RNA–Protein interactions for RNA: ENST00000636238.1

CIITA-214, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 498 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-214ENST00000636238 FMR1Q06787 632 aaKnown RBP eCLIP9.69□□□□□ -0.86
CIITA-214ENST00000636238 PKN2Q16513 984 aaKnown RBP9.69□□□□□ -0.86
CIITA-214ENST00000636238 AOC3Q16853 763 aa9.69□□□□□ -0.86
CIITA-214ENST00000636238 HSP90AB3PQ58FF7 597 aa9.69□□□□□ -0.86
CIITA-214ENST00000636238 SUSD4Q5VX71 490 aa9.69□□□□□ -0.86
CIITA-214ENST00000636238 RGMBQ6NW40 437 aa9.69□□□□□ -0.86
CIITA-214ENST00000636238 UBN2Q6ZU65 1347 aa9.69□□□□□ -0.86
CIITA-214ENST00000636238 MCM10Q7L590 875 aa9.69□□□□□ -0.86
CIITA-214ENST00000636238 MPNDQ8N594 471 aa9.69□□□□□ -0.86
CIITA-214ENST00000636238 C2orf69Q8N8R5 385 aa9.69□□□□□ -0.86
CIITA-214ENST00000636238 NECTIN2Q92692 538 aa9.69□□□□□ -0.86
CIITA-214ENST00000636238 CFAP44Q96MT7 982 aa9.69□□□□□ -0.86
CIITA-214ENST00000636238 UTP14AQ9BVJ6 771 aaKnown RBP9.69□□□□□ -0.86
CIITA-214ENST00000636238 U2AF1L5P0DN76 240 aaPredicted RBP9.68□□□□□ -0.86
CIITA-214ENST00000636238 EIF4A1P60842 406 aaKnown RBP9.68□□□□□ -0.86
CIITA-214ENST00000636238 FKBP1BP68106 108 aa9.68□□□□□ -0.86
CIITA-214ENST00000636238 U2AF1Q01081 240 aaKnown RBP eCLIP9.68□□□□□ -0.86
CIITA-214ENST00000636238 NOM1Q5C9Z4 860 aaKnown RBP9.68□□□□□ -0.86
CIITA-214ENST00000636238 GCC1Q96CN9 775 aa9.68□□□□□ -0.86
CIITA-214ENST00000636238 BABAM1Q9NWV8 329 aa9.68□□□□□ -0.86
CIITA-214ENST00000636238 CNOT7Q9UIV1 285 aaKnown RBP9.68□□□□□ -0.86
CIITA-214ENST00000636238 TSKSQ9UJT2 592 aa9.68□□□□□ -0.86
CIITA-214ENST00000636238 ABCC4O15439 1325 aa9.67□□□□□ -0.86
CIITA-214ENST00000636238 FAM155AB1AL88 458 aaPredicted RBP9.67□□□□□ -0.86
CIITA-214ENST00000636238 HIRAP54198 1017 aaPredicted RBP9.67□□□□□ -0.86
CIITA-214ENST00000636238 DDX46Q7L014 1031 aaKnown RBP9.67□□□□□ -0.86
CIITA-214ENST00000636238 CTU1Q7Z7A3 348 aaKnown RBP9.67□□□□□ -0.86
CIITA-214ENST00000636238 GBA2Q9HCG7 927 aaPredicted RBP9.67□□□□□ -0.86
CIITA-214ENST00000636238 ZNF609O15014 1411 aa9.66□□□□□ -0.86
CIITA-214ENST00000636238 CENPBP07199 599 aaPredicted RBP9.66□□□□□ -0.86
CIITA-214ENST00000636238 GPTP24298 496 aa9.66□□□□□ -0.86
CIITA-214ENST00000636238 GRAPQ13588 217 aa9.66□□□□□ -0.86
CIITA-214ENST00000636238 TTLL7Q6ZT98 887 aa9.66□□□□□ -0.86
CIITA-214ENST00000636238 KRT26Q7Z3Y9 468 aa9.66□□□□□ -0.86
CIITA-214ENST00000636238 MICALL2Q8IY33 904 aa9.66□□□□□ -0.86
CIITA-214ENST00000636238 GRAPLQ8TC17 118 aaPredicted RBP9.66□□□□□ -0.86
CIITA-214ENST00000636238 TRPM4Q8TD43 1214 aa9.66□□□□□ -0.86
CIITA-214ENST00000636238 DCPSQ96C86 337 aaKnown RBP9.66□□□□□ -0.86
CIITA-214ENST00000636238 PNNQ9H307 717 aaKnown RBP9.66□□□□□ -0.86
CIITA-214ENST00000636238 TRPM7Q96QT4 1865 aa9.66□□□□□ -0.86
CIITA-214ENST00000636238 SLC10A3P09131 477 aa9.65□□□□□ -0.86
CIITA-214ENST00000636238 HNRNPUQ00839 825 aaKnown RBP eCLIP9.65□□□□□ -0.86
CIITA-214ENST00000636238 KIF23Q02241 960 aaPredicted RBP9.65□□□□□ -0.86
CIITA-214ENST00000636238 USP48Q86UV5 1035 aa9.65□□□□□ -0.86
CIITA-214ENST00000636238 ZBTB3Q9H5J0 574 aa9.65□□□□□ -0.86
CIITA-214ENST00000636238 ZNF408Q9H9D4 720 aa9.65□□□□□ -0.86
CIITA-214ENST00000636238 RNF186Q9NXI6 227 aa9.65□□□□□ -0.86
CIITA-214ENST00000636238 RRP7AQ9Y3A4 280 aaKnown RBP9.65□□□□□ -0.86
CIITA-214ENST00000636238 RAD17O75943 681 aa9.64□□□□□ -0.87
CIITA-214ENST00000636238 ZNF157P51786 506 aaPredicted RBP9.64□□□□□ -0.87
CIITA-214ENST00000636238 C3orf67Q6ZVT6 689 aa9.64□□□□□ -0.87
CIITA-214ENST00000636238 SULF1Q8IWU6 871 aa9.64□□□□□ -0.87
CIITA-214ENST00000636238 EYA3Q99504 573 aa9.64□□□□□ -0.87
CIITA-214ENST00000636238 LAMB4A4D0S4 1761 aa9.64□□□□□ -0.87
CIITA-214ENST00000636238 CACNA1SQ13698 1873 aa9.64□□□□□ -0.87
CIITA-214ENST00000636238 SH3TC1Q8TE82 1336 aa9.63□□□□□ -0.87
CIITA-214ENST00000636238 YDJCA8MPS7 323 aa9.63□□□□□ -0.87
CIITA-214ENST00000636238 HSP90B1P14625 803 aaKnown RBP9.63□□□□□ -0.87
CIITA-214ENST00000636238 MYL6BP14649 208 aa9.63□□□□□ -0.87
CIITA-214ENST00000636238 MMP14P50281 582 aa9.63□□□□□ -0.87
CIITA-214ENST00000636238 DCTN1Q14203 1278 aa9.63□□□□□ -0.87
CIITA-214ENST00000636238 WASHC4Q2M389 1173 aa9.63□□□□□ -0.87
CIITA-214ENST00000636238 LRP10Q7Z4F1 713 aa9.63□□□□□ -0.87
CIITA-214ENST00000636238 NGEFQ8N5V2 710 aa9.63□□□□□ -0.87
CIITA-214ENST00000636238 PITPNM2Q9BZ72 1349 aa9.62□□□□□ -0.87
CIITA-214ENST00000636238 TCERG1O14776 1098 aaKnown RBP9.62□□□□□ -0.87
CIITA-214ENST00000636238 TRPA1O75762 1119 aa9.62□□□□□ -0.87
CIITA-214ENST00000636238 TCIRG1Q13488 830 aa9.62□□□□□ -0.87
CIITA-214ENST00000636238 SF3B3Q15393 1217 aaKnown RBP9.62□□□□□ -0.87
CIITA-214ENST00000636238 NFE2L2Q16236 605 aa9.62□□□□□ -0.87
CIITA-214ENST00000636238 NLRP10Q86W26 655 aa9.62□□□□□ -0.87
CIITA-214ENST00000636238 CSRNP1Q96S65 589 aa9.62□□□□□ -0.87
CIITA-214ENST00000636238 ZIC5Q96T25 663 aa9.62□□□□□ -0.87
CIITA-214ENST00000636238 CFHR5Q9BXR6 569 aa9.62□□□□□ -0.87
CIITA-214ENST00000636238 TNRC18O15417 2968 aaPredicted RBP9.62□□□□□ -0.87
CIITA-214ENST00000636238 PSMD14O00487 310 aa9.61□□□□□ -0.87
CIITA-214ENST00000636238 SOX10P56693 466 aa9.61□□□□□ -0.87
CIITA-214ENST00000636238 ZNF280AP59817 542 aaPredicted RBP9.61□□□□□ -0.87
CIITA-214ENST00000636238 PDIA6Q15084 440 aa9.61□□□□□ -0.87
CIITA-214ENST00000636238 AGBL3Q8NEM8 1001 aa9.61□□□□□ -0.87
CIITA-214ENST00000636238 MIS18AQ9NYP9 233 aa9.61□□□□□ -0.87
CIITA-214ENST00000636238 TRMT112Q9UI30 125 aaKnown RBP9.61□□□□□ -0.87
CIITA-214ENST00000636238 HPS5Q9UPZ3 1129 aa9.61□□□□□ -0.87
CIITA-214ENST00000636238 VIL1P09327 827 aaKnown RBP9.6□□□□□ -0.87
CIITA-214ENST00000636238 WDR43Q15061 677 aaKnown RBP eCLIP9.6□□□□□ -0.87
CIITA-214ENST00000636238 KIF4BQ2VIQ3 1234 aa9.6□□□□□ -0.87
CIITA-214ENST00000636238 TBC1D10BQ4KMP7 808 aaPredicted RBP9.6□□□□□ -0.87
CIITA-214ENST00000636238 SAMD7Q7Z3H4 446 aa9.6□□□□□ -0.87
CIITA-214ENST00000636238 RASAL3Q86YV0 1011 aa9.6□□□□□ -0.87
CIITA-214ENST00000636238 PODXL2Q9NZ53 605 aa9.6□□□□□ -0.87
CIITA-214ENST00000636238 ADAMTS8Q9UP79 889 aa9.6□□□□□ -0.87
CIITA-214ENST00000636238 HOXB7P09629 217 aa9.59□□□□□ -0.87
CIITA-214ENST00000636238 LMOD3Q0VAK6 560 aa9.59□□□□□ -0.87
CIITA-214ENST00000636238 TRIM28Q13263 835 aaKnown RBP9.59□□□□□ -0.87
CIITA-214ENST00000636238 FBXO46Q6PJ61 603 aaPredicted RBP9.59□□□□□ -0.87
CIITA-214ENST00000636238 CDCA5Q96FF9 252 aa9.59□□□□□ -0.87
CIITA-214ENST00000636238 PLEKHF1Q96S99 279 aa9.59□□□□□ -0.87
CIITA-214ENST00000636238 GGA3Q9NZ52 723 aa9.59□□□□□ -0.87
CIITA-214ENST00000636238 TSPYL4Q9UJ04 414 aa9.59□□□□□ -0.87
CIITA-214ENST00000636238 HDAC9Q9UKV0 1011 aa9.59□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms