RNA–Protein interactions for RNA: ENST00000340660.10

ATXN3-201, Transcript of ataxin 3, humanhuman

TSL 1 (best) BASIC

Gene ATXN3, Length 1,205 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-201ENST00000340660 LAMA3Q16787 3333 aa16.12■□□□□ 0.17
ATXN3-201ENST00000340660 H0YGN5 161 aa16.12■□□□□ 0.17
ATXN3-201ENST00000340660 RBM27Q9P2N5 1060 aaKnown RBP16.12■□□□□ 0.17
ATXN3-201ENST00000340660 SCNN1DP51172 638 aa16.11■□□□□ 0.17
ATXN3-201ENST00000340660 TYW1BQ6NUM6 668 aa16.11■□□□□ 0.17
ATXN3-201ENST00000340660 PRPF40BQ6NWY9 871 aaKnown RBP16.11■□□□□ 0.17
ATXN3-201ENST00000340660 GLIS2Q9BZE0 524 aaPredicted RBP16.11■□□□□ 0.17
ATXN3-201ENST00000340660 ZNF408Q9H9D4 720 aa16.11■□□□□ 0.17
ATXN3-201ENST00000340660 ZPR1O75312 459 aa16.1■□□□□ 0.17
ATXN3-201ENST00000340660 USP50Q70EL3 339 aaPredicted RBP16.1■□□□□ 0.17
ATXN3-201ENST00000340660 HDAC9Q9UKV0 1011 aa16.1■□□□□ 0.17
ATXN3-201ENST00000340660 BHMG1C9JSJ3 638 aaPredicted RBP16.09■□□□□ 0.17
ATXN3-201ENST00000340660 LMOD1P29536 600 aaPredicted RBP16.09■□□□□ 0.17
ATXN3-201ENST00000340660 HUNKP57058 714 aa16.09■□□□□ 0.17
ATXN3-201ENST00000340660 SOGA3Q5TF21 947 aa16.09■□□□□ 0.17
ATXN3-201ENST00000340660 FBXW7Q969H0 707 aa16.09■□□□□ 0.17
ATXN3-201ENST00000340660 PAPPA2Q9BXP8 1791 aa16.08■□□□□ 0.17
ATXN3-201ENST00000340660 CACNA1SQ13698 1873 aa16.08■□□□□ 0.17
ATXN3-201ENST00000340660 ZNF296Q8WUU4 475 aaPredicted RBP16.08■□□□□ 0.16
ATXN3-201ENST00000340660 RTL1A6NKG5 1358 aa16.08■□□□□ 0.16
ATXN3-201ENST00000340660 PPP1R3GB7ZBB8 358 aa16.07■□□□□ 0.16
ATXN3-201ENST00000340660 COL9A1P20849 921 aa16.07■□□□□ 0.16
ATXN3-201ENST00000340660 FKBP4Q02790 459 aaKnown RBP eCLIP16.07■□□□□ 0.16
ATXN3-201ENST00000340660 INTS5Q6P9B9 1019 aaKnown RBP16.07■□□□□ 0.16
ATXN3-201ENST00000340660 PPARGC1BQ86YN6 1023 aaKnown RBP16.07■□□□□ 0.16
ATXN3-201ENST00000340660 C7orf43Q8WVR3 580 aa16.07■□□□□ 0.16
ATXN3-201ENST00000340660 CSRNP1Q96S65 589 aa16.07■□□□□ 0.16
ATXN3-201ENST00000340660 HCSTQ9UBK5 93 aa16.07■□□□□ 0.16
ATXN3-201ENST00000340660 GJA3Q9Y6H8 435 aa16.07■□□□□ 0.16
ATXN3-201ENST00000340660 EDC4Q6P2E9 1401 aaKnown RBP16.07■□□□□ 0.16
ATXN3-201ENST00000340660 BCORQ6W2J9 1755 aa16.07■□□□□ 0.16
ATXN3-201ENST00000340660 AKAP11Q9UKA4 1901 aa16.07■□□□□ 0.16
ATXN3-201ENST00000340660 PDE6BP35913 854 aa16.06■□□□□ 0.16
ATXN3-201ENST00000340660 PDIA6Q15084 440 aa16.06■□□□□ 0.16
ATXN3-201ENST00000340660 E2F4Q16254 413 aa16.06■□□□□ 0.16
ATXN3-201ENST00000340660 CCDC24Q8N4L8 307 aa16.06■□□□□ 0.16
ATXN3-201ENST00000340660 KCTD12Q96CX2 325 aaKnown RBP16.06■□□□□ 0.16
ATXN3-201ENST00000340660 PDZRN3Q9UPQ7 1066 aa16.06■□□□□ 0.16
ATXN3-201ENST00000340660 EN2P19622 333 aaPredicted RBP16.05■□□□□ 0.16
ATXN3-201ENST00000340660 CCDC93Q567U6 631 aa16.05■□□□□ 0.16
ATXN3-201ENST00000340660 RGMBQ6NW40 437 aa16.05■□□□□ 0.16
ATXN3-201ENST00000340660 CNKSR1Q969H4 720 aa16.05■□□□□ 0.16
ATXN3-201ENST00000340660 BRIP1Q9BX63 1249 aa16.05■□□□□ 0.16
ATXN3-201ENST00000340660 RBBP6Q7Z6E9 1792 aaKnown RBP16.05■□□□□ 0.16
ATXN3-201ENST00000340660 ARFGEF2Q9Y6D5 1785 aa16.05■□□□□ 0.16
ATXN3-201ENST00000340660 EPAS1Q99814 870 aa16.04■□□□□ 0.16
ATXN3-201ENST00000340660 NARFQ9UHQ1 456 aa16.04■□□□□ 0.16
ATXN3-201ENST00000340660 RAPGEFL1Q9UHV5 662 aa16.04■□□□□ 0.16
ATXN3-201ENST00000340660 KIAA0100Q14667 2235 aaKnown RBP16.03■□□□□ 0.16
ATXN3-201ENST00000340660 TJP1Q07157 1748 aa16.03■□□□□ 0.16
ATXN3-201ENST00000340660 SOS1Q07889 1333 aaPredicted RBP16.03■□□□□ 0.16
ATXN3-201ENST00000340660 COL4A5P29400 1685 aa16.03■□□□□ 0.16
ATXN3-201ENST00000340660 SOX1O00570 391 aaPredicted RBP16.03■□□□□ 0.16
ATXN3-201ENST00000340660 PHKG2P15735 406 aa16.03■□□□□ 0.16
ATXN3-201ENST00000340660 IARSP41252 1262 aaKnown RBP16.03■□□□□ 0.16
ATXN3-201ENST00000340660 RRS1Q15050 365 aaKnown RBP16.03■□□□□ 0.16
ATXN3-201ENST00000340660 STYK1Q6J9G0 422 aa16.03■□□□□ 0.16
ATXN3-201ENST00000340660 OLFM4Q6UX06 510 aa16.03■□□□□ 0.16
ATXN3-201ENST00000340660 DDX12PQ92771 950 aa16.03■□□□□ 0.16
ATXN3-201ENST00000340660 SPG7Q9UQ90 795 aa16.03■□□□□ 0.16
ATXN3-201ENST00000340660 PTCD1O75127 700 aaKnown RBP16.01■□□□□ 0.15
ATXN3-201ENST00000340660 PLA2G5P39877 138 aa16.01■□□□□ 0.15
ATXN3-201ENST00000340660 CCDC102AQ96A19 550 aa16.01■□□□□ 0.15
ATXN3-201ENST00000340660 ARIH1Q9Y4X5 557 aaPredicted RBP16.01■□□□□ 0.15
ATXN3-201ENST00000340660 SRGNP10124 158 aa16■□□□□ 0.15
ATXN3-201ENST00000340660 PROX2Q3B8N5 592 aa16■□□□□ 0.15
ATXN3-201ENST00000340660 INTS3Q68E01 1043 aaKnown RBP16■□□□□ 0.15
ATXN3-201ENST00000340660 PRR5LQ6MZQ0 368 aa16■□□□□ 0.15
ATXN3-201ENST00000340660 DLK2Q6UY11 383 aa16■□□□□ 0.15
ATXN3-201ENST00000340660 LRCH3Q96II8 777 aa16■□□□□ 0.15
ATXN3-201ENST00000340660 PRO3102Q9H379 93 aa16■□□□□ 0.15
ATXN3-201ENST00000340660 WDR70Q9NW82 654 aa16■□□□□ 0.15
ATXN3-201ENST00000340660 HSP90AB2PQ58FF8 381 aa15.99■□□□□ 0.15
ATXN3-201ENST00000340660 C6orf132Q5T0Z8 1188 aa15.99■□□□□ 0.15
ATXN3-201ENST00000340660 IFNL2Q8IZJ0 200 aa15.99■□□□□ 0.15
ATXN3-201ENST00000340660 PGAP2Q9UHJ9 254 aa15.99■□□□□ 0.15
ATXN3-201ENST00000340660 ERBB4Q15303 1308 aa15.98■□□□□ 0.15
ATXN3-201ENST00000340660 SPDYE16A6NNV3 312 aaPredicted RBP15.98■□□□□ 0.15
ATXN3-201ENST00000340660 TBC1D8O95759 1140 aa15.98■□□□□ 0.15
ATXN3-201ENST00000340660 SLC10A3P09131 477 aa15.98■□□□□ 0.15
ATXN3-201ENST00000340660 ZNF157P51786 506 aaPredicted RBP15.98■□□□□ 0.15
ATXN3-201ENST00000340660 NCAPD2Q15021 1401 aa15.98■□□□□ 0.15
ATXN3-201ENST00000340660 ADARB2Q9NS39 739 aaKnown RBP15.98■□□□□ 0.15
ATXN3-201ENST00000340660 A0A1W2PP64 1363 aa15.98■□□□□ 0.15
ATXN3-201ENST00000340660 EIF6P56537 245 aaKnown RBP15.97■□□□□ 0.15
ATXN3-201ENST00000340660 PHF6Q8IWS0 365 aaKnown RBP eCLIP15.97■□□□□ 0.15
ATXN3-201ENST00000340660 MASTLQ96GX5 879 aa15.97■□□□□ 0.15
ATXN3-201ENST00000340660 COL15A1P39059 1388 aa15.97■□□□□ 0.15
ATXN3-201ENST00000340660 HDGFL2Q7Z4V5 671 aaPredicted RBP15.96■□□□□ 0.15
ATXN3-201ENST00000340660 MRPL50Q8N5N7 158 aaKnown RBP15.96■□□□□ 0.15
ATXN3-201ENST00000340660 COG3Q96JB2 828 aa15.96■□□□□ 0.15
ATXN3-201ENST00000340660 ERVV-2B6SEH9 535 aa15.95■□□□□ 0.14
ATXN3-201ENST00000340660 GPR25O00155 361 aa15.95■□□□□ 0.14
ATXN3-201ENST00000340660 JDP2Q8WYK2 163 aa15.95■□□□□ 0.14
ATXN3-201ENST00000340660 GPRC5DQ9NZD1 345 aa15.95■□□□□ 0.14
ATXN3-201ENST00000340660 STXBP5LQ9Y2K9 1186 aa15.95■□□□□ 0.14
ATXN3-201ENST00000340660 CDC37L1Q7L3B6 337 aa15.94■□□□□ 0.14
ATXN3-201ENST00000340660 NBPF3Q9H094 633 aa15.94■□□□□ 0.14
ATXN3-201ENST00000340660 SLC12A5Q9H2X9 1139 aa15.94■□□□□ 0.14
ATXN3-201ENST00000340660 RABGEF1Q9UJ41 708 aa15.94■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 65.5 ms