RNA–Protein interactions for RNA: ENST00000337299.6

COL2A1-201, Transcript of collagen type II alpha 1 chain, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene COL2A1, Length 4,257 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1-201ENST00000337299 NDRG3Q9UGV2 375 aa12.34□□□□□ -0.43
COL2A1-201ENST00000337299 NTNG1Q9Y2I2 539 aa12.34□□□□□ -0.43
COL2A1-201ENST00000337299 RREB1Q92766 1687 aa12.34□□□□□ -0.43
COL2A1-201ENST00000337299 H7C1Q1 480 aa12.34□□□□□ -0.43
COL2A1-201ENST00000337299 PRKRAO75569 313 aaKnown RBP12.34□□□□□ -0.43
COL2A1-201ENST00000337299 TFPIP10646 304 aa12.34□□□□□ -0.43
COL2A1-201ENST00000337299 ADRB3P13945 408 aa12.34□□□□□ -0.43
COL2A1-201ENST00000337299 RAB13P51153 203 aa12.34□□□□□ -0.43
COL2A1-201ENST00000337299 SIM1P81133 766 aaPredicted RBP12.34□□□□□ -0.43
COL2A1-201ENST00000337299 SNTB1Q13884 538 aaKnown RBP12.34□□□□□ -0.43
COL2A1-201ENST00000337299 ZNF273Q14593 569 aa12.34□□□□□ -0.43
COL2A1-201ENST00000337299 RAB11BQ15907 218 aa12.34□□□□□ -0.43
COL2A1-201ENST00000337299 ZNF628Q5EBL2 1059 aa12.34□□□□□ -0.43
COL2A1-201ENST00000337299 C6orf132Q5T0Z8 1188 aa12.34□□□□□ -0.43
COL2A1-201ENST00000337299 ZC3H14Q6PJT7 736 aaKnown RBP12.34□□□□□ -0.43
COL2A1-201ENST00000337299 LRRC69Q6ZNQ3 347 aa12.34□□□□□ -0.43
COL2A1-201ENST00000337299 BPIFCQ8NFQ6 507 aa12.34□□□□□ -0.43
COL2A1-201ENST00000337299 DERL3Q96Q80 235 aa12.34□□□□□ -0.43
COL2A1-201ENST00000337299 NPAS1Q99742 590 aa12.34□□□□□ -0.43
COL2A1-201ENST00000337299 ARHGAP9Q9BRR9 750 aa12.34□□□□□ -0.43
COL2A1-201ENST00000337299 LIPT1Q9Y234 373 aa12.34□□□□□ -0.43
COL2A1-201ENST00000337299 CKAP5Q14008 2032 aa12.34□□□□□ -0.43
COL2A1-201ENST00000337299 MEIKINA0A087WXM9 373 aa12.34□□□□□ -0.43
COL2A1-201ENST00000337299 DRGXA6NNA5 263 aa12.34□□□□□ -0.43
COL2A1-201ENST00000337299 KCNJ13O60928 360 aa12.34□□□□□ -0.43
COL2A1-201ENST00000337299 LEFTY1O75610 366 aa12.34□□□□□ -0.43
COL2A1-201ENST00000337299 KNG1P01042 644 aa12.34□□□□□ -0.43
COL2A1-201ENST00000337299 OR8G3PP0DMU2 310 aa12.34□□□□□ -0.43
COL2A1-201ENST00000337299 NQO2P16083 231 aa12.34□□□□□ -0.43
COL2A1-201ENST00000337299 MAOAP21397 527 aa12.34□□□□□ -0.43
COL2A1-201ENST00000337299 PTBP1P26599 531 aaKnown RBP eCLIP12.34□□□□□ -0.43
COL2A1-201ENST00000337299 CMPK1P30085 196 aa12.34□□□□□ -0.43
COL2A1-201ENST00000337299 HLXQ14774 488 aaPredicted RBP12.34□□□□□ -0.43
COL2A1-201ENST00000337299 EIF2S3LQ2VIR3 472 aaKnown RBP12.34□□□□□ -0.43
COL2A1-201ENST00000337299 GLYR1Q49A26 553 aaPredicted RBP12.34□□□□□ -0.43
COL2A1-201ENST00000337299 C9orf152Q5JTZ5 239 aa12.34□□□□□ -0.43
COL2A1-201ENST00000337299 UBE2NLQ5JXB2 153 aa12.34□□□□□ -0.43
COL2A1-201ENST00000337299 TMPRSS9Q7Z410 1059 aa12.34□□□□□ -0.43
COL2A1-201ENST00000337299 CDH26Q8IXH8 852 aa12.34□□□□□ -0.43
COL2A1-201ENST00000337299 TMEM239Q8WW34 195 aa12.34□□□□□ -0.43
COL2A1-201ENST00000337299 FOXN4Q96NZ1 517 aa12.34□□□□□ -0.43
COL2A1-201ENST00000337299 INTS14Q96SY0 518 aa12.34□□□□□ -0.43
COL2A1-201ENST00000337299 SDHCQ99643 169 aaPredicted RBP12.34□□□□□ -0.43
COL2A1-201ENST00000337299 WDR77Q9BQA1 342 aaPredicted RBP12.34□□□□□ -0.43
COL2A1-201ENST00000337299 URGCP-MRPS24S4R325 110 aa12.34□□□□□ -0.43
COL2A1-201ENST00000337299 TTC3P53804 2025 aa12.33□□□□□ -0.44
COL2A1-201ENST00000337299 CCDC88CQ9P219 2028 aa12.33□□□□□ -0.44
COL2A1-201ENST00000337299 SERPINA5P05154 406 aa12.33□□□□□ -0.44
COL2A1-201ENST00000337299 POU3F2P20265 443 aaPredicted RBP12.33□□□□□ -0.44
COL2A1-201ENST00000337299 SLC6A1P30531 599 aa12.33□□□□□ -0.44
COL2A1-201ENST00000337299 CD80P33681 288 aa12.33□□□□□ -0.44
COL2A1-201ENST00000337299 GABRA3P34903 492 aa12.33□□□□□ -0.44
COL2A1-201ENST00000337299 CD79BP40259 229 aa12.33□□□□□ -0.44
COL2A1-201ENST00000337299 CHAF1BQ13112 559 aa12.33□□□□□ -0.44
COL2A1-201ENST00000337299 AFMIDQ63HM1 303 aa12.33□□□□□ -0.44
COL2A1-201ENST00000337299 TMEM71Q6P5X7 295 aa12.33□□□□□ -0.44
COL2A1-201ENST00000337299 NKAIN4Q8IVV8 208 aa12.33□□□□□ -0.44
COL2A1-201ENST00000337299 OR9A2Q8NGT5 310 aa12.33□□□□□ -0.44
COL2A1-201ENST00000337299 PLA2G12AQ9BZM1 189 aa12.33□□□□□ -0.44
COL2A1-201ENST00000337299 MYNNQ9NPC7 610 aa12.33□□□□□ -0.44
COL2A1-201ENST00000337299 GPATCH2Q9NW75 528 aa12.33□□□□□ -0.44
COL2A1-201ENST00000337299 ASIC5Q9NY37 505 aa12.33□□□□□ -0.44
COL2A1-201ENST00000337299 LSM5Q9Y4Y9 91 aaKnown RBP12.33□□□□□ -0.44
COL2A1-201ENST00000337299 DDX60Q8IY21 1712 aaKnown RBP12.33□□□□□ -0.44
COL2A1-201ENST00000337299 NME1P15531 152 aaKnown RBP12.33□□□□□ -0.44
COL2A1-201ENST00000337299 KCNJ3P48549 501 aa12.33□□□□□ -0.44
COL2A1-201ENST00000337299 ENPP2Q13822 863 aa12.33□□□□□ -0.44
COL2A1-201ENST00000337299 LINC00303Q3SY05 128 aa12.33□□□□□ -0.44
COL2A1-201ENST00000337299 PRRT3Q5FWE3 981 aa12.33□□□□□ -0.44
COL2A1-201ENST00000337299 TMEM255BQ8WV15 326 aa12.33□□□□□ -0.44
COL2A1-201ENST00000337299 BPIFA2Q96DR5 249 aa12.33□□□□□ -0.44
COL2A1-201ENST00000337299 GAL3ST4Q96RP7 486 aa12.33□□□□□ -0.44
COL2A1-201ENST00000337299 C1QTNF2Q9BXJ5 285 aa12.33□□□□□ -0.44
COL2A1-201ENST00000337299 MEPEQ9NQ76 525 aaPredicted RBP12.33□□□□□ -0.44
COL2A1-201ENST00000337299 SMCO4Q9NRQ5 59 aa12.33□□□□□ -0.44
COL2A1-201ENST00000337299 CYSLTR2Q9NS75 346 aa12.33□□□□□ -0.44
COL2A1-201ENST00000337299 FTSJ1Q9UET6 329 aa12.33□□□□□ -0.44
COL2A1-201ENST00000337299 UGDHO60701 494 aa12.33□□□□□ -0.44
COL2A1-201ENST00000337299 ASGR2P07307 311 aa12.33□□□□□ -0.44
COL2A1-201ENST00000337299 OR8U9P0C7N5 309 aa12.33□□□□□ -0.44
COL2A1-201ENST00000337299 VEGFBP49765 207 aa12.33□□□□□ -0.44
COL2A1-201ENST00000337299 ABCA11PQ4W5N1 156 aa12.33□□□□□ -0.44
COL2A1-201ENST00000337299 ARHGAP11AQ6P4F7 1023 aa12.33□□□□□ -0.44
COL2A1-201ENST00000337299 LEG1Q6P5S2 330 aa12.33□□□□□ -0.44
COL2A1-201ENST00000337299 LIN28BQ6ZN17 250 aaKnown RBP eCLIP12.33□□□□□ -0.444e-8■■■■□ 19.8
COL2A1-201ENST00000337299 LINC00518Q8N0U6 118 aa12.33□□□□□ -0.44
COL2A1-201ENST00000337299 ARL14Q8N4G2 192 aa12.33□□□□□ -0.44
COL2A1-201ENST00000337299 OR52N1Q8NH53 320 aa12.33□□□□□ -0.44
COL2A1-201ENST00000337299 OR8D1Q8WZ84 308 aa12.33□□□□□ -0.44
COL2A1-201ENST00000337299 NUS1Q96E22 293 aa12.33□□□□□ -0.44
COL2A1-201ENST00000337299 RBP7Q96R05 134 aa12.33□□□□□ -0.44
COL2A1-201ENST00000337299 ADAT1Q9BUB4 502 aaKnown RBP12.33□□□□□ -0.44
COL2A1-201ENST00000337299 PCBD2Q9H0N5 130 aa12.33□□□□□ -0.44
COL2A1-201ENST00000337299 CHST8Q9H2A9 424 aa12.33□□□□□ -0.44
COL2A1-201ENST00000337299 TNFSF12-TNFSF13A0A0A6YY99 330 aa12.32□□□□□ -0.44
COL2A1-201ENST00000337299 TMEM200CA6NKL6 621 aa12.32□□□□□ -0.44
COL2A1-201ENST00000337299 TNFSF12O43508 249 aa12.32□□□□□ -0.44
COL2A1-201ENST00000337299 HOXB5P09067 269 aa12.32□□□□□ -0.44
COL2A1-201ENST00000337299 ICAM2P13598 275 aa12.32□□□□□ -0.44
COL2A1-201ENST00000337299 TYRP14679 529 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms