RNA–Protein interactions for RNA: ENST00000444458.5

CCDC88A-208, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 4,236 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-208ENST00000444458 CBLBQ13191 982 aa2.95□□□□□ -1.94
CCDC88A-208ENST00000444458 SNAP47Q5SQN1 464 aa2.95□□□□□ -1.94
CCDC88A-208ENST00000444458 DIEXFQ68CQ4 756 aaKnown RBP2.95□□□□□ -1.94
CCDC88A-208ENST00000444458 AMOTL1Q8IY63 956 aa2.95□□□□□ -1.94
CCDC88A-208ENST00000444458 SEPT12Q8IYM1 358 aa2.95□□□□□ -1.94
CCDC88A-208ENST00000444458 MYO1HQ8N1T3 1032 aa2.95□□□□□ -1.94
CCDC88A-208ENST00000444458 SAMD3Q8N6K7 520 aa2.95□□□□□ -1.94
CCDC88A-208ENST00000444458 UBR7Q8N806 425 aa2.95□□□□□ -1.94
CCDC88A-208ENST00000444458 EPS8L3Q8TE67 593 aaKnown RBP2.95□□□□□ -1.94
CCDC88A-208ENST00000444458 IFT43Q96FT9 208 aa2.95□□□□□ -1.94
CCDC88A-208ENST00000444458 ARPC5LQ9BPX5 153 aa2.95□□□□□ -1.94
CCDC88A-208ENST00000444458 CFHR5Q9BXR6 569 aa2.95□□□□□ -1.94
CCDC88A-208ENST00000444458 INTUQ9ULD6 942 aa2.95□□□□□ -1.94
CCDC88A-208ENST00000444458 THRAP3Q9Y2W1 955 aaKnown RBP2.95□□□□□ -1.94
CCDC88A-208ENST00000444458 PCDHB3Q9Y5E6 796 aa2.95□□□□□ -1.94
CCDC88A-208ENST00000444458 CCER2I3L3R5 266 aa2.95□□□□□ -1.94
CCDC88A-208ENST00000444458 BPNT1O95861 308 aa2.95□□□□□ -1.94
CCDC88A-208ENST00000444458 IGHA2P01877 340 aa2.95□□□□□ -1.94
CCDC88A-208ENST00000444458 CT47B1P0C2W7 299 aaPredicted RBP2.95□□□□□ -1.94
CCDC88A-208ENST00000444458 LIG1P18858 919 aa2.95□□□□□ -1.94
CCDC88A-208ENST00000444458 COL9A2Q14055 689 aaPredicted RBP2.95□□□□□ -1.94
CCDC88A-208ENST00000444458 SEPT6Q14141 434 aa2.95□□□□□ -1.94
CCDC88A-208ENST00000444458 C10orf62Q5T681 223 aaPredicted RBP2.95□□□□□ -1.94
CCDC88A-208ENST00000444458 NXPE4Q6UWF7 544 aa2.95□□□□□ -1.94
CCDC88A-208ENST00000444458 DDX42Q86XP3 938 aaKnown RBP eCLIP2.95□□□□□ -1.94
CCDC88A-208ENST00000444458 ZNF296Q8WUU4 475 aaPredicted RBP2.95□□□□□ -1.94
CCDC88A-208ENST00000444458 CCDC74AQ96AQ1 378 aa2.95□□□□□ -1.94
CCDC88A-208ENST00000444458 CCDC113Q9H0I3 377 aa2.95□□□□□ -1.94
CCDC88A-208ENST00000444458 UNC93B1Q9H1C4 597 aa2.95□□□□□ -1.94
CCDC88A-208ENST00000444458 PLA2G2EQ9NZK7 142 aa2.95□□□□□ -1.94
CCDC88A-208ENST00000444458 RABGEF1Q9UJ41 708 aa2.95□□□□□ -1.94
CCDC88A-208ENST00000444458 MAPK8IP1Q9UQF2 711 aa2.95□□□□□ -1.94
CCDC88A-208ENST00000444458 PLAAQ9Y263 795 aa2.95□□□□□ -1.94
CCDC88A-208ENST00000444458 KDM2BQ8NHM5 1336 aa2.95□□□□□ -1.94
CCDC88A-208ENST00000444458 GOLGA6CA6NDK9 693 aa2.95□□□□□ -1.94
CCDC88A-208ENST00000444458 GOLGA6BA6NDN3 693 aa2.95□□□□□ -1.94
CCDC88A-208ENST00000444458 RASGRP1O95267 797 aa2.95□□□□□ -1.94
CCDC88A-208ENST00000444458 GOLGA6DP0CG33 693 aa2.95□□□□□ -1.94
CCDC88A-208ENST00000444458 CDKN1CP49918 316 aaPredicted RBP2.95□□□□□ -1.94
CCDC88A-208ENST00000444458 FAM160A1Q05DH4 1040 aa2.95□□□□□ -1.94
CCDC88A-208ENST00000444458 TKFCQ3LXA3 575 aa2.95□□□□□ -1.94
CCDC88A-208ENST00000444458 SCUBE3Q8IX30 993 aa2.95□□□□□ -1.94
CCDC88A-208ENST00000444458 RAVER1Q8IY67 606 aaKnown RBP2.95□□□□□ -1.94
CCDC88A-208ENST00000444458 CHPFQ8IZ52 775 aa2.95□□□□□ -1.94
CCDC88A-208ENST00000444458 APBA2Q99767 749 aa2.95□□□□□ -1.94
CCDC88A-208ENST00000444458 MTA3Q9BTC8 594 aa2.95□□□□□ -1.94
CCDC88A-208ENST00000444458 OSBPL7Q9BZF2 842 aa2.95□□□□□ -1.94
CCDC88A-208ENST00000444458 SRCIN1Q9C0H9 1055 aa2.95□□□□□ -1.94
CCDC88A-208ENST00000444458 ATG3Q9NT62 314 aa2.95□□□□□ -1.94
CCDC88A-208ENST00000444458 GOLGA6AQ9NYA3 693 aa2.95□□□□□ -1.94
CCDC88A-208ENST00000444458 CDV3Q9UKY7 258 aaKnown RBP2.95□□□□□ -1.94
CCDC88A-208ENST00000444458 CD2APQ9Y5K6 639 aa2.95□□□□□ -1.94
CCDC88A-208ENST00000444458 TMEM229AB2RXF0 380 aa2.95□□□□□ -1.94
CCDC88A-208ENST00000444458 EIF6P56537 245 aaKnown RBP2.95□□□□□ -1.94
CCDC88A-208ENST00000444458 POU5F1BQ06416 359 aa2.95□□□□□ -1.94
CCDC88A-208ENST00000444458 SSRP1Q08945 709 aaKnown RBP2.95□□□□□ -1.94
CCDC88A-208ENST00000444458 C11orf91Q3C1V1 193 aa2.95□□□□□ -1.94
CCDC88A-208ENST00000444458 CLEC4GQ6UXB4 293 aa2.95□□□□□ -1.94
CCDC88A-208ENST00000444458 ERMP1Q7Z2K6 904 aa2.95□□□□□ -1.94
CCDC88A-208ENST00000444458 HDGFL2Q7Z4V5 671 aaPredicted RBP2.95□□□□□ -1.94
CCDC88A-208ENST00000444458 THAP3Q8WTV1 239 aaPredicted RBP2.95□□□□□ -1.94
CCDC88A-208ENST00000444458 NKD1Q969G9 470 aa2.95□□□□□ -1.94
CCDC88A-208ENST00000444458 LRCH3Q96II8 777 aa2.95□□□□□ -1.94
CCDC88A-208ENST00000444458 NBPF3Q9H094 633 aa2.95□□□□□ -1.94
CCDC88A-208ENST00000444458 AASDHPPTQ9NRN7 309 aa2.95□□□□□ -1.94
CCDC88A-208ENST00000444458 TMEM260Q9NX78 707 aa2.95□□□□□ -1.94
CCDC88A-208ENST00000444458 CNTN3Q9P232 1028 aa2.95□□□□□ -1.94
CCDC88A-208ENST00000444458 ADAMTS1Q9UHI8 967 aa2.95□□□□□ -1.94
CCDC88A-208ENST00000444458 HCN4Q9Y3Q4 1203 aa2.95□□□□□ -1.94
CCDC88A-208ENST00000444458 SUPT16HQ9Y5B9 1047 aaKnown RBP2.95□□□□□ -1.94
CCDC88A-208ENST00000444458 IRS4O14654 1257 aaPredicted RBP2.94□□□□□ -1.94
CCDC88A-208ENST00000444458 PHACTR2O75167 634 aa2.94□□□□□ -1.94
CCDC88A-208ENST00000444458 STAU1O95793 577 aaKnown RBP2.94□□□□□ -1.94
CCDC88A-208ENST00000444458 SCGB1D2O95969 90 aa2.94□□□□□ -1.94
CCDC88A-208ENST00000444458 CDC27P30260 824 aa2.94□□□□□ -1.94
CCDC88A-208ENST00000444458 IRS1P35568 1242 aa2.94□□□□□ -1.94
CCDC88A-208ENST00000444458 GUCY2FP51841 1108 aa2.94□□□□□ -1.94
CCDC88A-208ENST00000444458 RAPGEF1Q13905 1077 aa2.94□□□□□ -1.94
CCDC88A-208ENST00000444458 ESCO1Q5FWF5 840 aa2.94□□□□□ -1.94
CCDC88A-208ENST00000444458 SH3BP5LQ7L8J4 393 aa2.94□□□□□ -1.94
CCDC88A-208ENST00000444458 C14orf80Q86SX3 495 aa2.94□□□□□ -1.94
CCDC88A-208ENST00000444458 ARNT2Q9HBZ2 717 aa2.94□□□□□ -1.94
CCDC88A-208ENST00000444458 KLK14Q9P0G3 267 aa2.94□□□□□ -1.94
CCDC88A-208ENST00000444458 ANAPC4Q9UJX5 808 aa2.94□□□□□ -1.94
CCDC88A-208ENST00000444458 LRFN2Q9ULH4 789 aa2.94□□□□□ -1.94
CCDC88A-208ENST00000444458 FXNQ16595 210 aa2.94□□□□□ -1.94
CCDC88A-208ENST00000444458 KRT26Q7Z3Y9 468 aa2.94□□□□□ -1.94
CCDC88A-208ENST00000444458 EMID1Q96A84 441 aaPredicted RBP2.94□□□□□ -1.94
CCDC88A-208ENST00000444458 MTMR8Q96EF0 704 aa2.94□□□□□ -1.94
CCDC88A-208ENST00000444458 MFSD3Q96ES6 412 aa2.94□□□□□ -1.94
CCDC88A-208ENST00000444458 C2orf49Q9BVC5 232 aaPredicted RBP2.94□□□□□ -1.94
CCDC88A-208ENST00000444458 BCO2Q9BYV7 579 aa2.94□□□□□ -1.94
CCDC88A-208ENST00000444458 CAAP1Q9H8G2 361 aa2.94□□□□□ -1.94
CCDC88A-208ENST00000444458 SALL2Q9Y467 1007 aaPredicted RBP2.94□□□□□ -1.94
CCDC88A-208ENST00000444458 SHTN1A0MZ66 631 aa2.94□□□□□ -1.94
CCDC88A-208ENST00000444458 IFRD1O00458 451 aaPredicted RBP2.94□□□□□ -1.94
CCDC88A-208ENST00000444458 GSTT1P30711 240 aa2.94□□□□□ -1.94
CCDC88A-208ENST00000444458 SQSTM1Q13501 440 aa2.94□□□□□ -1.94
CCDC88A-208ENST00000444458 RASGRF1Q13972 1273 aa2.94□□□□□ -1.94
CCDC88A-208ENST00000444458 LRRC41Q15345 812 aa2.94□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms