RNA–Protein interactions for RNA: ENST00000394536.4

PCDH1-203, Transcript of protocadherin 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PCDH1, Length 3,827 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-203ENST00000394536 APOBRQ0VD83 1088 aa18.93■□□□□ 0.62
PCDH1-203ENST00000394536 SEC62Q99442 399 aaKnown RBP18.93■□□□□ 0.62
PCDH1-203ENST00000394536 CBX8Q9HC52 389 aa18.92■□□□□ 0.62
PCDH1-203ENST00000394536 CHRNA2Q15822 529 aa18.92■□□□□ 0.62
PCDH1-203ENST00000394536 TTC39AQ5SRH9 613 aa18.92■□□□□ 0.62
PCDH1-203ENST00000394536 GCP02774 474 aa18.92■□□□□ 0.62
PCDH1-203ENST00000394536 SYTL4Q96C24 671 aaPredicted RBP18.92■□□□□ 0.62
PCDH1-203ENST00000394536 CHMP4CQ96CF2 233 aa18.92■□□□□ 0.62
PCDH1-203ENST00000394536 NCOA5Q9HCD5 579 aaKnown RBP18.92■□□□□ 0.62
PCDH1-203ENST00000394536 USP6P35125 1406 aa18.91■□□□□ 0.62
PCDH1-203ENST00000394536 PDIA4P13667 645 aaKnown RBP18.91■□□□□ 0.62
PCDH1-203ENST00000394536 RPS6KB1P23443 525 aa18.91■□□□□ 0.62
PCDH1-203ENST00000394536 TIMM10P62072 90 aa18.91■□□□□ 0.62
PCDH1-203ENST00000394536 ZSWIM6Q9HCJ5 1215 aa18.91■□□□□ 0.62
PCDH1-203ENST00000394536 CCDC158Q5M9N0 1113 aa18.91■□□□□ 0.62
PCDH1-203ENST00000394536 LEO1Q8WVC0 666 aaPredicted RBP18.91■□□□□ 0.62
PCDH1-203ENST00000394536 SIRT1Q96EB6 747 aa18.91■□□□□ 0.62
PCDH1-203ENST00000394536 DBNDD2Q9BQY9 259 aa18.91■□□□□ 0.62
PCDH1-203ENST00000394536 SERPINC1P01008 464 aa18.91■□□□□ 0.62
PCDH1-203ENST00000394536 RRP12Q5JTH9 1297 aaKnown RBP18.91■□□□□ 0.62
PCDH1-203ENST00000394536 HMG20BQ9P0W2 317 aa18.91■□□□□ 0.62
PCDH1-203ENST00000394536 CFAP74Q9C0B2 1584 aa18.91■□□□□ 0.62
PCDH1-203ENST00000394536 CPS1P31327 1500 aa18.9■□□□□ 0.62
PCDH1-203ENST00000394536 A0A087WWV3 80 aa18.9■□□□□ 0.62
PCDH1-203ENST00000394536 MNS1Q8NEH6 495 aa18.9■□□□□ 0.62
PCDH1-203ENST00000394536 CCDC57Q2TAC2 916 aa18.9■□□□□ 0.62
PCDH1-203ENST00000394536 ANO10Q9NW15 660 aa18.9■□□□□ 0.62
PCDH1-203ENST00000394536 SSH2Q76I76 1423 aa18.9■□□□□ 0.62
PCDH1-203ENST00000394536 SKILP12757 684 aa18.9■□□□□ 0.62
PCDH1-203ENST00000394536 NRBP1Q9UHY1 535 aa18.9■□□□□ 0.62
PCDH1-203ENST00000394536 TBX22Q9Y458 520 aa18.9■□□□□ 0.62
PCDH1-203ENST00000394536 A2ML1A8K2U0 1454 aa18.9■□□□□ 0.62
PCDH1-203ENST00000394536 DEPDC5O75140 1603 aa18.89■□□□□ 0.62
PCDH1-203ENST00000394536 MROH1Q8NDA8 1641 aa18.89■□□□□ 0.62
PCDH1-203ENST00000394536 MYO3AQ8NEV4 1616 aa18.89■□□□□ 0.62
PCDH1-203ENST00000394536 NR1I2O75469 434 aa18.89■□□□□ 0.62
PCDH1-203ENST00000394536 HSP90AB3PQ58FF7 597 aa18.89■□□□□ 0.62
PCDH1-203ENST00000394536 CCDC82Q8N4S0 544 aa18.89■□□□□ 0.62
PCDH1-203ENST00000394536 MCMDC2Q4G0Z9 681 aa18.89■□□□□ 0.61
PCDH1-203ENST00000394536 C8orf76Q96K31 380 aa18.89■□□□□ 0.61
PCDH1-203ENST00000394536 CCDC94Q9BW85 323 aaPredicted RBP18.89■□□□□ 0.61
PCDH1-203ENST00000394536 DDX21Q9NR30 783 aaKnown RBP eCLIP18.89■□□□□ 0.61
PCDH1-203ENST00000394536 GIGYF1O75420 1035 aaPredicted RBP18.89■□□□□ 0.61
PCDH1-203ENST00000394536 DHX16O60231 1041 aaKnown RBP18.88■□□□□ 0.61
PCDH1-203ENST00000394536 ATF3P18847 181 aa18.88■□□□□ 0.61
PCDH1-203ENST00000394536 OTUD7BQ6GQQ9 843 aa18.88■□□□□ 0.61
PCDH1-203ENST00000394536 USP16Q9Y5T5 823 aa18.88■□□□□ 0.61
PCDH1-203ENST00000394536 PES1O00541 588 aaKnown RBP18.88■□□□□ 0.61
PCDH1-203ENST00000394536 U2AF2P26368 475 aaKnown RBP eCLIP18.88■□□□□ 0.61
PCDH1-203ENST00000394536 EVA1CP58658 441 aa18.88■□□□□ 0.61
PCDH1-203ENST00000394536 ORAI2Q96SN7 254 aa18.88■□□□□ 0.61
PCDH1-203ENST00000394536 HSP90AA4PQ58FG1 418 aa18.87■□□□□ 0.61
PCDH1-203ENST00000394536 CCDC144CPQ8IYA2 1237 aa18.87■□□□□ 0.61
PCDH1-203ENST00000394536 AOPEPQ8N6M6 819 aa18.87■□□□□ 0.61
PCDH1-203ENST00000394536 BCL2L12Q9HB09 334 aa18.87■□□□□ 0.61
PCDH1-203ENST00000394536 ADGRB2O60241 1585 aa18.87■□□□□ 0.61
PCDH1-203ENST00000394536 ZC3H13Q5T200 1668 aaKnown RBP18.87■□□□□ 0.61
PCDH1-203ENST00000394536 CEP135Q66GS9 1140 aa18.87■□□□□ 0.61
PCDH1-203ENST00000394536 ZNF589Q86UQ0 364 aaPredicted RBP18.87■□□□□ 0.61
PCDH1-203ENST00000394536 IDH1O75874 414 aaKnown RBP18.87■□□□□ 0.61
PCDH1-203ENST00000394536 STX1AQ16623 288 aa18.87■□□□□ 0.61
PCDH1-203ENST00000394536 CABLES1Q8TDN4 633 aa18.87■□□□□ 0.61
PCDH1-203ENST00000394536 TM6SF1Q9BZW5 370 aa18.87■□□□□ 0.61
PCDH1-203ENST00000394536 CRB1P82279 1406 aa18.86■□□□□ 0.61
PCDH1-203ENST00000394536 POLA2Q14181 598 aa18.86■□□□□ 0.61
PCDH1-203ENST00000394536 ZSCAN16Q9H4T2 348 aaPredicted RBP18.86■□□□□ 0.61
PCDH1-203ENST00000394536 STRN4Q9NRL3 753 aa18.86■□□□□ 0.61
PCDH1-203ENST00000394536 PTPDC1A2A3K4 754 aa18.86■□□□□ 0.61
PCDH1-203ENST00000394536 SFPQP23246 707 aaKnown RBP eCLIP18.86■□□□□ 0.61
PCDH1-203ENST00000394536 KRT28Q7Z3Y7 464 aa18.86■□□□□ 0.61
PCDH1-203ENST00000394536 TMC6Q7Z403 805 aa18.86■□□□□ 0.61
PCDH1-203ENST00000394536 BABAM1Q9NWV8 329 aa18.86■□□□□ 0.61
PCDH1-203ENST00000394536 ORC3Q9UBD5 711 aaPredicted RBP18.86■□□□□ 0.61
PCDH1-203ENST00000394536 GOLGA8BA8MQT2 603 aa18.85■□□□□ 0.61
PCDH1-203ENST00000394536 CFAP100Q494V2 611 aa18.85■□□□□ 0.61
PCDH1-203ENST00000394536 SETD1BQ9UPS6 1966 aaKnown RBP18.85■□□□□ 0.61
PCDH1-203ENST00000394536 A0A1B0GVL5 298 aa18.85■□□□□ 0.61
PCDH1-203ENST00000394536 IMMTQ16891 758 aaKnown RBP18.85■□□□□ 0.61
PCDH1-203ENST00000394536 OLFM4Q6UX06 510 aa18.85■□□□□ 0.61
PCDH1-203ENST00000394536 TTC14Q96N46 770 aa18.85■□□□□ 0.61
PCDH1-203ENST00000394536 EIF2AK3Q9NZJ5 1116 aaKnown RBP18.85■□□□□ 0.61
PCDH1-203ENST00000394536 KIF18AQ8NI77 898 aa18.85■□□□□ 0.61
PCDH1-203ENST00000394536 MAP4K1Q92918 833 aa18.85■□□□□ 0.61
PCDH1-203ENST00000394536 CNNM1Q9NRU3 951 aa18.85■□□□□ 0.61
PCDH1-203ENST00000394536 TTLL5Q6EMB2 1281 aa18.84■□□□□ 0.61
PCDH1-203ENST00000394536 TMX1Q9H3N1 280 aa18.84■□□□□ 0.61
PCDH1-203ENST00000394536 HMGB1P09429 215 aaKnown RBP18.84■□□□□ 0.61
PCDH1-203ENST00000394536 TOM1L2Q6ZVM7 507 aa18.84■□□□□ 0.61
PCDH1-203ENST00000394536 SASH1O94885 1247 aa18.84■□□□□ 0.61
PCDH1-203ENST00000394536 SNRPA1P09661 255 aaKnown RBP18.84■□□□□ 0.61
PCDH1-203ENST00000394536 MARCKSP29966 332 aaPredicted RBP18.84■□□□□ 0.61
PCDH1-203ENST00000394536 ZNF790Q6PG37 636 aa18.84■□□□□ 0.61
PCDH1-203ENST00000394536 FTOQ9C0B1 505 aaKnown RBP eCLIP18.84■□□□□ 0.61
PCDH1-203ENST00000394536 PIK3C2BO00750 1634 aa18.84■□□□□ 0.61
PCDH1-203ENST00000394536 AKAP17AQ02040 695 aaKnown RBP18.83■□□□□ 0.61
PCDH1-203ENST00000394536 ERICH4A6NGS2 130 aa18.83■□□□□ 0.6
PCDH1-203ENST00000394536 EPB41L2O43491 1005 aaKnown RBP18.83■□□□□ 0.6
PCDH1-203ENST00000394536 SLC3A2P08195 630 aaKnown RBP18.83■□□□□ 0.6
PCDH1-203ENST00000394536 HOXB7P09629 217 aa18.83■□□□□ 0.6
PCDH1-203ENST00000394536 RASSF8Q8NHQ8 419 aa18.83■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms