RNA–Protein interactions for RNA: ENST00000597776.1

LSM4-205, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 2

Gene LSM4, Length 446 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM4-205	ENST00000597776	IQCA1L	A6NCM1	817 aa		13.84	□□□□□ -0.19
LSM4-205	ENST00000597776	GIGYF2	Q6Y7W6	1299 aa	Known RBP	13.84	□□□□□ -0.19
LSM4-205	ENST00000597776	NECTIN2	Q92692	538 aa		13.84	□□□□□ -0.19
LSM4-205	ENST00000597776	COL4A5	P29400	1685 aa		13.84	□□□□□ -0.19
LSM4-205	ENST00000597776	TCERG1	O14776	1098 aa	Known RBP	13.83	□□□□□ -0.2
LSM4-205	ENST00000597776	NEUROD2	Q15784	382 aa		13.83	□□□□□ -0.2
LSM4-205	ENST00000597776	COL13A1	Q5TAT6	717 aa	Predicted RBP	13.83	□□□□□ -0.2
LSM4-205	ENST00000597776	LDHD	Q86WU2	507 aa		13.83	□□□□□ -0.2
LSM4-205	ENST00000597776	MYBBP1A	Q9BQG0	1328 aa	Known RBP	13.83	□□□□□ -0.2
LSM4-205	ENST00000597776	HOXA10	P31260	410 aa	Predicted RBP	13.82	□□□□□ -0.2
LSM4-205	ENST00000597776	LMOD3	Q0VAK6	560 aa		13.82	□□□□□ -0.2
LSM4-205	ENST00000597776	KRT24	Q2M2I5	525 aa		13.82	□□□□□ -0.2
LSM4-205	ENST00000597776	EAPP	Q56P03	285 aa	Predicted RBP	13.82	□□□□□ -0.2
LSM4-205	ENST00000597776	PSMD1	Q99460	953 aa		13.82	□□□□□ -0.2
LSM4-205	ENST00000597776	SCN4A	P35499	1836 aa		13.82	□□□□□ -0.2
LSM4-205	ENST00000597776	RNF123	Q5XPI4	1314 aa		13.82	□□□□□ -0.2
LSM4-205	ENST00000597776	FZD9	O00144	591 aa		13.81	□□□□□ -0.2
LSM4-205	ENST00000597776	PPEF1	O14829	653 aa	Predicted RBP	13.81	□□□□□ -0.2
LSM4-205	ENST00000597776	HSPA1A	P0DMV8	641 aa	Known RBP	13.81	□□□□□ -0.2
LSM4-205	ENST00000597776	HSPA1B	P0DMV9	641 aa	Known RBP	13.81	□□□□□ -0.2
LSM4-205	ENST00000597776	PARP10	Q53GL7	1025 aa		13.81	□□□□□ -0.2
LSM4-205	ENST00000597776	PPP1R42	Q7Z4L9	355 aa		13.81	□□□□□ -0.2
LSM4-205	ENST00000597776	RBM17	Q96I25	401 aa	Known RBP	13.81	□□□□□ -0.2
LSM4-205	ENST00000597776	CREBZF	Q9NS37	354 aa		13.81	□□□□□ -0.2
LSM4-205	ENST00000597776	BABAM1	Q9NWV8	329 aa		13.81	□□□□□ -0.2
LSM4-205	ENST00000597776	MKRN1	Q9UHC7	482 aa	Known RBP	13.81	□□□□□ -0.2
LSM4-205	ENST00000597776	HACL1	Q9UJ83	578 aa		13.81	□□□□□ -0.2
LSM4-205	ENST00000597776	EPHX2	P34913	555 aa		13.8	□□□□□ -0.2
LSM4-205	ENST00000597776	AIMP1	Q12904	312 aa	Known RBP	13.8	□□□□□ -0.2
LSM4-205	ENST00000597776	CC2D2B	Q6DHV5	1058 aa		13.8	□□□□□ -0.2
LSM4-205	ENST00000597776	COPS6	Q7L5N1	327 aa		13.8	□□□□□ -0.2
LSM4-205	ENST00000597776	XAGE3	Q8WTP9	111 aa		13.8	□□□□□ -0.2
LSM4-205	ENST00000597776	JDP2	Q8WYK2	163 aa		13.8	□□□□□ -0.2
LSM4-205	ENST00000597776	CRAMP1	Q96RY5	1269 aa		13.8	□□□□□ -0.2
LSM4-205	ENST00000597776	UTP14A	Q9BVJ6	771 aa	Known RBP	13.8	□□□□□ -0.2
LSM4-205	ENST00000597776	LAS1L	Q9Y4W2	734 aa	Known RBP	13.8	□□□□□ -0.2
LSM4-205	ENST00000597776	PASK	Q96RG2	1323 aa		13.8	□□□□□ -0.2
LSM4-205	ENST00000597776	GPC2	Q8N158	579 aa		13.79	□□□□□ -0.2
LSM4-205	ENST00000597776	ZNF428	Q96B54	188 aa		13.79	□□□□□ -0.2
LSM4-205	ENST00000597776	NLRP3	Q96P20	1036 aa		13.79	□□□□□ -0.2
LSM4-205	ENST00000597776	TRIM35	Q9UPQ4	493 aa		13.79	□□□□□ -0.2
LSM4-205	ENST00000597776	CLEC11A	Q9Y240	323 aa		13.79	□□□□□ -0.2
LSM4-205	ENST00000597776	GJA3	Q9Y6H8	435 aa		13.79	□□□□□ -0.2
LSM4-205	ENST00000597776	ADAMTSL1	Q8N6G6	1762 aa		13.78	□□□□□ -0.2
LSM4-205	ENST00000597776	CHL1	O00533	1208 aa		13.78	□□□□□ -0.2
LSM4-205	ENST00000597776	ITGBL1	O95965	494 aa	Predicted RBP	13.78	□□□□□ -0.2
LSM4-205	ENST00000597776	HCLS1	P14317	486 aa	Predicted RBP	13.78	□□□□□ -0.2
LSM4-205	ENST00000597776	WDR43	Q15061	677 aa	Known RBP eCLIP	13.78	□□□□□ -0.2
LSM4-205	ENST00000597776	NLRP10	Q86W26	655 aa		13.78	□□□□□ -0.2
LSM4-205	ENST00000597776	LARGE2	Q8N3Y3	721 aa		13.78	□□□□□ -0.2
LSM4-205	ENST00000597776	RUNDC1	Q96C34	613 aa		13.78	□□□□□ -0.2
LSM4-205	ENST00000597776	ANKRD36C	Q5JPF3	1778 aa		13.78	□□□□□ -0.2
LSM4-205	ENST00000597776	ABCC4	O15439	1325 aa		13.77	□□□□□ -0.21
LSM4-205	ENST00000597776	EIF6	P56537	245 aa	Known RBP	13.77	□□□□□ -0.21
LSM4-205	ENST00000597776	LTBP1	Q14766	1721 aa		13.77	□□□□□ -0.21
LSM4-205	ENST00000597776	SLC10A5	Q5PT55	438 aa		13.77	□□□□□ -0.21
LSM4-205	ENST00000597776	MAP1S	Q66K74	1059 aa	Predicted RBP	13.77	□□□□□ -0.21
LSM4-205	ENST00000597776	DDX21	Q9NR30	783 aa	Known RBP eCLIP	13.77	□□□□□ -0.21
LSM4-205	ENST00000597776	CHPF2	Q9P2E5	772 aa		13.77	□□□□□ -0.21
LSM4-205	ENST00000597776	ADAMTS8	Q9UP79	889 aa		13.77	□□□□□ -0.21
LSM4-205	ENST00000597776	LAMB2	P55268	1798 aa		13.76	□□□□□ -0.21
LSM4-205	ENST00000597776	CNTNAP1	P78357	1384 aa		13.76	□□□□□ -0.21
LSM4-205	ENST00000597776	AOC3	Q16853	763 aa		13.76	□□□□□ -0.21
LSM4-205	ENST00000597776	GRIPAP1	Q4V328	841 aa		13.76	□□□□□ -0.21
LSM4-205	ENST00000597776	ATP6V0A2	Q9Y487	856 aa		13.76	□□□□□ -0.21
LSM4-205	ENST00000597776	TMEM88B	A6NKF7	163 aa		13.75	□□□□□ -0.21
LSM4-205	ENST00000597776	PPIP5K2	O43314	1243 aa		13.75	□□□□□ -0.21
LSM4-205	ENST00000597776	SCNN1D	P51172	638 aa		13.75	□□□□□ -0.21
LSM4-205	ENST00000597776	TCIRG1	Q13488	830 aa		13.75	□□□□□ -0.21
LSM4-205	ENST00000597776	HSP90AB3P	Q58FF7	597 aa		13.75	□□□□□ -0.21
LSM4-205	ENST00000597776	HDGFL1	Q5TGJ6	251 aa		13.75	□□□□□ -0.21
LSM4-205	ENST00000597776	PNMA8A	Q86V59	439 aa	Predicted RBP	13.75	□□□□□ -0.21
LSM4-205	ENST00000597776	NIM1K	Q8IY84	436 aa		13.75	□□□□□ -0.21
LSM4-205	ENST00000597776	TNS4	Q8IZW8	715 aa		13.75	□□□□□ -0.21
LSM4-205	ENST00000597776	CNTROB	Q8N137	903 aa		13.75	□□□□□ -0.21
LSM4-205	ENST00000597776	TRMT112	Q9UI30	125 aa	Known RBP	13.75	□□□□□ -0.21
LSM4-205	ENST00000597776	CAPN15	O75808	1086 aa		13.74	□□□□□ -0.21
LSM4-205	ENST00000597776	LMOD1	P29536	600 aa	Predicted RBP	13.74	□□□□□ -0.21
LSM4-205	ENST00000597776	EPS15	P42566	896 aa		13.74	□□□□□ -0.21
LSM4-205	ENST00000597776	TMX4	Q9H1E5	349 aa	Predicted RBP	13.74	□□□□□ -0.21
LSM4-205	ENST00000597776	SH3TC1	Q8TE82	1336 aa		13.73	□□□□□ -0.21
LSM4-205	ENST00000597776	ATP5J2-PTCD1	G3V325	749 aa		13.72	□□□□□ -0.21
LSM4-205	ENST00000597776	BBOX1	O75936	387 aa		13.72	□□□□□ -0.21
LSM4-205	ENST00000597776	VEGFB	P49765	207 aa		13.72	□□□□□ -0.21
LSM4-205	ENST00000597776	FMR1	Q06787	632 aa	Known RBP eCLIP	13.72	□□□□□ -0.21
LSM4-205	ENST00000597776	DUSP27	Q5VZP5	1158 aa		13.72	□□□□□ -0.21
LSM4-205	ENST00000597776	DPP8	Q6V1X1	898 aa	Predicted RBP	13.72	□□□□□ -0.21
LSM4-205	ENST00000597776	DDX46	Q7L014	1031 aa	Known RBP	13.72	□□□□□ -0.21
LSM4-205	ENST00000597776	PLBD2	Q8NHP8	589 aa		13.72	□□□□□ -0.21
LSM4-205	ENST00000597776	RTFDC1	Q9BY42	306 aa	Predicted RBP	13.72	□□□□□ -0.21
LSM4-205	ENST00000597776	PRKRIP1	Q9H875	184 aa	Predicted RBP	13.72	□□□□□ -0.21
LSM4-205	ENST00000597776	DDX60	Q8IY21	1712 aa	Known RBP	13.71	□□□□□ -0.21
LSM4-205	ENST00000597776	HOXB7	P09629	217 aa		13.71	□□□□□ -0.21
LSM4-205	ENST00000597776	GRAP	Q13588	217 aa		13.71	□□□□□ -0.21
LSM4-205	ENST00000597776	SP8	Q8IXZ3	490 aa		13.71	□□□□□ -0.21
LSM4-205	ENST00000597776	MPND	Q8N594	471 aa		13.71	□□□□□ -0.21
LSM4-205	ENST00000597776	GRAPL	Q8TC17	118 aa	Predicted RBP	13.71	□□□□□ -0.21
LSM4-205	ENST00000597776	CFAP44	Q96MT7	982 aa		13.71	□□□□□ -0.21
LSM4-205	ENST00000597776	MBIP	Q9NS73	344 aa		13.71	□□□□□ -0.21
LSM4-205	ENST00000597776	DBF4	Q9UBU7	674 aa	Predicted RBP	13.71	□□□□□ -0.21

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