RNA–Protein interactions for RNA: YFR004W

RPN11, Transcript of Metalloprotease subunit of 19S regulatory particle, yeast

Gene RPN11, Length 921 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RPN11	YFR004W	SHM1	P37292	490 aa	Predicted RBP	6.59	□□□□□ -1.35
RPN11	YFR004W	HMF1	P40037	129 aa	Known RBP	6.59	□□□□□ -1.35
RPN11	YFR004W	TY1A-JR2	P47099	440 aa		6.59	□□□□□ -1.35
RPN11	YFR004W	NNF1	P47149	201 aa		6.59	□□□□□ -1.35
RPN11	YFR004W	YGR237C	P50089	785 aa		6.59	□□□□□ -1.35
RPN11	YFR004W	YGL138C	P53122	345 aa		6.59	□□□□□ -1.35
RPN11	YFR004W	TUB4	P53378	473 aa		6.59	□□□□□ -1.35
RPN11	YFR004W	OYE2	Q03558	400 aa	Known RBP	6.59	□□□□□ -1.35
RPN11	YFR004W	TY1A-DR1	Q03856	440 aa		6.59	□□□□□ -1.35
RPN11	YFR004W	TY1A-ML1	Q04706	440 aa	Known RBP	6.59	□□□□□ -1.35
RPN11	YFR004W	UTP13	Q05946	817 aa	Known RBP	6.59	□□□□□ -1.35
RPN11	YFR004W	TLG2	Q08144	397 aa		6.59	□□□□□ -1.35
RPN11	YFR004W	TIP41	Q12199	356 aa		6.59	□□□□□ -1.35
RPN11	YFR004W	TY1A-BR	Q12217	440 aa		6.59	□□□□□ -1.35
RPN11	YFR004W	YDL206W	Q12424	762 aa		6.59	□□□□□ -1.35
RPN11	YFR004W	CEX1	Q12453	761 aa		6.59	□□□□□ -1.35
RPN11	YFR004W	TY1A-NL2	Q12470	440 aa		6.59	□□□□□ -1.35
RPN11	YFR004W	TY1A-GR2	Q12485	440 aa		6.59	□□□□□ -1.35
RPN11	YFR004W	FRT1	Q99332	602 aa		6.59	□□□□□ -1.35
RPN11	YFR004W	RPS6A	P0CX37	236 aa	Known RBP	6.58	□□□□□ -1.36
RPN11	YFR004W	RPS6B	P0CX38	236 aa	Predicted RBP	6.58	□□□□□ -1.36
RPN11	YFR004W	ALG1	P16661	449 aa		6.58	□□□□□ -1.36
RPN11	YFR004W	TEC1	P18412	486 aa		6.58	□□□□□ -1.36
RPN11	YFR004W	UBC1	P21734	215 aa	Known RBP	6.58	□□□□□ -1.36
RPN11	YFR004W	MRC1	P25588	1096 aa		6.58	□□□□□ -1.36
RPN11	YFR004W	GUT2	P32191	649 aa		6.58	□□□□□ -1.36
RPN11	YFR004W	MSS51	P32335	436 aa		6.58	□□□□□ -1.36
RPN11	YFR004W	SAP190	P36123	1033 aa		6.58	□□□□□ -1.36
RPN11	YFR004W	TVP38	P36164	337 aa		6.58	□□□□□ -1.36
RPN11	YFR004W	SLX1	P38324	304 aa		6.58	□□□□□ -1.36
RPN11	YFR004W	SEC9	P40357	651 aa		6.58	□□□□□ -1.36
RPN11	YFR004W	ACF4	P47129	309 aa		6.58	□□□□□ -1.36
RPN11	YFR004W	RPA14	P50106	137 aa		6.58	□□□□□ -1.36
RPN11	YFR004W	CAF130	P53280	1122 aa	Predicted RBP	6.58	□□□□□ -1.36
RPN11	YFR004W	TBF1	Q02457	562 aa		6.58	□□□□□ -1.36
RPN11	YFR004W	STE20	Q03497	939 aa	Known RBP	6.58	□□□□□ -1.36
RPN11	YFR004W	SPO71	Q03868	1245 aa		6.58	□□□□□ -1.36
RPN11	YFR004W	TRS120	Q04183	1289 aa		6.58	□□□□□ -1.36
RPN11	YFR004W	MAG2	Q06436	670 aa	Known RBP	6.58	□□□□□ -1.36
RPN11	YFR004W	VIP1	Q06685	1146 aa	Known RBP	6.58	□□□□□ -1.36
RPN11	YFR004W	YPL216W	Q08964	1102 aa		6.58	□□□□□ -1.36
RPN11	YFR004W	ATG9	Q12142	997 aa		6.58	□□□□□ -1.36
RPN11	YFR004W	YLR422W	Q06409	1932 aa		6.57	□□□□□ -1.36
RPN11	YFR004W	RPL8A	P17076	256 aa	Known RBP	6.57	□□□□□ -1.36
RPN11	YFR004W	MET4	P32389	672 aa		6.57	□□□□□ -1.36
RPN11	YFR004W	HIR1	P32479	840 aa		6.57	□□□□□ -1.36
RPN11	YFR004W	STO1	P34160	861 aa	Known RBP	6.57	□□□□□ -1.36
RPN11	YFR004W	RPC25	P35718	212 aa		6.57	□□□□□ -1.36
RPN11	YFR004W	SOH1	P38633	127 aa		6.57	□□□□□ -1.36
RPN11	YFR004W	PAN5	P38787	379 aa		6.57	□□□□□ -1.36
RPN11	YFR004W	CTM1	P38818	585 aa		6.57	□□□□□ -1.36
RPN11	YFR004W	CAJ1	P39101	391 aa		6.57	□□□□□ -1.36
RPN11	YFR004W	ATG3	P40344	310 aa		6.57	□□□□□ -1.36
RPN11	YFR004W	HUL4	P40985	892 aa		6.57	□□□□□ -1.36
RPN11	YFR004W	FYV8	P46949	817 aa	Known RBP	6.57	□□□□□ -1.36
RPN11	YFR004W	UBA2	P52488	636 aa		6.57	□□□□□ -1.36
RPN11	YFR004W	RTC4	P53850	401 aa		6.57	□□□□□ -1.36
RPN11	YFR004W	PNG1	Q02890	363 aa		6.57	□□□□□ -1.36
RPN11	YFR004W	EBS1	Q03466	884 aa	Known RBP	6.57	□□□□□ -1.36
RPN11	YFR004W	RRB1	Q04225	511 aa	Known RBP	6.57	□□□□□ -1.36
RPN11	YFR004W	VPS38	Q05919	439 aa		6.57	□□□□□ -1.36
RPN11	YFR004W	SPP382	Q06411	708 aa	Predicted RBP	6.57	□□□□□ -1.36
RPN11	YFR004W	YPR097W	Q06839	1073 aa		6.57	□□□□□ -1.36
RPN11	YFR004W	YOL075C	Q08234	1294 aa		6.57	□□□□□ -1.36
RPN11	YFR004W	DSE3	Q08729	430 aa		6.57	□□□□□ -1.36
RPN11	YFR004W	PET111	P08468	800 aa		6.56	□□□□□ -1.36
RPN11	YFR004W	THR4	P16120	514 aa	Known RBP	6.56	□□□□□ -1.36
RPN11	YFR004W	PWP2	P25635	923 aa	Known RBP	6.56	□□□□□ -1.36
RPN11	YFR004W	SUV3	P32580	737 aa		6.56	□□□□□ -1.36
RPN11	YFR004W	SPC42	P36094	363 aa		6.56	□□□□□ -1.36
RPN11	YFR004W	PXL1	P36166	706 aa		6.56	□□□□□ -1.36
RPN11	YFR004W	STT3	P39007	718 aa	Known RBP	6.56	□□□□□ -1.36
RPN11	YFR004W	PSP2	P50109	593 aa	Known RBP	6.56	□□□□□ -1.36
RPN11	YFR004W	MDR1	P53258	950 aa		6.56	□□□□□ -1.36
RPN11	YFR004W	SDA1	P53313	767 aa	Known RBP	6.56	□□□□□ -1.36
RPN11	YFR004W	PUN1	Q06991	263 aa		6.56	□□□□□ -1.36
RPN11	YFR004W	WHI4	Q07655	649 aa	Known RBP	6.56	□□□□□ -1.36
RPN11	YFR004W	RRP6	Q12149	733 aa	Known RBP	6.56	□□□□□ -1.36
RPN11	YFR004W	FMP27	Q06179	2628 aa		6.55	□□□□□ -1.36
RPN11	YFR004W	PRC1	P00729	532 aa		6.55	□□□□□ -1.36
RPN11	YFR004W	APN2	P38207	520 aa		6.55	□□□□□ -1.36
RPN11	YFR004W	REI1	P38344	393 aa	Predicted RBP	6.55	□□□□□ -1.36
RPN11	YFR004W	MIP6	P38760	659 aa	Known RBP	6.55	□□□□□ -1.36
RPN11	YFR004W	BCD1	P38772	366 aa		6.55	□□□□□ -1.36
RPN11	YFR004W	BUD16	P39988	312 aa		6.55	□□□□□ -1.36
RPN11	YFR004W	YEL025C	P39991	1188 aa		6.55	□□□□□ -1.36
RPN11	YFR004W	QDR1	P40475	563 aa		6.55	□□□□□ -1.36
RPN11	YFR004W	FAF1	P40546	346 aa	Predicted RBP	6.55	□□□□□ -1.36
RPN11	YFR004W	DAK2	P43550	591 aa		6.55	□□□□□ -1.36
RPN11	YFR004W	AIP1	P46680	615 aa	Known RBP	6.55	□□□□□ -1.36
RPN11	YFR004W	YJL045W	P47052	634 aa		6.55	□□□□□ -1.36
RPN11	YFR004W	YGR153W	P48238	217 aa		6.55	□□□□□ -1.36
RPN11	YFR004W	DSE4	P53753	1117 aa		6.55	□□□□□ -1.36
RPN11	YFR004W	YLR455W	Q06188	304 aa		6.55	□□□□□ -1.36
RPN11	YFR004W	GPI13	Q07830	1017 aa		6.55	□□□□□ -1.36
RPN11	YFR004W	TSC13	Q99190	310 aa		6.55	□□□□□ -1.36
RPN11	YFR004W	MTF2	P10849	440 aa		6.54	□□□□□ -1.36
RPN11	YFR004W	PPZ1	P26570	692 aa		6.54	□□□□□ -1.36
RPN11	YFR004W	SAS3	P34218	831 aa		6.54	□□□□□ -1.36
RPN11	YFR004W	PET10	P36139	283 aa		6.54	□□□□□ -1.36

Retrieved 100 of 5,963 RNA–protein pairs in 48.7 ms