RNA–Protein interactions for RNA: ENST00000585460.1

PRKAR1A-206, Transcript of protein kinase cAMP-dependent type I regulatory subunit alpha, human

TSL 2

Gene PRKAR1A, Length 680 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRKAR1A-206	ENST00000585460	PPP1R42	Q7Z4L9	355 aa		21.5	■■□□□ 1.03
PRKAR1A-206	ENST00000585460	SLC51A	Q86UW1	340 aa		21.5	■■□□□ 1.03
PRKAR1A-206	ENST00000585460	RBM17	Q96I25	401 aa	Known RBP	21.5	■■□□□ 1.03
PRKAR1A-206	ENST00000585460	HACL1	Q9UJ83	578 aa		21.5	■■□□□ 1.03
PRKAR1A-206	ENST00000585460	PASK	Q96RG2	1323 aa		21.5	■■□□□ 1.03
PRKAR1A-206	ENST00000585460	SNED1	Q8TER0	1413 aa		21.49	■■□□□ 1.03
PRKAR1A-206	ENST00000585460	HSPA1A	P0DMV8	641 aa	Known RBP	21.49	■■□□□ 1.03
PRKAR1A-206	ENST00000585460	HSPA1B	P0DMV9	641 aa	Known RBP	21.49	■■□□□ 1.03
PRKAR1A-206	ENST00000585460	PARP10	Q53GL7	1025 aa		21.49	■■□□□ 1.03
PRKAR1A-206	ENST00000585460	EAPP	Q56P03	285 aa	Predicted RBP	21.49	■■□□□ 1.03
PRKAR1A-206	ENST00000585460	JDP2	Q8WYK2	163 aa		21.49	■■□□□ 1.03
PRKAR1A-206	ENST00000585460	DICER1	Q9UPY3	1922 aa	Known RBP	21.49	■■□□□ 1.03
PRKAR1A-206	ENST00000585460	IBTK	Q9P2D0	1353 aa	Predicted RBP	21.48	■■□□□ 1.03
PRKAR1A-206	ENST00000585460	TCERG1	O14776	1098 aa	Known RBP	21.48	■■□□□ 1.03
PRKAR1A-206	ENST00000585460	EPHX2	P34913	555 aa		21.48	■■□□□ 1.03
PRKAR1A-206	ENST00000585460	GPC2	Q8N158	579 aa		21.48	■■□□□ 1.03
PRKAR1A-206	ENST00000585460	NLRP3	Q96P20	1036 aa		21.48	■■□□□ 1.03
PRKAR1A-206	ENST00000585460	UTP14A	Q9BVJ6	771 aa	Known RBP	21.48	■■□□□ 1.03
PRKAR1A-206	ENST00000585460	MKRN1	Q9UHC7	482 aa	Known RBP	21.48	■■□□□ 1.03
PRKAR1A-206	ENST00000585460	CHL1	O00533	1208 aa		21.47	■■□□□ 1.03
PRKAR1A-206	ENST00000585460	LMOD3	Q0VAK6	560 aa		21.47	■■□□□ 1.03
PRKAR1A-206	ENST00000585460	NEUROD2	Q15784	382 aa		21.47	■■□□□ 1.03
PRKAR1A-206	ENST00000585460	GRIPAP1	Q4V328	841 aa		21.47	■■□□□ 1.03
PRKAR1A-206	ENST00000585460	COPS6	Q7L5N1	327 aa		21.47	■■□□□ 1.03
PRKAR1A-206	ENST00000585460	CCDC146	Q8IYE0	955 aa		21.47	■■□□□ 1.03
PRKAR1A-206	ENST00000585460	NECTIN2	Q92692	538 aa		21.47	■■□□□ 1.03
PRKAR1A-206	ENST00000585460	CLEC11A	Q9Y240	323 aa		21.47	■■□□□ 1.03
PRKAR1A-206	ENST00000585460	KDM3B	Q7LBC6	1761 aa		21.46	■■□□□ 1.03
PRKAR1A-206	ENST00000585460	RNF123	Q5XPI4	1314 aa		21.46	■■□□□ 1.03
PRKAR1A-206	ENST00000585460	RIC1	Q4ADV7	1423 aa		21.46	■■□□□ 1.03
PRKAR1A-206	ENST00000585460	PCNT	O95613	3336 aa		21.45	■■□□□ 1.03
PRKAR1A-206	ENST00000585460	PPEF1	O14829	653 aa	Predicted RBP	21.45	■■□□□ 1.02
PRKAR1A-206	ENST00000585460	AIMP1	Q12904	312 aa	Known RBP	21.45	■■□□□ 1.02
PRKAR1A-206	ENST00000585460	PNMA8A	Q86V59	439 aa	Predicted RBP	21.45	■■□□□ 1.02
PRKAR1A-206	ENST00000585460	XAGE3	Q8WTP9	111 aa		21.45	■■□□□ 1.02
PRKAR1A-206	ENST00000585460	TRIM35	Q9UPQ4	493 aa		21.45	■■□□□ 1.02
PRKAR1A-206	ENST00000585460	ARFGEF2	Q9Y6D5	1785 aa		21.45	■■□□□ 1.02
PRKAR1A-206	ENST00000585460	DLG5	Q8TDM6	1919 aa		21.45	■■□□□ 1.02
PRKAR1A-206	ENST00000585460	EIF6	P56537	245 aa	Known RBP	21.44	■■□□□ 1.02
PRKAR1A-206	ENST00000585460	KRT24	Q2M2I5	525 aa		21.44	■■□□□ 1.02
PRKAR1A-206	ENST00000585460	LARGE2	Q8N3Y3	721 aa		21.44	■■□□□ 1.02
PRKAR1A-206	ENST00000585460	GJA3	Q9Y6H8	435 aa		21.44	■■□□□ 1.02
PRKAR1A-206	ENST00000585460	MAP1S	Q66K74	1059 aa	Predicted RBP	21.43	■■□□□ 1.02
PRKAR1A-206	ENST00000585460	NLRP10	Q86W26	655 aa		21.43	■■□□□ 1.02
PRKAR1A-206	ENST00000585460	CNTROB	Q8N137	903 aa		21.43	■■□□□ 1.02
PRKAR1A-206	ENST00000585460	ATP6V0A2	Q9Y487	856 aa		21.43	■■□□□ 1.02
PRKAR1A-206	ENST00000585460	MYBBP1A	Q9BQG0	1328 aa	Known RBP	21.43	■■□□□ 1.02
PRKAR1A-206	ENST00000585460	LAMB4	A4D0S4	1761 aa		21.42	■■□□□ 1.02
PRKAR1A-206	ENST00000585460	TMEM88B	A6NKF7	163 aa		21.42	■■□□□ 1.02
PRKAR1A-206	ENST00000585460	TCIRG1	Q13488	830 aa		21.42	■■□□□ 1.02
PRKAR1A-206	ENST00000585460	TNS4	Q8IZW8	715 aa		21.42	■■□□□ 1.02
PRKAR1A-206	ENST00000585460	RUNDC1	Q96C34	613 aa		21.42	■■□□□ 1.02
PRKAR1A-206	ENST00000585460	DDX21	Q9NR30	783 aa	Known RBP eCLIP	21.42	■■□□□ 1.02
PRKAR1A-206	ENST00000585460	ADAMTS8	Q9UP79	889 aa		21.42	■■□□□ 1.02
PRKAR1A-206	ENST00000585460	LAS1L	Q9Y4W2	734 aa	Known RBP	21.42	■■□□□ 1.02
PRKAR1A-206	ENST00000585460	CACNA1S	Q13698	1873 aa		21.41	■■□□□ 1.02
PRKAR1A-206	ENST00000585460	HCLS1	P14317	486 aa	Predicted RBP	21.41	■■□□□ 1.02
PRKAR1A-206	ENST00000585460	HSP90AB3P	Q58FF7	597 aa		21.41	■■□□□ 1.02
PRKAR1A-206	ENST00000585460	CNTNAP1	P78357	1384 aa		21.4	■■□□□ 1.02
PRKAR1A-206	ENST00000585460	BBOX1	O75936	387 aa		21.4	■■□□□ 1.02
PRKAR1A-206	ENST00000585460	EPS15	P42566	896 aa		21.4	■■□□□ 1.02
PRKAR1A-206	ENST00000585460	COL4A5	P29400	1685 aa		21.4	■■□□□ 1.02
PRKAR1A-206	ENST00000585460	NUP98	P52948	1817 aa		21.39	■■□□□ 1.02
PRKAR1A-206	ENST00000585460	ABCC4	O15439	1325 aa		21.39	■■□□□ 1.01
PRKAR1A-206	ENST00000585460	VEGFB	P49765	207 aa		21.39	■■□□□ 1.01
PRKAR1A-206	ENST00000585460	SCNN1D	P51172	638 aa		21.39	■■□□□ 1.01
PRKAR1A-206	ENST00000585460	TMX4	Q9H1E5	349 aa	Predicted RBP	21.39	■■□□□ 1.01
PRKAR1A-206	ENST00000585460	TRMT112	Q9UI30	125 aa	Known RBP	21.39	■■□□□ 1.01
PRKAR1A-206	ENST00000585460	PPIP5K2	O43314	1243 aa		21.38	■■□□□ 1.01
PRKAR1A-206	ENST00000585460	WDR43	Q15061	677 aa	Known RBP eCLIP	21.38	■■□□□ 1.01
PRKAR1A-206	ENST00000585460	AOC3	Q16853	763 aa		21.38	■■□□□ 1.01
PRKAR1A-206	ENST00000585460	SP8	Q8IXZ3	490 aa		21.38	■■□□□ 1.01
PRKAR1A-206	ENST00000585460	NIM1K	Q8IY84	436 aa		21.38	■■□□□ 1.01
PRKAR1A-206	ENST00000585460	RTFDC1	Q9BY42	306 aa	Predicted RBP	21.38	■■□□□ 1.01
PRKAR1A-206	ENST00000585460	VPS33B	Q9H267	617 aa		21.38	■■□□□ 1.01
PRKAR1A-206	ENST00000585460	CHPF2	Q9P2E5	772 aa		21.38	■■□□□ 1.01
PRKAR1A-206	ENST00000585460	LMOD1	P29536	600 aa	Predicted RBP	21.37	■■□□□ 1.01
PRKAR1A-206	ENST00000585460	SCN4A	P35499	1836 aa		21.36	■■□□□ 1.01
PRKAR1A-206	ENST00000585460	ZNF428	Q96B54	188 aa		21.36	■■□□□ 1.01
PRKAR1A-206	ENST00000585460	SH3TC1	Q8TE82	1336 aa		21.35	■■□□□ 1.01
PRKAR1A-206	ENST00000585460	CAPN15	O75808	1086 aa		21.35	■■□□□ 1.01
PRKAR1A-206	ENST00000585460	CXCL9	Q07325	125 aa		21.35	■■□□□ 1.01
PRKAR1A-206	ENST00000585460	HDGFL1	Q5TGJ6	251 aa		21.35	■■□□□ 1.01
PRKAR1A-206	ENST00000585460	ANKRD13D	Q6ZTN6	518 aa		21.35	■■□□□ 1.01
PRKAR1A-206	ENST00000585460	DDX46	Q7L014	1031 aa	Known RBP	21.35	■■□□□ 1.01
PRKAR1A-206	ENST00000585460	MPND	Q8N594	471 aa		21.35	■■□□□ 1.01
PRKAR1A-206	ENST00000585460	SUPT20H	Q8NEM7	779 aa		21.35	■■□□□ 1.01
PRKAR1A-206	ENST00000585460	PLBD2	Q8NHP8	589 aa		21.35	■■□□□ 1.01
PRKAR1A-206	ENST00000585460	ZNRF3	Q9ULT6	936 aa		21.35	■■□□□ 1.01
PRKAR1A-206	ENST00000585460	FOXN1	O15353	648 aa		21.34	■■□□□ 1.01
PRKAR1A-206	ENST00000585460	FMR1	Q06787	632 aa	Known RBP eCLIP	21.34	■■□□□ 1.01	8e-7	■■□□□ 13.2
PRKAR1A-206	ENST00000585460	DEFB115	Q30KQ5	88 aa		21.34	■■□□□ 1.01
PRKAR1A-206	ENST00000585460	DPP8	Q6V1X1	898 aa	Predicted RBP	21.34	■■□□□ 1.01
PRKAR1A-206	ENST00000585460	CFAP44	Q96MT7	982 aa		21.34	■■□□□ 1.01
PRKAR1A-206	ENST00000585460	HOXB7	P09629	217 aa		21.33	■■□□□ 1.01
PRKAR1A-206	ENST00000585460	GRAP	Q13588	217 aa		21.33	■■□□□ 1.01
PRKAR1A-206	ENST00000585460	USP50	Q70EL3	339 aa	Predicted RBP	21.33	■■□□□ 1.01
PRKAR1A-206	ENST00000585460	GRAPL	Q8TC17	118 aa	Predicted RBP	21.33	■■□□□ 1.01
PRKAR1A-206	ENST00000585460	ISCA1	Q9BUE6	129 aa		21.33	■■□□□ 1.01
PRKAR1A-206	ENST00000585460	DBF4	Q9UBU7	674 aa	Predicted RBP	21.33	■■□□□ 1.01

Retrieved 100 of 20,778 RNA–protein pairs in 65.9 ms