RNA–Protein interactions for RNA: YMR171C

EAR1, Transcript of Specificity factor required for Rsp5p-dependent ubiquitination, yeastyeast

Gene EAR1, Length 1,653 nt, Biotype protein coding, Subcellular localisation Cellular bud, Cytoplasm .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
EAR1YMR171C DOM34P33309 386 aa5.34□□□□□ -1.55
EAR1YMR171C GDH3P39708 457 aa5.34□□□□□ -1.55
EAR1YMR171C HSV2P50079 448 aaPredicted RBP5.34□□□□□ -1.55
EAR1YMR171C ZDS1P50111 915 aaKnown RBP5.34□□□□□ -1.55
EAR1YMR171C MAL11P53048 616 aa5.34□□□□□ -1.55
EAR1YMR171C YNR029CP53729 429 aaKnown RBP5.34□□□□□ -1.55
EAR1YMR171C YNL050CP53952 270 aa5.34□□□□□ -1.55
EAR1YMR171C LCD1Q04377 747 aa5.34□□□□□ -1.55
EAR1YMR171C COG8Q04632 607 aa5.34□□□□□ -1.55
EAR1YMR171C POB3Q04636 552 aaKnown RBP5.34□□□□□ -1.55
EAR1YMR171C ATG13Q06628 738 aa5.34□□□□□ -1.55
EAR1YMR171C ADE6P38972 1358 aaKnown RBP5.34□□□□□ -1.55
EAR1YMR171C YIL177CP40434 1758 aa5.34□□□□□ -1.55
EAR1YMR171C YJL225CP40889 1758 aa5.34□□□□□ -1.55
EAR1YMR171C CYC7P00045 113 aa5.34□□□□□ -1.56
EAR1YMR171C TRP3P00937 484 aa5.34□□□□□ -1.56
EAR1YMR171C NPP2P39997 493 aa5.34□□□□□ -1.56
EAR1YMR171C TOK1P40310 691 aa5.34□□□□□ -1.56
EAR1YMR171C RRT14P40470 206 aa5.34□□□□□ -1.56
EAR1YMR171C DSD1P53095 428 aa5.34□□□□□ -1.56
EAR1YMR171C PRP43P53131 767 aaKnown RBP5.34□□□□□ -1.56
EAR1YMR171C SVS1Q12254 260 aa5.34□□□□□ -1.56
EAR1YMR171C URB1P34241 1764 aaKnown RBP5.33□□□□□ -1.56
EAR1YMR171C MSH2P25847 964 aa5.33□□□□□ -1.56
EAR1YMR171C GIC1P38785 314 aa5.33□□□□□ -1.56
EAR1YMR171C YNG2P38806 282 aaKnown RBP5.33□□□□□ -1.56
EAR1YMR171C SRT1Q03175 343 aa5.33□□□□□ -1.56
EAR1YMR171C NOT3P06102 836 aaKnown RBP5.32□□□□□ -1.56
EAR1YMR171C SPS1P08458 490 aa5.32□□□□□ -1.56
EAR1YMR171C ADP1P25371 1049 aa5.32□□□□□ -1.56
EAR1YMR171C TSL1P38427 1098 aaKnown RBP5.32□□□□□ -1.56
EAR1YMR171C HFM1P51979 1187 aa5.32□□□□□ -1.56
EAR1YMR171C SDH1Q00711 640 aa5.32□□□□□ -1.56
EAR1YMR171C MAP1Q01662 387 aaKnown RBP RIP-Chip data5.32□□□□□ -1.56not detected
EAR1YMR171C NKP2Q06162 153 aa5.32□□□□□ -1.56
EAR1YMR171C YKR073CP36153 106 aa5.31□□□□□ -1.56
EAR1YMR171C SPO1P53541 631 aa5.31□□□□□ -1.56
EAR1YMR171C NTG2Q08214 380 aa5.31□□□□□ -1.56
EAR1YMR171C FUN30P31380 1131 aa5.31□□□□□ -1.56
EAR1YMR171C REC104P33323 182 aa5.31□□□□□ -1.56
EAR1YMR171C YKR078WP36158 585 aaKnown RBP5.31□□□□□ -1.56
EAR1YMR171C ABZ1P37254 787 aaPredicted RBP5.31□□□□□ -1.56
EAR1YMR171C RFC1P38630 861 aaKnown RBP5.31□□□□□ -1.56
EAR1YMR171C SEC26P41810 973 aaKnown RBP5.31□□□□□ -1.56
EAR1YMR171C CCM1P48237 864 aaPredicted RBP5.31□□□□□ -1.56
EAR1YMR171C SFB2P53953 876 aa5.31□□□□□ -1.56
EAR1YMR171C NUP145P49687 1317 aa5.3□□□□□ -1.56
EAR1YMR171C RFC5P38251 354 aa5.3□□□□□ -1.56
EAR1YMR171C YER158CP40095 573 aa5.3□□□□□ -1.56
EAR1YMR171C ALG2P43636 503 aa5.3□□□□□ -1.56
EAR1YMR171C CSI1Q04368 295 aa5.3□□□□□ -1.56
EAR1YMR171C XYL2Q07993 356 aa5.3□□□□□ -1.56
EAR1YMR171C MED7Q08278 222 aa5.3□□□□□ -1.56
EAR1YMR171C LPX1Q12405 387 aaKnown RBP5.3□□□□□ -1.56
EAR1YMR171C DUR1,2P32528 1835 aaKnown RBP5.29□□□□□ -1.56
EAR1YMR171C RPS19AP07280 144 aaKnown RBP5.29□□□□□ -1.56
EAR1YMR171C RPS19BP07281 144 aaPredicted RBP5.29□□□□□ -1.56
EAR1YMR171C CDC48P25694 835 aaKnown RBP5.29□□□□□ -1.56
EAR1YMR171C TOS1P38288 455 aa5.29□□□□□ -1.56
EAR1YMR171C LSB3P43603 459 aaKnown RBP5.29□□□□□ -1.56
EAR1YMR171C YJR142WP47173 342 aa5.29□□□□□ -1.56
EAR1YMR171C UGO1Q03327 502 aa5.29□□□□□ -1.56
EAR1YMR171C OSW2Q12202 724 aa5.29□□□□□ -1.56
EAR1YMR171C ROM2P51862 1356 aaKnown RBP5.29□□□□□ -1.56
EAR1YMR171C PHR1P05066 565 aaKnown RBP RIP-Chip data5.28□□□□□ -1.56not detected
EAR1YMR171C RNR2P09938 399 aaKnown RBP5.28□□□□□ -1.56
EAR1YMR171C HSP104P31539 908 aaKnown RBP5.28□□□□□ -1.56
EAR1YMR171C YKE2P52553 114 aa5.28□□□□□ -1.56
EAR1YMR171C MTC5Q03897 1148 aa5.28□□□□□ -1.56
EAR1YMR171C UTP14Q04500 899 aaKnown RBP5.28□□□□□ -1.56
EAR1YMR171C BMS1Q08965 1183 aaKnown RBP5.28□□□□□ -1.56
EAR1YMR171C RIB2Q12362 591 aaKnown RBP5.28□□□□□ -1.56
EAR1YMR171C NOP14Q99207 810 aaKnown RBP5.28□□□□□ -1.56
EAR1YMR171C LYS2P07702 1392 aa5.28□□□□□ -1.56
EAR1YMR171C RAD53P22216 821 aa5.28□□□□□ -1.56
EAR1YMR171C MEF1P25039 761 aa5.28□□□□□ -1.56
EAR1YMR171C PEX6P33760 1030 aa5.28□□□□□ -1.56
EAR1YMR171C YBR238CP38330 731 aaKnown RBP5.28□□□□□ -1.56
EAR1YMR171C YAP1801P38856 637 aa5.28□□□□□ -1.56
EAR1YMR171C GYP8P43570 497 aa5.28□□□□□ -1.56
EAR1YMR171C CTF4Q01454 927 aa5.28□□□□□ -1.56
EAR1YMR171C YGR161W-CQ3E744 92 aa5.28□□□□□ -1.56
EAR1YMR171C MDM12Q92328 271 aa5.28□□□□□ -1.56
EAR1YMR171C APL1P27351 700 aa5.27□□□□□ -1.57
EAR1YMR171C PIL1P53252 339 aaKnown RBP5.27□□□□□ -1.57
EAR1YMR171C YGR283CP53336 341 aaPredicted RBP5.27□□□□□ -1.57
EAR1YMR171C DNM1P54861 757 aa5.27□□□□□ -1.57
EAR1YMR171C YPR196WQ06595 470 aa5.27□□□□□ -1.57
EAR1YMR171C ENV7Q12003 364 aa5.27□□□□□ -1.57
EAR1YMR171C SPC29P33419 253 aa5.26□□□□□ -1.57
EAR1YMR171C DSS1P39112 969 aa5.26□□□□□ -1.57
EAR1YMR171C ORC3P54790 616 aa5.26□□□□□ -1.57
EAR1YMR171C VAS1P07806 1104 aaKnown RBP5.25□□□□□ -1.57
EAR1YMR171C CDC16P09798 840 aa5.25□□□□□ -1.57
EAR1YMR171C KIN2P13186 1147 aaKnown RBP5.25□□□□□ -1.57
EAR1YMR171C HSP78P33416 811 aa5.25□□□□□ -1.57
EAR1YMR171C EMC3P36039 253 aa5.25□□□□□ -1.57
EAR1YMR171C ECM21P38167 1117 aaKnown RBP5.25□□□□□ -1.57
EAR1YMR171C BDH2P39713 417 aa5.25□□□□□ -1.57
EAR1YMR171C RSM25P40496 264 aa5.25□□□□□ -1.57
Retrieved 100 of 5,963 RNA–protein pairs in 63.9 ms