RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 CCDC144CPQ8IYA2 1237 aa10.9□□□□□ -0.66
LIMCH1-215ENST00000512632 HEG1Q9ULI3 1381 aa10.9□□□□□ -0.66
LIMCH1-215ENST00000512632 GOLIM4O00461 696 aa10.9□□□□□ -0.66
LIMCH1-215ENST00000512632 TNNT1P13805 278 aa10.9□□□□□ -0.66
LIMCH1-215ENST00000512632 MCMDC2Q4G0Z9 681 aa10.9□□□□□ -0.66
LIMCH1-215ENST00000512632 LMBR1LQ6UX01 489 aa10.9□□□□□ -0.66
LIMCH1-215ENST00000512632 COPRSQ9NQ92 184 aa10.9□□□□□ -0.66
LIMCH1-215ENST00000512632 TSGA10IPQ3SY00 556 aa10.9□□□□□ -0.67
LIMCH1-215ENST00000512632 USPL1Q5W0Q7 1092 aa10.9□□□□□ -0.67
LIMCH1-215ENST00000512632 FILIP1Q7Z7B0 1213 aa10.9□□□□□ -0.67
LIMCH1-215ENST00000512632 U3KPZ7 1027 aaPredicted RBP10.9□□□□□ -0.67
LIMCH1-215ENST00000512632 U2AF2P26368 475 aaKnown RBP eCLIP10.89□□□□□ -0.67
LIMCH1-215ENST00000512632 C11orf57Q6ZUT1 292 aaPredicted RBP10.89□□□□□ -0.67
LIMCH1-215ENST00000512632 CCAR1Q8IX12 1150 aaKnown RBP10.89□□□□□ -0.67
LIMCH1-215ENST00000512632 PRDM4Q9UKN5 801 aa10.89□□□□□ -0.67
LIMCH1-215ENST00000512632 ZHX1Q9UKY1 873 aaPredicted RBP10.89□□□□□ -0.67
LIMCH1-215ENST00000512632 RFX5P48382 616 aaPredicted RBP10.89□□□□□ -0.67
LIMCH1-215ENST00000512632 TPD52L1Q16890 204 aaPredicted RBP10.89□□□□□ -0.67
LIMCH1-215ENST00000512632 TDRD7Q8NHU6 1098 aaKnown RBP10.89□□□□□ -0.67
LIMCH1-215ENST00000512632 CFAP45Q9UL16 551 aa10.89□□□□□ -0.67
LIMCH1-215ENST00000512632 SLIT1O75093 1534 aa10.89□□□□□ -0.67
LIMCH1-215ENST00000512632 ANKLE2Q86XL3 938 aa10.89□□□□□ -0.67
LIMCH1-215ENST00000512632 ALDH8A1Q9H2A2 487 aaPredicted RBP10.89□□□□□ -0.67
LIMCH1-215ENST00000512632 USP28Q96RU2 1077 aa10.89□□□□□ -0.67
LIMCH1-215ENST00000512632 SLC52A2Q9HAB3 445 aa10.89□□□□□ -0.67
LIMCH1-215ENST00000512632 BECN2A8MW95 431 aa10.88□□□□□ -0.67
LIMCH1-215ENST00000512632 CSB-PGBD3P0DP91 1061 aa10.88□□□□□ -0.67
LIMCH1-215ENST00000512632 PLA2G4DQ86XP0 818 aa10.88□□□□□ -0.67
LIMCH1-215ENST00000512632 ZNF609O15014 1411 aa10.88□□□□□ -0.67
LIMCH1-215ENST00000512632 PTPDC1A2A3K4 754 aa10.88□□□□□ -0.67
LIMCH1-215ENST00000512632 IGSF3O75054 1194 aa10.88□□□□□ -0.67
LIMCH1-215ENST00000512632 SMAP1Q8IYB5 467 aaPredicted RBP10.88□□□□□ -0.67
LIMCH1-215ENST00000512632 TTC5Q8N0Z6 440 aa10.88□□□□□ -0.67
LIMCH1-215ENST00000512632 ME1P48163 572 aa10.88□□□□□ -0.67
LIMCH1-215ENST00000512632 OTUD7BQ6GQQ9 843 aa10.88□□□□□ -0.67
LIMCH1-215ENST00000512632 KRT28Q7Z3Y7 464 aa10.88□□□□□ -0.67
LIMCH1-215ENST00000512632 RBM43Q6ZSC3 357 aaKnown RBP10.88□□□□□ -0.67
LIMCH1-215ENST00000512632 NSUN7Q8NE18 718 aaKnown RBP10.88□□□□□ -0.67
LIMCH1-215ENST00000512632 ZSCAN16Q9H4T2 348 aaPredicted RBP10.88□□□□□ -0.67
LIMCH1-215ENST00000512632 MED1Q15648 1581 aaPredicted RBP10.87□□□□□ -0.67
LIMCH1-215ENST00000512632 CTDNEP1O95476 244 aa10.87□□□□□ -0.67
LIMCH1-215ENST00000512632 DHX32Q7L7V1 743 aaKnown RBP10.87□□□□□ -0.67
LIMCH1-215ENST00000512632 GOLPH3LQ9H4A5 285 aa10.87□□□□□ -0.67
LIMCH1-215ENST00000512632 GPHNQ9NQX3 736 aaPredicted RBP10.87□□□□□ -0.67
LIMCH1-215ENST00000512632 ADD1P35611 737 aaKnown RBP10.87□□□□□ -0.67
LIMCH1-215ENST00000512632 CCDC73Q6ZRK6 1079 aa10.87□□□□□ -0.67
LIMCH1-215ENST00000512632 HAUS7Q99871 368 aa10.87□□□□□ -0.67
LIMCH1-215ENST00000512632 TRMT1Q9NXH9 659 aaKnown RBP10.87□□□□□ -0.67
LIMCH1-215ENST00000512632 TTLL5Q6EMB2 1281 aa10.87□□□□□ -0.67
LIMCH1-215ENST00000512632 RAB11FIP4Q86YS3 637 aa10.87□□□□□ -0.67
LIMCH1-215ENST00000512632 KBTBD3Q8NAB2 608 aa10.87□□□□□ -0.67
LIMCH1-215ENST00000512632 KINO60870 393 aaKnown RBP10.86□□□□□ -0.67
LIMCH1-215ENST00000512632 IQCB1Q15051 598 aa10.86□□□□□ -0.67
LIMCH1-215ENST00000512632 NFAT5O94916 1531 aa10.86□□□□□ -0.67
LIMCH1-215ENST00000512632 TATP17735 454 aaPredicted RBP10.86□□□□□ -0.67
LIMCH1-215ENST00000512632 FSIP1Q8NA03 581 aa10.86□□□□□ -0.67
LIMCH1-215ENST00000512632 DDX17Q92841 729 aaKnown RBP10.86□□□□□ -0.67
LIMCH1-215ENST00000512632 ZNF594Q96JF6 807 aaPredicted RBP10.86□□□□□ -0.67
LIMCH1-215ENST00000512632 SNRPA1P09661 255 aaKnown RBP10.86□□□□□ -0.67
LIMCH1-215ENST00000512632 KLHL34Q8N239 644 aa10.86□□□□□ -0.67
LIMCH1-215ENST00000512632 RCOR1Q9UKL0 485 aa10.86□□□□□ -0.67
LIMCH1-215ENST00000512632 PFKFB2O60825 505 aa10.86□□□□□ -0.67
LIMCH1-215ENST00000512632 CABLES1Q8TDN4 633 aa10.86□□□□□ -0.67
LIMCH1-215ENST00000512632 SDF4Q9BRK5 362 aa10.86□□□□□ -0.67
LIMCH1-215ENST00000512632 USP27XA6NNY8 438 aa10.85□□□□□ -0.67
LIMCH1-215ENST00000512632 PHKG2P15735 406 aa10.85□□□□□ -0.67
LIMCH1-215ENST00000512632 ZSCAN20P17040 1043 aaPredicted RBP10.85□□□□□ -0.67
LIMCH1-215ENST00000512632 HAND2P61296 217 aa10.85□□□□□ -0.67
LIMCH1-215ENST00000512632 CHRNA2Q15822 529 aa10.85□□□□□ -0.67
LIMCH1-215ENST00000512632 SMARCC2Q8TAQ2 1214 aa10.85□□□□□ -0.67
LIMCH1-215ENST00000512632 ERBB3P21860 1342 aa10.85□□□□□ -0.67
LIMCH1-215ENST00000512632 MARF1Q9Y4F3 1742 aaKnown RBP10.85□□□□□ -0.67
LIMCH1-215ENST00000512632 CCDC112Q8NEF3 446 aa10.85□□□□□ -0.67
LIMCH1-215ENST00000512632 NOL12Q9UGY1 213 aaKnown RBP eCLIP10.85□□□□□ -0.67
LIMCH1-215ENST00000512632 V9GYY5 206 aaPredicted RBP10.85□□□□□ -0.67
LIMCH1-215ENST00000512632 NCBP1Q09161 790 aaKnown RBP10.85□□□□□ -0.67
LIMCH1-215ENST00000512632 FMNL2Q96PY5 1086 aa10.85□□□□□ -0.67
LIMCH1-215ENST00000512632 PAG1Q9NWQ8 432 aa10.85□□□□□ -0.67
LIMCH1-215ENST00000512632 RGPD2P0DJD1 1756 aa10.85□□□□□ -0.67
LIMCH1-215ENST00000512632 A0A1B0GVL5 298 aa10.85□□□□□ -0.67
LIMCH1-215ENST00000512632 POLR3DP05423 398 aaPredicted RBP10.85□□□□□ -0.67
LIMCH1-215ENST00000512632 CCDC85AQ96PX6 553 aaPredicted RBP10.85□□□□□ -0.67
LIMCH1-215ENST00000512632 CRYBG1Q9Y4K1 1723 aa10.84□□□□□ -0.67
LIMCH1-215ENST00000512632 LTN1O94822 1766 aa10.84□□□□□ -0.67
LIMCH1-215ENST00000512632 E7EWF7 191 aa10.84□□□□□ -0.67
LIMCH1-215ENST00000512632 SKILP12757 684 aa10.84□□□□□ -0.67
LIMCH1-215ENST00000512632 FKBP4Q02790 459 aaKnown RBP eCLIP10.84□□□□□ -0.67
LIMCH1-215ENST00000512632 ARHGAP30Q7Z6I6 1101 aaPredicted RBP10.84□□□□□ -0.67
LIMCH1-215ENST00000512632 LRRC8AQ8IWT6 810 aa10.84□□□□□ -0.67
LIMCH1-215ENST00000512632 GJB4Q9NTQ9 266 aa10.84□□□□□ -0.67
LIMCH1-215ENST00000512632 N4BP2Q86UW6 1770 aaPredicted RBP10.84□□□□□ -0.67
LIMCH1-215ENST00000512632 NCAPD2Q15021 1401 aa10.84□□□□□ -0.67
LIMCH1-215ENST00000512632 CTIFO43310 598 aaKnown RBP10.84□□□□□ -0.67
LIMCH1-215ENST00000512632 STX1AQ16623 288 aa10.84□□□□□ -0.67
LIMCH1-215ENST00000512632 LRRC24Q50LG9 513 aa10.84□□□□□ -0.67
LIMCH1-215ENST00000512632 AOPEPQ8N6M6 819 aa10.84□□□□□ -0.67
LIMCH1-215ENST00000512632 ANKRD7Q92527 254 aa10.84□□□□□ -0.67
LIMCH1-215ENST00000512632 KDM3BQ7LBC6 1761 aa10.84□□□□□ -0.67
LIMCH1-215ENST00000512632 HSPD1P10809 573 aaKnown RBP10.84□□□□□ -0.67
LIMCH1-215ENST00000512632 SNW1Q13573 536 aaKnown RBP10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms