RNA–Protein interactions for RNA: ENST00000594298.5

SHKBP1-203, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 716 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-203ENST00000594298 GIGYF2Q6Y7W6 1299 aaKnown RBP23.06■■□□□ 1.28
SHKBP1-203ENST00000594298 HACL1Q9UJ83 578 aa23.06■■□□□ 1.28
SHKBP1-203ENST00000594298 GPTP24298 496 aa23.05■■□□□ 1.28
SHKBP1-203ENST00000594298 RPGRQ92834 1020 aaKnown RBP23.05■■□□□ 1.28
SHKBP1-203ENST00000594298 PRKRIP1Q9H875 184 aaPredicted RBP23.05■■□□□ 1.28
SHKBP1-203ENST00000594298 BABAM1Q9NWV8 329 aa23.05■■□□□ 1.28
SHKBP1-203ENST00000594298 TSPYL4Q9UJ04 414 aa23.05■■□□□ 1.28
SHKBP1-203ENST00000594298 NTSR2O95665 410 aa23.04■■□□□ 1.28
SHKBP1-203ENST00000594298 LRP10Q7Z4F1 713 aa23.04■■□□□ 1.28
SHKBP1-203ENST00000594298 GPC2Q8N158 579 aa23.04■■□□□ 1.28
SHKBP1-203ENST00000594298 PCNTO95613 3336 aa23.04■■□□□ 1.28
SHKBP1-203ENST00000594298 ITGBL1O95965 494 aaPredicted RBP23.03■■□□□ 1.28
SHKBP1-203ENST00000594298 EPHX2P34913 555 aa23.03■■□□□ 1.28
SHKBP1-203ENST00000594298 PNMA8AQ86V59 439 aaPredicted RBP23.03■■□□□ 1.28
SHKBP1-203ENST00000594298 JDP2Q8WYK2 163 aa23.03■■□□□ 1.28
SHKBP1-203ENST00000594298 CRAMP1Q96RY5 1269 aa23.03■■□□□ 1.28
SHKBP1-203ENST00000594298 NUP98P52948 1817 aa23.03■■□□□ 1.28
SHKBP1-203ENST00000594298 PDIA6Q15084 440 aa23.02■■□□□ 1.28
SHKBP1-203ENST00000594298 PARP10Q53GL7 1025 aa23.02■■□□□ 1.28
SHKBP1-203ENST00000594298 PPP1R42Q7Z4L9 355 aa23.02■■□□□ 1.28
SHKBP1-203ENST00000594298 TNS4Q8IZW8 715 aa23.02■■□□□ 1.28
SHKBP1-203ENST00000594298 RBM17Q96I25 401 aaKnown RBP23.02■■□□□ 1.28
SHKBP1-203ENST00000594298 MKRN1Q9UHC7 482 aaKnown RBP23.02■■□□□ 1.28
SHKBP1-203ENST00000594298 CNTNAP1P78357 1384 aa23.01■■□□□ 1.27
SHKBP1-203ENST00000594298 RIPK4P57078 832 aa23.01■■□□□ 1.27
SHKBP1-203ENST00000594298 EAPPQ56P03 285 aaPredicted RBP23.01■■□□□ 1.27
SHKBP1-203ENST00000594298 RNF123Q5XPI4 1314 aa23.01■■□□□ 1.27
SHKBP1-203ENST00000594298 ADAMTSL1Q8N6G6 1762 aa23.01■■□□□ 1.27
SHKBP1-203ENST00000594298 TMEM88BA6NKF7 163 aa22.99■■□□□ 1.27
SHKBP1-203ENST00000594298 PPEF1O14829 653 aaPredicted RBP22.99■■□□□ 1.27
SHKBP1-203ENST00000594298 LMOD3Q0VAK6 560 aa22.99■■□□□ 1.27
SHKBP1-203ENST00000594298 SLC10A5Q5PT55 438 aa22.99■■□□□ 1.27
SHKBP1-203ENST00000594298 COL4A5P29400 1685 aa22.98■■□□□ 1.27
SHKBP1-203ENST00000594298 TMPOP42166 694 aaKnown RBP22.98■■□□□ 1.27
SHKBP1-203ENST00000594298 EIF6P56537 245 aaKnown RBP22.98■■□□□ 1.27
SHKBP1-203ENST00000594298 C3orf67Q6ZVT6 689 aa22.98■■□□□ 1.27
SHKBP1-203ENST00000594298 NLRP3Q96P20 1036 aa22.98■■□□□ 1.27
SHKBP1-203ENST00000594298 EIF2S2P20042 333 aaKnown RBP22.97■■□□□ 1.27
SHKBP1-203ENST00000594298 UTP14AQ9BVJ6 771 aaKnown RBP22.97■■□□□ 1.27
SHKBP1-203ENST00000594298 CLEC11AQ9Y240 323 aa22.97■■□□□ 1.27
SHKBP1-203ENST00000594298 PROSER3Q2NL68 480 aa22.96■■□□□ 1.27
SHKBP1-203ENST00000594298 CNTROBQ8N137 903 aa22.96■■□□□ 1.27
SHKBP1-203ENST00000594298 LARGE2Q8N3Y3 721 aa22.95■■□□□ 1.26
SHKBP1-203ENST00000594298 VPS33BQ9H267 617 aa22.95■■□□□ 1.26
SHKBP1-203ENST00000594298 ANP32CO43423 234 aa22.94■■□□□ 1.26
SHKBP1-203ENST00000594298 HSP90AB3PQ58FF7 597 aa22.94■■□□□ 1.26
SHKBP1-203ENST00000594298 MAP1SQ66K74 1059 aaPredicted RBP22.94■■□□□ 1.26
SHKBP1-203ENST00000594298 ATP6V0A2Q9Y487 856 aa22.94■■□□□ 1.26
SHKBP1-203ENST00000594298 ANXA1P04083 346 aa22.93■■□□□ 1.26
SHKBP1-203ENST00000594298 LMOD1P29536 600 aaPredicted RBP22.93■■□□□ 1.26
SHKBP1-203ENST00000594298 SCNN1DP51172 638 aa22.93■■□□□ 1.26
SHKBP1-203ENST00000594298 WDR43Q15061 677 aaKnown RBP eCLIP22.93■■□□□ 1.26
SHKBP1-203ENST00000594298 SLC51AQ86UW1 340 aa22.93■■□□□ 1.26
SHKBP1-203ENST00000594298 TMX4Q9H1E5 349 aaPredicted RBP22.93■■□□□ 1.26
SHKBP1-203ENST00000594298 GJA3Q9Y6H8 435 aa22.93■■□□□ 1.26
SHKBP1-203ENST00000594298 VEGFBP49765 207 aa22.92■■□□□ 1.26
SHKBP1-203ENST00000594298 COPS6Q7L5N1 327 aa22.92■■□□□ 1.26
SHKBP1-203ENST00000594298 NIM1KQ8IY84 436 aa22.92■■□□□ 1.26
SHKBP1-203ENST00000594298 ABCC4O15439 1325 aa22.91■■□□□ 1.26
SHKBP1-203ENST00000594298 RASSF10A6NK89 507 aa22.91■■□□□ 1.26
SHKBP1-203ENST00000594298 CHL1O00533 1208 aa22.91■■□□□ 1.26
SHKBP1-203ENST00000594298 TCERG1O14776 1098 aaKnown RBP22.91■■□□□ 1.26
SHKBP1-203ENST00000594298 NLRP10Q86W26 655 aa22.91■■□□□ 1.26
SHKBP1-203ENST00000594298 RTFDC1Q9BY42 306 aaPredicted RBP22.91■■□□□ 1.26
SHKBP1-203ENST00000594298 DDX21Q9NR30 783 aaKnown RBP eCLIP22.91■■□□□ 1.26
SHKBP1-203ENST00000594298 PPIP5K2O43314 1243 aa22.9■■□□□ 1.26
SHKBP1-203ENST00000594298 BBOX1O75936 387 aa22.9■■□□□ 1.26
SHKBP1-203ENST00000594298 SUPT20HQ8NEM7 779 aa22.9■■□□□ 1.26
SHKBP1-203ENST00000594298 XAGE3Q8WTP9 111 aa22.9■■□□□ 1.26
SHKBP1-203ENST00000594298 LTBP1Q14766 1721 aa22.89■■□□□ 1.26
SHKBP1-203ENST00000594298 FOXN1O15353 648 aa22.89■■□□□ 1.25
SHKBP1-203ENST00000594298 EPS15P42566 896 aa22.89■■□□□ 1.25
SHKBP1-203ENST00000594298 TCIRG1Q13488 830 aa22.89■■□□□ 1.25
SHKBP1-203ENST00000594298 CAPN15O75808 1086 aa22.88■■□□□ 1.25
SHKBP1-203ENST00000594298 AIMP1Q12904 312 aaKnown RBP22.88■■□□□ 1.25
SHKBP1-203ENST00000594298 AOC3Q16853 763 aa22.88■■□□□ 1.25
SHKBP1-203ENST00000594298 USP50Q70EL3 339 aaPredicted RBP22.88■■□□□ 1.25
SHKBP1-203ENST00000594298 SP8Q8IXZ3 490 aa22.88■■□□□ 1.25
SHKBP1-203ENST00000594298 SH3TC1Q8TE82 1336 aa22.87■■□□□ 1.25
SHKBP1-203ENST00000594298 DEFB115Q30KQ5 88 aa22.87■■□□□ 1.25
SHKBP1-203ENST00000594298 NECTIN2Q92692 538 aa22.87■■□□□ 1.25
SHKBP1-203ENST00000594298 PRDM10Q9NQV6 1147 aa22.87■■□□□ 1.25
SHKBP1-203ENST00000594298 TRIM35Q9UPQ4 493 aa22.87■■□□□ 1.25
SHKBP1-203ENST00000594298 HOXB7P09629 217 aa22.86■■□□□ 1.25
SHKBP1-203ENST00000594298 HCLS1P14317 486 aaPredicted RBP22.86■■□□□ 1.25
SHKBP1-203ENST00000594298 KRT24Q2M2I5 525 aa22.86■■□□□ 1.25
SHKBP1-203ENST00000594298 CCDC146Q8IYE0 955 aa22.86■■□□□ 1.25
SHKBP1-203ENST00000594298 AIDAQ96BJ3 306 aa22.86■■□□□ 1.25
SHKBP1-203ENST00000594298 RUNDC1Q96C34 613 aa22.86■■□□□ 1.25
SHKBP1-203ENST00000594298 WBP1LQ9NX94 342 aa22.86■■□□□ 1.25
SHKBP1-203ENST00000594298 TRMT112Q9UI30 125 aaKnown RBP22.86■■□□□ 1.25
SHKBP1-203ENST00000594298 ZNRF3Q9ULT6 936 aa22.86■■□□□ 1.25
SHKBP1-203ENST00000594298 CTCFP49711 727 aaPredicted RBP22.85■■□□□ 1.25
SHKBP1-203ENST00000594298 NEUROD2Q15784 382 aa22.85■■□□□ 1.25
SHKBP1-203ENST00000594298 DPP8Q6V1X1 898 aaPredicted RBP22.85■■□□□ 1.25
SHKBP1-203ENST00000594298 GPRC5DQ9NZD1 345 aa22.85■■□□□ 1.25
SHKBP1-203ENST00000594298 CXCL9Q07325 125 aa22.84■■□□□ 1.25
SHKBP1-203ENST00000594298 GRAPQ13588 217 aa22.84■■□□□ 1.25
SHKBP1-203ENST00000594298 DDX46Q7L014 1031 aaKnown RBP22.84■■□□□ 1.25
SHKBP1-203ENST00000594298 GRAPLQ8TC17 118 aaPredicted RBP22.84■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms