RNA–Protein interactions for RNA: ENST00000554805.6

SYNE2-213, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 3,481 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-213ENST00000554805 PDIA6Q15084 440 aa11.18□□□□□ -0.62
SYNE2-213ENST00000554805 SLFNL1Q499Z3 407 aa11.18□□□□□ -0.62
SYNE2-213ENST00000554805 LMBR1LQ6UX01 489 aa11.18□□□□□ -0.62
SYNE2-213ENST00000554805 CHST3Q7LGC8 479 aa11.18□□□□□ -0.62
SYNE2-213ENST00000554805 ZNF330Q9Y3S2 320 aaPredicted RBP11.18□□□□□ -0.62
SYNE2-213ENST00000554805 CACNA1FO60840 1977 aa11.18□□□□□ -0.62
SYNE2-213ENST00000554805 CYP21A2P08686 494 aa11.18□□□□□ -0.62
SYNE2-213ENST00000554805 TNNT1P13805 278 aa11.18□□□□□ -0.62
SYNE2-213ENST00000554805 SF3A1Q15459 793 aaKnown RBP11.18□□□□□ -0.62
SYNE2-213ENST00000554805 FILIP1Q7Z7B0 1213 aa11.18□□□□□ -0.62
SYNE2-213ENST00000554805 A0A087WWV3 80 aa11.17□□□□□ -0.62
SYNE2-213ENST00000554805 ZNF710Q8N1W2 664 aa11.17□□□□□ -0.62
SYNE2-213ENST00000554805 FTOQ9C0B1 505 aaKnown RBP eCLIP11.17□□□□□ -0.62
SYNE2-213ENST00000554805 ZSCAN16Q9H4T2 348 aaPredicted RBP11.17□□□□□ -0.62
SYNE2-213ENST00000554805 PXDNQ92626 1479 aa11.17□□□□□ -0.62
SYNE2-213ENST00000554805 RESTQ13127 1097 aa11.17□□□□□ -0.62
SYNE2-213ENST00000554805 GORABQ5T7V8 394 aa11.17□□□□□ -0.62
SYNE2-213ENST00000554805 SLC52A2Q9HAB3 445 aa11.17□□□□□ -0.62
SYNE2-213ENST00000554805 NCOA5Q9HCD5 579 aaKnown RBP11.17□□□□□ -0.62
SYNE2-213ENST00000554805 LRRC37A3O60309 1634 aa11.17□□□□□ -0.62
SYNE2-213ENST00000554805 MED23Q9ULK4 1368 aa11.17□□□□□ -0.62
SYNE2-213ENST00000554805 SNRPA1P09661 255 aaKnown RBP11.17□□□□□ -0.62
SYNE2-213ENST00000554805 PTPN12Q05209 780 aaKnown RBP11.17□□□□□ -0.62
SYNE2-213ENST00000554805 SCRN1Q12765 414 aa11.17□□□□□ -0.62
SYNE2-213ENST00000554805 SDF4Q9BRK5 362 aa11.17□□□□□ -0.62
SYNE2-213ENST00000554805 COPRSQ9NQ92 184 aa11.17□□□□□ -0.62
SYNE2-213ENST00000554805 PTPDC1A2A3K4 754 aa11.16□□□□□ -0.62
SYNE2-213ENST00000554805 TIMM10P62072 90 aa11.16□□□□□ -0.62
SYNE2-213ENST00000554805 ZNF396Q96N95 335 aaPredicted RBP11.16□□□□□ -0.62
SYNE2-213ENST00000554805 ERCC4Q92889 916 aaPredicted RBP11.16□□□□□ -0.62
SYNE2-213ENST00000554805 CABP4P57796 275 aa11.15□□□□□ -0.62
SYNE2-213ENST00000554805 ZSCAN25Q6NSZ9 544 aa11.15□□□□□ -0.62
SYNE2-213ENST00000554805 DHX32Q7L7V1 743 aaKnown RBP11.15□□□□□ -0.62
SYNE2-213ENST00000554805 FSIP1Q8NA03 581 aa11.15□□□□□ -0.62
SYNE2-213ENST00000554805 FER1L4A9Z1Z3 1794 aa11.15□□□□□ -0.62
SYNE2-213ENST00000554805 UTYO14607 1347 aa11.15□□□□□ -0.62
SYNE2-213ENST00000554805 WASHC4Q2M389 1173 aa11.15□□□□□ -0.62
SYNE2-213ENST00000554805 CCDC112Q8NEF3 446 aa11.15□□□□□ -0.62
SYNE2-213ENST00000554805 TDRD7Q8NHU6 1098 aaKnown RBP11.15□□□□□ -0.62
SYNE2-213ENST00000554805 FKBP4Q02790 459 aaKnown RBP eCLIP11.15□□□□□ -0.63
SYNE2-213ENST00000554805 RAB11FIP4Q86YS3 637 aa11.15□□□□□ -0.63
SYNE2-213ENST00000554805 FMNL2Q96PY5 1086 aa11.15□□□□□ -0.63
SYNE2-213ENST00000554805 NPHP4O75161 1426 aaPredicted RBP11.15□□□□□ -0.63
SYNE2-213ENST00000554805 ARHGAP23Q9P227 1491 aa11.14□□□□□ -0.63
SYNE2-213ENST00000554805 STX1AQ16623 288 aa11.14□□□□□ -0.63
SYNE2-213ENST00000554805 TSGA10IPQ3SY00 556 aa11.14□□□□□ -0.63
SYNE2-213ENST00000554805 IFNL2Q8IZJ0 200 aa11.14□□□□□ -0.63
SYNE2-213ENST00000554805 KBTBD3Q8NAB2 608 aa11.14□□□□□ -0.63
SYNE2-213ENST00000554805 HAUS7Q99871 368 aa11.14□□□□□ -0.63
SYNE2-213ENST00000554805 SNRKQ9NRH2 765 aa11.14□□□□□ -0.63
SYNE2-213ENST00000554805 PAG1Q9NWQ8 432 aa11.14□□□□□ -0.63
SYNE2-213ENST00000554805 TRMT1Q9NXH9 659 aaKnown RBP11.14□□□□□ -0.63
SYNE2-213ENST00000554805 HMGB1P09429 215 aaKnown RBP11.14□□□□□ -0.63
SYNE2-213ENST00000554805 IFIT1P09914 478 aaKnown RBP11.14□□□□□ -0.63
SYNE2-213ENST00000554805 C11orf57Q6ZUT1 292 aaPredicted RBP11.14□□□□□ -0.63
SYNE2-213ENST00000554805 SMAP1Q8IYB5 467 aaPredicted RBP11.14□□□□□ -0.63
SYNE2-213ENST00000554805 CACTINQ8WUQ7 758 aaKnown RBP11.14□□□□□ -0.63
SYNE2-213ENST00000554805 USP28Q96RU2 1077 aa11.14□□□□□ -0.63
SYNE2-213ENST00000554805 ALDH8A1Q9H2A2 487 aaPredicted RBP11.14□□□□□ -0.63
SYNE2-213ENST00000554805 GTF2F1P35269 517 aaKnown RBP eCLIP11.14□□□□□ -0.63
SYNE2-213ENST00000554805 HAND2P61296 217 aa11.14□□□□□ -0.63
SYNE2-213ENST00000554805 STK38Q15208 465 aa11.14□□□□□ -0.63
SYNE2-213ENST00000554805 STOX1Q6ZVD7 989 aa11.14□□□□□ -0.63
SYNE2-213ENST00000554805 CCDC85AQ96PX6 553 aaPredicted RBP11.14□□□□□ -0.63
SYNE2-213ENST00000554805 ZHX1Q9UKY1 873 aaPredicted RBP11.14□□□□□ -0.63
SYNE2-213ENST00000554805 SLIT1O75093 1534 aa11.14□□□□□ -0.63
SYNE2-213ENST00000554805 PHKG2P15735 406 aa11.13□□□□□ -0.63
SYNE2-213ENST00000554805 U2AF2P26368 475 aaKnown RBP eCLIP11.13□□□□□ -0.63
SYNE2-213ENST00000554805 USPL1Q5W0Q7 1092 aa11.13□□□□□ -0.63
SYNE2-213ENST00000554805 OTUD7BQ6GQQ9 843 aa11.13□□□□□ -0.63
SYNE2-213ENST00000554805 NSUN7Q8NE18 718 aaKnown RBP11.13□□□□□ -0.63
SYNE2-213ENST00000554805 NCAPD2Q15021 1401 aa11.13□□□□□ -0.63
SYNE2-213ENST00000554805 ADGRL3Q9HAR2 1447 aa11.13□□□□□ -0.63
SYNE2-213ENST00000554805 PFKFB2O60825 505 aa11.13□□□□□ -0.63
SYNE2-213ENST00000554805 ARID5BQ14865 1188 aa11.13□□□□□ -0.63
SYNE2-213ENST00000554805 CEP57L1Q8IYX8 460 aa11.13□□□□□ -0.63
SYNE2-213ENST00000554805 ZNF594Q96JF6 807 aaPredicted RBP11.13□□□□□ -0.63
SYNE2-213ENST00000554805 ZBTB3Q9H5J0 574 aa11.13□□□□□ -0.63
SYNE2-213ENST00000554805 ANO10Q9NW15 660 aa11.13□□□□□ -0.63
SYNE2-213ENST00000554805 ZNF609O15014 1411 aa11.13□□□□□ -0.63
SYNE2-213ENST00000554805 ZNF335Q9H4Z2 1342 aaPredicted RBP11.13□□□□□ -0.63
SYNE2-213ENST00000554805 CPLX1O14810 134 aa11.12□□□□□ -0.63
SYNE2-213ENST00000554805 CTAGE5O15320 804 aa11.12□□□□□ -0.63
SYNE2-213ENST00000554805 POLR3DP05423 398 aaPredicted RBP11.12□□□□□ -0.63
SYNE2-213ENST00000554805 RFX5P48382 616 aaPredicted RBP11.12□□□□□ -0.63
SYNE2-213ENST00000554805 CCDC144BQ3MJ40 725 aa11.12□□□□□ -0.63
SYNE2-213ENST00000554805 ARHGAP30Q7Z6I6 1101 aaPredicted RBP11.12□□□□□ -0.63
SYNE2-213ENST00000554805 CCDC144CPQ8IYA2 1237 aa11.12□□□□□ -0.63
SYNE2-213ENST00000554805 TAF7LQ5H9L4 462 aa11.12□□□□□ -0.63
SYNE2-213ENST00000554805 TTLL5Q6EMB2 1281 aa11.12□□□□□ -0.63
SYNE2-213ENST00000554805 PLA2G4DQ86XP0 818 aa11.12□□□□□ -0.63
SYNE2-213ENST00000554805 AOPEPQ8N6M6 819 aa11.12□□□□□ -0.63
SYNE2-213ENST00000554805 COL15A1P39059 1388 aa11.12□□□□□ -0.63
SYNE2-213ENST00000554805 A0A0G2JLW4 131 aa11.12□□□□□ -0.63
SYNE2-213ENST00000554805 SMC2O95347 1197 aa11.12□□□□□ -0.63
SYNE2-213ENST00000554805 CAVIN2O95810 425 aa11.12□□□□□ -0.63
SYNE2-213ENST00000554805 SKILP12757 684 aa11.12□□□□□ -0.63
SYNE2-213ENST00000554805 ATP2B3Q16720 1220 aa11.12□□□□□ -0.63
SYNE2-213ENST00000554805 LLPHQ9BRT6 129 aaKnown RBP11.12□□□□□ -0.63
SYNE2-213ENST00000554805 STRN4Q9NRL3 753 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms