 465 aa8.26□□□□□ -1.09
SCFD1-216ENST00000555550 TNFRSF10BO14763 440 aa8.25□□□□□ -1.09
SCFD1-216ENST00000555550 GPR152Q8TDT2 470 aa8.25□□□□□ -1.09
SCFD1-216ENST00000555550 KLHDC7BQ96G42 594 aa8.25□□□□□ -1.09
SCFD1-216ENST00000555550 FAM46AQ96IP4 442 aaKnown RBP8.25□□□□□ -1.09
SCFD1-216ENST00000555550 KRTAP4-8A0A0G2JLE6 195 aa8.24□□□□□ -1.09
SCFD1-216ENST00000555550 ZBTB39O15060 712 aa8.24□□□□□ -1.09
SCFD1-216ENST00000555550 ADAM11O75078 769 aa8.24□□□□□ -1.09
SCFD1-216ENST00000555550 EPHA1P21709 976 aa8.24□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms