RNA–Protein interactions for RNA: ENST00000258499.7

USP44-201, Transcript of ubiquitin specific peptidase 44, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP44, Length 4,022 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP44-201ENST00000258499 TRDNQ13061 729 aa5.58□□□□□ -1.52
USP44-201ENST00000258499 CCAR2Q8N163 923 aaKnown RBP5.58□□□□□ -1.52
USP44-201ENST00000258499 SEC62Q99442 399 aaKnown RBP5.58□□□□□ -1.52
USP44-201ENST00000258499 ZBTB3Q9H5J0 574 aa5.58□□□□□ -1.52
USP44-201ENST00000258499 TBX22Q9Y458 520 aa5.58□□□□□ -1.52
USP44-201ENST00000258499 CRB1P82279 1406 aa5.58□□□□□ -1.52
USP44-201ENST00000258499 TFCP2Q12800 502 aa5.58□□□□□ -1.52
USP44-201ENST00000258499 LRMPQ12912 555 aa5.58□□□□□ -1.52
USP44-201ENST00000258499 LMBR1LQ6UX01 489 aa5.58□□□□□ -1.52
USP44-201ENST00000258499 NFXL1Q6ZNB6 911 aa5.58□□□□□ -1.52
USP44-201ENST00000258499 FSIP1Q8NA03 581 aa5.58□□□□□ -1.52
USP44-201ENST00000258499 NOL12Q9UGY1 213 aaKnown RBP eCLIP5.58□□□□□ -1.52
USP44-201ENST00000258499 V9GYY5 206 aaPredicted RBP5.58□□□□□ -1.52
USP44-201ENST00000258499 PPLO60437 1756 aa5.57□□□□□ -1.52
USP44-201ENST00000258499 SSH2Q76I76 1423 aa5.57□□□□□ -1.52
USP44-201ENST00000258499 NPHP3Q7Z494 1330 aa5.57□□□□□ -1.52
USP44-201ENST00000258499 A0A087WWV3 80 aa5.57□□□□□ -1.52
USP44-201ENST00000258499 CCAR1Q8IX12 1150 aaKnown RBP5.57□□□□□ -1.52
USP44-201ENST00000258499 FAM177A1Q8N128 213 aaPredicted RBP5.57□□□□□ -1.52
USP44-201ENST00000258499 CNKSR2Q8WXI2 1034 aa5.57□□□□□ -1.52
USP44-201ENST00000258499 ZNF396Q96N95 335 aaPredicted RBP5.57□□□□□ -1.52
USP44-201ENST00000258499 ORAI2Q96SN7 254 aa5.57□□□□□ -1.52
USP44-201ENST00000258499 DBNDD2Q9BQY9 259 aa5.57□□□□□ -1.52
USP44-201ENST00000258499 NCOA5Q9HCD5 579 aaKnown RBP5.57□□□□□ -1.52
USP44-201ENST00000258499 PYCARDQ9ULZ3 195 aa5.57□□□□□ -1.52
USP44-201ENST00000258499 NEURL4Q96JN8 1562 aa5.57□□□□□ -1.52
USP44-201ENST00000258499 GIGYF1O75420 1035 aaPredicted RBP5.57□□□□□ -1.52
USP44-201ENST00000258499 IFIT1P09914 478 aaKnown RBP5.57□□□□□ -1.52
USP44-201ENST00000258499 RPS6KB1P23443 525 aa5.57□□□□□ -1.52
USP44-201ENST00000258499 APOBRQ0VD83 1088 aa5.57□□□□□ -1.52
USP44-201ENST00000258499 HSP90AB3PQ58FF7 597 aa5.57□□□□□ -1.52
USP44-201ENST00000258499 CEP57L1Q8IYX8 460 aa5.57□□□□□ -1.52
USP44-201ENST00000258499 NAT10Q9H0A0 1025 aaKnown RBP5.57□□□□□ -1.52
USP44-201ENST00000258499 ZSWIM6Q9HCJ5 1215 aa5.57□□□□□ -1.52
USP44-201ENST00000258499 U3KPZ7 1027 aaPredicted RBP5.57□□□□□ -1.52
USP44-201ENST00000258499 ARHGEF28Q8N1W1 1705 aaKnown RBP5.57□□□□□ -1.52
USP44-201ENST00000258499 RIOK3O14730 519 aaKnown RBP5.57□□□□□ -1.52
USP44-201ENST00000258499 TIMM10P62072 90 aa5.57□□□□□ -1.52
USP44-201ENST00000258499 POLA2Q14181 598 aa5.57□□□□□ -1.52
USP44-201ENST00000258499 ZNF589Q86UQ0 364 aaPredicted RBP5.57□□□□□ -1.52
USP44-201ENST00000258499 MYRIPQ8NFW9 859 aa5.57□□□□□ -1.52
USP44-201ENST00000258499 CABLES1Q8TDN4 633 aa5.57□□□□□ -1.52
USP44-201ENST00000258499 LEO1Q8WVC0 666 aaPredicted RBP5.57□□□□□ -1.52
USP44-201ENST00000258499 SYTL4Q96C24 671 aaPredicted RBP5.57□□□□□ -1.52
USP44-201ENST00000258499 CBX8Q9HC52 389 aa5.57□□□□□ -1.52
USP44-201ENST00000258499 DDX21Q9NR30 783 aaKnown RBP eCLIP5.57□□□□□ -1.52
USP44-201ENST00000258499 CEP126Q9P2H0 1117 aa5.57□□□□□ -1.52
USP44-201ENST00000258499 DIP2CQ9Y2E4 1556 aa5.56□□□□□ -1.52
USP44-201ENST00000258499 NR1I2O75469 434 aa5.56□□□□□ -1.52
USP44-201ENST00000258499 TTC39AQ5SRH9 613 aa5.56□□□□□ -1.52
USP44-201ENST00000258499 CPLX2Q6PUV4 134 aaKnown RBP5.56□□□□□ -1.52
USP44-201ENST00000258499 HMG20BQ9P0W2 317 aa5.56□□□□□ -1.52
USP44-201ENST00000258499 ATF3P18847 181 aa5.56□□□□□ -1.52
USP44-201ENST00000258499 TERF1P54274 439 aa5.56□□□□□ -1.52
USP44-201ENST00000258499 PTPN14Q15678 1187 aa5.56□□□□□ -1.52
USP44-201ENST00000258499 RRP12Q5JTH9 1297 aaKnown RBP5.56□□□□□ -1.52
USP44-201ENST00000258499 OTUD7BQ6GQQ9 843 aa5.56□□□□□ -1.52
USP44-201ENST00000258499 TTC14Q96N46 770 aa5.56□□□□□ -1.52
USP44-201ENST00000258499 NRBP1Q9UHY1 535 aa5.56□□□□□ -1.52
USP44-201ENST00000258499 SASH1O94885 1247 aa5.56□□□□□ -1.52
USP44-201ENST00000258499 CDK11BP21127 795 aaKnown RBP5.56□□□□□ -1.52
USP44-201ENST00000258499 TRIM29Q14134 588 aa5.56□□□□□ -1.52
USP44-201ENST00000258499 CCDC57Q2TAC2 916 aa5.56□□□□□ -1.52
USP44-201ENST00000258499 LRRFIP1Q32MZ4 808 aaKnown RBP5.56□□□□□ -1.52
USP44-201ENST00000258499 MCMDC2Q4G0Z9 681 aa5.56□□□□□ -1.52
USP44-201ENST00000258499 CCDC158Q5M9N0 1113 aa5.56□□□□□ -1.52
USP44-201ENST00000258499 KRT28Q7Z3Y7 464 aa5.56□□□□□ -1.52
USP44-201ENST00000258499 PDILTQ8N807 584 aa5.56□□□□□ -1.52
USP44-201ENST00000258499 STRN4Q9NRL3 753 aa5.56□□□□□ -1.52
USP44-201ENST00000258499 BABAM1Q9NWV8 329 aa5.56□□□□□ -1.52
USP44-201ENST00000258499 EIF2AK3Q9NZJ5 1116 aaKnown RBP5.56□□□□□ -1.52
USP44-201ENST00000258499 PTPDC1A2A3K4 754 aa5.55□□□□□ -1.52
USP44-201ENST00000258499 CHGBP05060 677 aa5.55□□□□□ -1.52
USP44-201ENST00000258499 LHX8Q68G74 356 aa5.55□□□□□ -1.52
USP44-201ENST00000258499 ZNF790Q6PG37 636 aa5.55□□□□□ -1.52
USP44-201ENST00000258499 CCDC144CPQ8IYA2 1237 aa5.55□□□□□ -1.52
USP44-201ENST00000258499 CCDC82Q8N4S0 544 aa5.55□□□□□ -1.52
USP44-201ENST00000258499 ZNF496Q96IT1 587 aaPredicted RBP5.55□□□□□ -1.52
USP44-201ENST00000258499 C8orf76Q96K31 380 aa5.55□□□□□ -1.52
USP44-201ENST00000258499 TM6SF1Q9BZW5 370 aa5.55□□□□□ -1.52
USP44-201ENST00000258499 FTOQ9C0B1 505 aaKnown RBP eCLIP5.55□□□□□ -1.52
USP44-201ENST00000258499 ANO10Q9NW15 660 aa5.55□□□□□ -1.52
USP44-201ENST00000258499 USP16Q9Y5T5 823 aa5.55□□□□□ -1.52
USP44-201ENST00000258499 USP32Q8NFA0 1604 aa5.55□□□□□ -1.52
USP44-201ENST00000258499 GOLGA8BA8MQT2 603 aa5.55□□□□□ -1.52
USP44-201ENST00000258499 IDH1O75874 414 aaKnown RBP5.55□□□□□ -1.52
USP44-201ENST00000258499 SERPINC1P01008 464 aa5.55□□□□□ -1.52
USP44-201ENST00000258499 HOXB7P09629 217 aa5.55□□□□□ -1.52
USP44-201ENST00000258499 SKILP12757 684 aa5.55□□□□□ -1.52
USP44-201ENST00000258499 PDIA4P13667 645 aaKnown RBP5.55□□□□□ -1.52
USP44-201ENST00000258499 SLFNL1Q499Z3 407 aa5.55□□□□□ -1.52
USP44-201ENST00000258499 HSP90AA4PQ58FG1 418 aa5.55□□□□□ -1.52
USP44-201ENST00000258499 TOM1L2Q6ZVM7 507 aa5.55□□□□□ -1.52
USP44-201ENST00000258499 AOPEPQ8N6M6 819 aa5.55□□□□□ -1.52
USP44-201ENST00000258499 MAP4K1Q92918 833 aa5.55□□□□□ -1.52
USP44-201ENST00000258499 BCL2L12Q9HB09 334 aa5.55□□□□□ -1.52
USP44-201ENST00000258499 TAF6LQ9Y6J9 622 aa5.55□□□□□ -1.52
USP44-201ENST00000258499 SNRPA1P09661 255 aaKnown RBP5.55□□□□□ -1.52
USP44-201ENST00000258499 U2AF2P26368 475 aaKnown RBP eCLIP5.55□□□□□ -1.52
USP44-201ENST00000258499 EVA1CP58658 441 aa5.55□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms