RNA–Protein interactions for RNA: YHR111W

UBA4, Transcript of E1-like protein that activates Urm1p before urmylation, yeastyeast

Gene UBA4, Length 1,323 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UBA4YHR111W LCD1Q04377 747 aa11.08□□□□□ -0.64
UBA4YHR111W MRI1Q06489 411 aaKnown RBP11.08□□□□□ -0.64
UBA4YHR111W SDH5Q08230 162 aa11.08□□□□□ -0.64
UBA4YHR111W AFT2Q08957 416 aa11.08□□□□□ -0.64
UBA4YHR111W DAP1Q12091 152 aa11.08□□□□□ -0.64
UBA4YHR111W SGT2Q12118 346 aaKnown RBP11.08□□□□□ -0.64
UBA4YHR111W REC8Q12188 680 aa11.08□□□□□ -0.64
UBA4YHR111W CHS2P14180 963 aa11.07□□□□□ -0.64
UBA4YHR111W PSO2P30620 661 aa11.07□□□□□ -0.64
UBA4YHR111W BCD1P38772 366 aa11.07□□□□□ -0.64
UBA4YHR111W UBP5P39944 805 aa11.07□□□□□ -0.64
UBA4YHR111W RLP24Q07915 199 aaKnown RBP11.07□□□□□ -0.64
UBA4YHR111W TRS33Q99394 268 aa11.07□□□□□ -0.64
UBA4YHR111W YHR054CP38780 354 aa11.06□□□□□ -0.64
UBA4YHR111W CCC2P38995 1004 aa11.06□□□□□ -0.64
UBA4YHR111W RSM25P40496 264 aa11.06□□□□□ -0.64
UBA4YHR111W YIR016WP40572 265 aa11.06□□□□□ -0.64
UBA4YHR111W YGR237CP50089 785 aa11.06□□□□□ -0.64
UBA4YHR111W SNU56Q03782 492 aaKnown RBP11.06□□□□□ -0.64
UBA4YHR111W CTF3Q12748 733 aa11.06□□□□□ -0.64
UBA4YHR111W PEX2P32800 271 aa11.05□□□□□ -0.64
UBA4YHR111W PTC4P38089 393 aa11.05□□□□□ -0.64
UBA4YHR111W SPC98P53540 846 aa11.05□□□□□ -0.64
UBA4YHR111W YML083CQ04526 418 aa11.05□□□□□ -0.64
UBA4YHR111W PIG1Q06216 648 aa11.05□□□□□ -0.64
UBA4YHR111W PLP2Q12017 286 aa11.05□□□□□ -0.64
UBA4YHR111W MNL2Q12205 849 aa11.05□□□□□ -0.64
UBA4YHR111W NAT1P12945 854 aaKnown RBP11.04□□□□□ -0.64
UBA4YHR111W HMT1P38074 348 aa11.04□□□□□ -0.64
UBA4YHR111W RVS167P39743 482 aaKnown RBP11.04□□□□□ -0.64
UBA4YHR111W FTR1P40088 404 aa11.04□□□□□ -0.64
UBA4YHR111W DAS1P47005 663 aa11.04□□□□□ -0.64
UBA4YHR111W NUT1P53114 1132 aa11.04□□□□□ -0.64
UBA4YHR111W STP1Q00947 519 aa11.04□□□□□ -0.64
UBA4YHR111W CDD1Q06549 142 aa11.04□□□□□ -0.64
UBA4YHR111W MAF1P41910 395 aa11.03□□□□□ -0.64
UBA4YHR111W AIP1P46680 615 aaKnown RBP11.03□□□□□ -0.64
UBA4YHR111W GIR2Q03768 265 aaPredicted RBP11.03□□□□□ -0.64
UBA4YHR111W YLR257WQ06146 321 aaKnown RBP11.03□□□□□ -0.64
UBA4YHR111W ATP1P07251 545 aaKnown RBP11.02□□□□□ -0.65
UBA4YHR111W VPS3P23643 1011 aa11.02□□□□□ -0.65
UBA4YHR111W GSY2P27472 705 aa11.02□□□□□ -0.65
UBA4YHR111W RDH54P38086 958 aa11.02□□□□□ -0.65
UBA4YHR111W NPR3P38742 1146 aa11.02□□□□□ -0.65
UBA4YHR111W RRM3P38766 723 aa11.02□□□□□ -0.65
UBA4YHR111W SIP5P40210 489 aaKnown RBP11.02□□□□□ -0.65
UBA4YHR111W MGA2P40578 1113 aa11.02□□□□□ -0.65
UBA4YHR111W TBF1Q02457 562 aa11.02□□□□□ -0.65
UBA4YHR111W COG4Q06096 861 aa11.02□□□□□ -0.65
UBA4YHR111W SLX4Q12098 748 aa11.02□□□□□ -0.65
UBA4YHR111W FAL1Q12099 399 aaKnown RBP11.02□□□□□ -0.65
UBA4YHR111W GAL80P04387 435 aa11.01□□□□□ -0.65
UBA4YHR111W IME1P21190 360 aa11.01□□□□□ -0.65
UBA4YHR111W RAD27P26793 382 aa11.01□□□□□ -0.65
UBA4YHR111W MSP1P28737 362 aa11.01□□□□□ -0.65
UBA4YHR111W VPH1P32563 840 aaKnown RBP11.01□□□□□ -0.65
UBA4YHR111W SWI3P32591 825 aa11.01□□□□□ -0.65
UBA4YHR111W PCM1P38628 557 aaKnown RBP11.01□□□□□ -0.65
UBA4YHR111W FYV8P46949 817 aaKnown RBP11.01□□□□□ -0.65
UBA4YHR111W POL31P46957 487 aa11.01□□□□□ -0.65
UBA4YHR111W NOP13P53883 403 aaKnown RBP RIP-Chip data11.01□□□□□ -0.65not detected
UBA4YHR111W PEX1P24004 1043 aa11□□□□□ -0.65
UBA4YHR111W COQ8P27697 501 aa11□□□□□ -0.65
UBA4YHR111W ADE17P38009 592 aaKnown RBP11□□□□□ -0.65
UBA4YHR111W TBS1P38114 1094 aa11□□□□□ -0.65
UBA4YHR111W KRE33P53914 1056 aaKnown RBP11□□□□□ -0.65
UBA4YHR111W EBS1Q03466 884 aaKnown RBP11□□□□□ -0.65
UBA4YHR111W CEF1Q03654 590 aaPredicted RBP11□□□□□ -0.65
UBA4YHR111W TIF35Q04067 274 aaKnown RBP11□□□□□ -0.65
UBA4YHR111W YAP7Q08182 245 aa11□□□□□ -0.65
UBA4YHR111W GIS3Q12418 502 aa11□□□□□ -0.65
UBA4YHR111W LAA1P39526 2014 aa11□□□□□ -0.65
UBA4YHR111W CDC37P06101 506 aaKnown RBP10.99□□□□□ -0.65
UBA4YHR111W SNF1P06782 633 aaKnown RBP10.99□□□□□ -0.65
UBA4YHR111W MAS1P10507 462 aa10.99□□□□□ -0.65
UBA4YHR111W KGD2P19262 463 aaPredicted RBP10.99□□□□□ -0.65
UBA4YHR111W MRC1P25588 1096 aa10.99□□□□□ -0.65
UBA4YHR111W YBR284WP38150 797 aa10.99□□□□□ -0.65
UBA4YHR111W FIG4P42837 879 aa10.99□□□□□ -0.65
UBA4YHR111W SMC3P47037 1230 aa10.99□□□□□ -0.65
UBA4YHR111W YJL045WP47052 634 aa10.99□□□□□ -0.65
UBA4YHR111W YNR014WP53719 212 aa10.99□□□□□ -0.65
UBA4YHR111W RPA49Q01080 415 aaPredicted RBP10.99□□□□□ -0.65
UBA4YHR111W GFD1Q04839 188 aaKnown RBP10.99□□□□□ -0.65
UBA4YHR111W HCR1Q05775 265 aaKnown RBP10.99□□□□□ -0.65
UBA4YHR111W RGA2Q06407 1009 aa10.99□□□□□ -0.65
UBA4YHR111W IWR1Q07532 353 aaPredicted RBP10.99□□□□□ -0.65
UBA4YHR111W PGS1P25578 521 aa10.98□□□□□ -0.65
UBA4YHR111W RPN12P32496 274 aa10.98□□□□□ -0.65
UBA4YHR111W SAF1P38352 637 aa10.98□□□□□ -0.65
UBA4YHR111W CTM1P38818 585 aa10.98□□□□□ -0.65
UBA4YHR111W COS5P47187 383 aa10.98□□□□□ -0.65
UBA4YHR111W ALT1P52893 592 aa10.98□□□□□ -0.65
UBA4YHR111W MAP1Q01662 387 aaKnown RBP RIP-Chip data10.98□□□□□ -0.65not detected
UBA4YHR111W ADA2Q02336 434 aa10.98□□□□□ -0.65
UBA4YHR111W SLA2P33338 968 aa10.97□□□□□ -0.65
UBA4YHR111W AGP2P38090 596 aa10.97□□□□□ -0.65
UBA4YHR111W KAP123P40069 1113 aaKnown RBP10.97□□□□□ -0.65
UBA4YHR111W MOB1P40484 314 aa10.97□□□□□ -0.65
UBA4YHR111W ABP140Q08641 628 aaKnown RBP10.97□□□□□ -0.65
Retrieved 100 of 5,963 RNA–protein pairs in 18.2 ms