RNA–Protein interactions for RNA: YGL098W

USE1, Transcript of Essential SNARE protein localized to the ER, yeastyeast

Gene USE1, Length 738 nt, Biotype protein coding, Subcellular localisation Cell cortex, Cytosol, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
USE1YGL098W VMA4P22203 233 aaKnown RBP3.46□□□□□ -1.86
USE1YGL098W DPB2P24482 689 aaPredicted RBP3.46□□□□□ -1.86
USE1YGL098W BUD23P25627 275 aaPredicted RBP3.46□□□□□ -1.86
USE1YGL098W RME1P32338 300 aaKnown RBP3.46□□□□□ -1.86
USE1YGL098W NIP1P32497 812 aaKnown RBP3.46□□□□□ -1.86
USE1YGL098W GCD7P32502 381 aaPredicted RBP3.46□□□□□ -1.86
USE1YGL098W GRX4P32642 244 aa3.46□□□□□ -1.86
USE1YGL098W ATO2P32907 282 aa3.46□□□□□ -1.86
USE1YGL098W UBC6P33296 250 aaPredicted RBP3.46□□□□□ -1.86
USE1YGL098W NIP100P33420 868 aa3.46□□□□□ -1.86
USE1YGL098W ADE17P38009 592 aaKnown RBP3.46□□□□□ -1.86
USE1YGL098W UBP13P38187 747 aa3.46□□□□□ -1.86
USE1YGL098W YHR020WP38708 688 aaKnown RBP3.46□□□□□ -1.86
USE1YGL098W YAP3P38749 330 aa3.46□□□□□ -1.86
USE1YGL098W PCF11P39081 626 aaPredicted RBP3.46□□□□□ -1.86
USE1YGL098W SWD1P39706 426 aa3.46□□□□□ -1.86
USE1YGL098W FCY21P40039 528 aa3.46□□□□□ -1.86
USE1YGL098W RPT2P40327 437 aaKnown RBP3.46□□□□□ -1.86
USE1YGL098W YTA6P40328 754 aa3.46□□□□□ -1.86
USE1YGL098W ATG3P40344 310 aa3.46□□□□□ -1.86
USE1YGL098W BUD6P41697 788 aa3.46□□□□□ -1.86
USE1YGL098W UBP6P43593 499 aaKnown RBP3.46□□□□□ -1.86
USE1YGL098W IOC3P43596 787 aa3.46□□□□□ -1.86
USE1YGL098W ALB1P47019 175 aaPredicted RBP3.46□□□□□ -1.86
USE1YGL098W ZDS1P50111 915 aaKnown RBP3.46□□□□□ -1.86
USE1YGL098W YGR266WP53326 701 aa3.46□□□□□ -1.86
USE1YGL098W SWP1Q02795 286 aa3.46□□□□□ -1.86
USE1YGL098W ISU1Q03020 165 aa3.46□□□□□ -1.86
USE1YGL098W SRL4Q03085 281 aa3.46□□□□□ -1.86
USE1YGL098W SRT1Q03175 343 aa3.46□□□□□ -1.86
USE1YGL098W RSM28Q03430 361 aa3.46□□□□□ -1.86
USE1YGL098W FIN1Q03898 291 aa3.46□□□□□ -1.86
USE1YGL098W YLR287CQ05881 355 aa3.46□□□□□ -1.86
USE1YGL098W SSQ1Q05931 657 aaPredicted RBP3.46□□□□□ -1.86
USE1YGL098W SEC10Q06245 871 aa3.46□□□□□ -1.86
USE1YGL098W SYO1Q07395 620 aa3.46□□□□□ -1.86
USE1YGL098W BRE1Q07457 700 aaKnown RBP3.46□□□□□ -1.86
USE1YGL098W ATG20Q07528 640 aa3.46□□□□□ -1.86
USE1YGL098W FRA1Q07825 749 aa3.46□□□□□ -1.86
USE1YGL098W RIX7Q07844 837 aaKnown RBP3.46□□□□□ -1.86
USE1YGL098W TMA16Q08687 178 aa3.46□□□□□ -1.86
USE1YGL098W RIM20Q12033 661 aa3.46□□□□□ -1.86
USE1YGL098W HMI1Q12039 706 aa3.46□□□□□ -1.86
USE1YGL098W BUG1Q12191 341 aa3.46□□□□□ -1.86
USE1YGL098W RIO1Q12196 484 aaKnown RBP3.46□□□□□ -1.86
USE1YGL098W RUP1Q12242 671 aa3.46□□□□□ -1.86
USE1YGL098W SPO21Q12411 609 aa3.46□□□□□ -1.86
USE1YGL098W RMP1Q12530 201 aa3.46□□□□□ -1.86
USE1YGL098W GPM1P00950 247 aaKnown RBP3.45□□□□□ -1.86
USE1YGL098W CDC31P06704 161 aaKnown RBP3.45□□□□□ -1.86
USE1YGL098W MTF2P10849 440 aa3.45□□□□□ -1.86
USE1YGL098W PGI1P12709 554 aaKnown RBP3.45□□□□□ -1.86
USE1YGL098W SNA3P14359 133 aa3.45□□□□□ -1.86
USE1YGL098W SSA4P22202 642 aaKnown RBP3.45□□□□□ -1.86
USE1YGL098W PAP1P29468 568 aaKnown RBP3.45□□□□□ -1.86
USE1YGL098W SMI1P32566 505 aa3.45□□□□□ -1.86
USE1YGL098W PEP7P32609 515 aa3.45□□□□□ -1.86
USE1YGL098W BUD2P33314 1104 aa3.45□□□□□ -1.86
USE1YGL098W SLA2P33338 968 aa3.45□□□□□ -1.86
USE1YGL098W UTP11P34247 250 aaPredicted RBP3.45□□□□□ -1.86
USE1YGL098W PEX5P35056 612 aa3.45□□□□□ -1.86
USE1YGL098W OAF3P36023 863 aa3.45□□□□□ -1.86
USE1YGL098W LAS1P36146 502 aaPredicted RBP3.45□□□□□ -1.86
USE1YGL098W AAP1P37898 856 aaKnown RBP3.45□□□□□ -1.86
USE1YGL098W PSY4P38193 441 aa3.45□□□□□ -1.86
USE1YGL098W TDA3P38758 523 aa3.45□□□□□ -1.86
USE1YGL098W CCC2P38995 1004 aa3.45□□□□□ -1.86
USE1YGL098W PIK1P39104 1066 aa3.45□□□□□ -1.86
USE1YGL098W SIP5P40210 489 aaKnown RBP3.45□□□□□ -1.86
USE1YGL098W PDS1P40316 373 aaPredicted RBP3.45□□□□□ -1.86
USE1YGL098W RPL34BP40525 121 aaKnown RBP3.45□□□□□ -1.86
USE1YGL098W YKE2P52553 114 aa3.45□□□□□ -1.86
USE1YGL098W TEL2P53038 688 aa3.45□□□□□ -1.86
USE1YGL098W KAP114P53067 1004 aa3.45□□□□□ -1.86
USE1YGL098W COS6P53344 381 aa3.45□□□□□ -1.86
USE1YGL098W TMA20P89886 181 aaPredicted RBP3.45□□□□□ -1.86
USE1YGL098W ULP1Q02724 621 aa3.45□□□□□ -1.86
USE1YGL098W MUB1Q03162 620 aa3.45□□□□□ -1.86
USE1YGL098W DML1Q03652 475 aa3.45□□□□□ -1.86
USE1YGL098W SPO71Q03868 1245 aa3.45□□□□□ -1.86
USE1YGL098W RSM24Q03976 319 aa3.45□□□□□ -1.86
USE1YGL098W NNT1Q05874 261 aa3.45□□□□□ -1.86
USE1YGL098W OPY2Q06810 360 aa3.45□□□□□ -1.86
USE1YGL098W VHS3Q08438 674 aa3.45□□□□□ -1.86
USE1YGL098W RKM1Q08961 583 aaPredicted RBP3.45□□□□□ -1.86
USE1YGL098W YLR125WQ12138 136 aa3.45□□□□□ -1.86
USE1YGL098W ATP16Q12165 160 aa3.45□□□□□ -1.86
USE1YGL098W TAF3Q12297 353 aa3.45□□□□□ -1.86
USE1YGL098W NCB2Q92317 146 aa3.45□□□□□ -1.86
USE1YGL098W DOP1Q03921 1698 aa3.45□□□□□ -1.86
USE1YGL098W POM152P39685 1337 aa3.44□□□□□ -1.86
USE1YGL098W TY2B-LR1P0C2J3 1770 aa3.44□□□□□ -1.86
USE1YGL098W TY2B-FP0CX63 1770 aa3.44□□□□□ -1.86
USE1YGL098W TY2B-GR2P0CX64 1770 aa3.44□□□□□ -1.86
USE1YGL098W TY2B-CP25384 1770 aa3.44□□□□□ -1.86
USE1YGL098W TY2B-DR2Q03494 1770 aa3.44□□□□□ -1.86
USE1YGL098W TY1B-DR1Q03855 1755 aa3.44□□□□□ -1.86
USE1YGL098W TY2B-DR3Q07791 1770 aaKnown RBP3.44□□□□□ -1.86
USE1YGL098W TY2B-OR1Q12113 1770 aa3.44□□□□□ -1.86
USE1YGL098W TY2B-DR1Q12472 1770 aa3.44□□□□□ -1.86
Retrieved 100 of 5,963 RNA–protein pairs in 12.6 ms