RNA–Protein interactions for RNA: ENST00000573903.1

CCDC40-210, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 561 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-210ENST00000573903 UBN2Q6ZU65 1347 aa15.99■□□□□ 0.15
CCDC40-210ENST00000573903 HSPA1AP0DMV8 641 aaKnown RBP15.99■□□□□ 0.15
CCDC40-210ENST00000573903 HSPA1BP0DMV9 641 aaKnown RBP15.99■□□□□ 0.15
CCDC40-210ENST00000573903 PARP10Q53GL7 1025 aa15.99■□□□□ 0.15
CCDC40-210ENST00000573903 EIF2S2P20042 333 aaKnown RBP15.98■□□□□ 0.15
CCDC40-210ENST00000573903 EIF6P56537 245 aaKnown RBP15.98■□□□□ 0.15
CCDC40-210ENST00000573903 COL13A1Q5TAT6 717 aaPredicted RBP15.98■□□□□ 0.15
CCDC40-210ENST00000573903 SUSD4Q5VX71 490 aa15.98■□□□□ 0.15
CCDC40-210ENST00000573903 PNMA8AQ86V59 439 aaPredicted RBP15.98■□□□□ 0.15
CCDC40-210ENST00000573903 BABAM1Q9NWV8 329 aa15.98■□□□□ 0.15
CCDC40-210ENST00000573903 CLEC11AQ9Y240 323 aa15.98■□□□□ 0.15
CCDC40-210ENST00000573903 FZD9O00144 591 aa15.97■□□□□ 0.15
CCDC40-210ENST00000573903 PPEF1O14829 653 aaPredicted RBP15.97■□□□□ 0.15
CCDC40-210ENST00000573903 NTSR2O95665 410 aa15.97■□□□□ 0.15
CCDC40-210ENST00000573903 HOXA10P31260 410 aaPredicted RBP15.97■□□□□ 0.15
CCDC40-210ENST00000573903 EPHX2P34913 555 aa15.97■□□□□ 0.15
CCDC40-210ENST00000573903 ZNF34Q8IZ26 560 aa15.97■□□□□ 0.15
CCDC40-210ENST00000573903 GPC2Q8N158 579 aa15.97■□□□□ 0.15
CCDC40-210ENST00000573903 NLRP3Q96P20 1036 aa15.97■□□□□ 0.15
CCDC40-210ENST00000573903 MKRN1Q9UHC7 482 aaKnown RBP15.97■□□□□ 0.15
CCDC40-210ENST00000573903 ANKRD36CQ5JPF3 1778 aa15.97■□□□□ 0.15
CCDC40-210ENST00000573903 RNF123Q5XPI4 1314 aa15.96■□□□□ 0.15
CCDC40-210ENST00000573903 LMOD1P29536 600 aaPredicted RBP15.96■□□□□ 0.15
CCDC40-210ENST00000573903 TNS4Q8IZW8 715 aa15.96■□□□□ 0.15
CCDC40-210ENST00000573903 CRAMP1Q96RY5 1269 aa15.96■□□□□ 0.15
CCDC40-210ENST00000573903 SNED1Q8TER0 1413 aa15.95■□□□□ 0.14
CCDC40-210ENST00000573903 TMPOP42166 694 aaKnown RBP15.95■□□□□ 0.14
CCDC40-210ENST00000573903 HSP90AB3PQ58FF7 597 aa15.95■□□□□ 0.14
CCDC40-210ENST00000573903 LARGE2Q8N3Y3 721 aa15.95■□□□□ 0.14
CCDC40-210ENST00000573903 UTP14AQ9BVJ6 771 aaKnown RBP15.95■□□□□ 0.14
CCDC40-210ENST00000573903 GJA3Q9Y6H8 435 aa15.95■□□□□ 0.14
CCDC40-210ENST00000573903 PASKQ96RG2 1323 aa15.94■□□□□ 0.14
CCDC40-210ENST00000573903 MYBBP1AQ9BQG0 1328 aaKnown RBP15.94■□□□□ 0.14
CCDC40-210ENST00000573903 TMEM88BA6NKF7 163 aa15.94■□□□□ 0.14
CCDC40-210ENST00000573903 TCERG1O14776 1098 aaKnown RBP15.94■□□□□ 0.14
CCDC40-210ENST00000573903 WDR43Q15061 677 aaKnown RBP eCLIP15.94■□□□□ 0.14
CCDC40-210ENST00000573903 CNTNAP1P78357 1384 aa15.94■□□□□ 0.14
CCDC40-210ENST00000573903 ADAMTSL1Q8N6G6 1762 aa15.94■□□□□ 0.14
CCDC40-210ENST00000573903 NEUROD2Q15784 382 aa15.93■□□□□ 0.14
CCDC40-210ENST00000573903 NIM1KQ8IY84 436 aa15.93■□□□□ 0.14
CCDC40-210ENST00000573903 ANXA1P04083 346 aa15.92■□□□□ 0.14
CCDC40-210ENST00000573903 AIMP1Q12904 312 aaKnown RBP15.92■□□□□ 0.14
CCDC40-210ENST00000573903 PDIA6Q15084 440 aa15.92■□□□□ 0.14
CCDC40-210ENST00000573903 NECTIN2Q92692 538 aa15.92■□□□□ 0.14
CCDC40-210ENST00000573903 LAMB2P55268 1798 aa15.91■□□□□ 0.14
CCDC40-210ENST00000573903 PPIP5K2O43314 1243 aa15.91■□□□□ 0.14
CCDC40-210ENST00000573903 PROSER3Q2NL68 480 aa15.91■□□□□ 0.14
CCDC40-210ENST00000573903 COPS6Q7L5N1 327 aa15.91■□□□□ 0.14
CCDC40-210ENST00000573903 LRP10Q7Z4F1 713 aa15.91■□□□□ 0.14
CCDC40-210ENST00000573903 CCDC146Q8IYE0 955 aa15.91■□□□□ 0.14
CCDC40-210ENST00000573903 CNTROBQ8N137 903 aa15.91■□□□□ 0.14
CCDC40-210ENST00000573903 SUPT20HQ8NEM7 779 aa15.91■□□□□ 0.14
CCDC40-210ENST00000573903 LAS1LQ9Y4W2 734 aaKnown RBP15.91■□□□□ 0.14
CCDC40-210ENST00000573903 COL4A5P29400 1685 aa15.9■□□□□ 0.14
CCDC40-210ENST00000573903 CAPN15O75808 1086 aa15.9■□□□□ 0.14
CCDC40-210ENST00000573903 ITGBL1O95965 494 aaPredicted RBP15.9■□□□□ 0.14
CCDC40-210ENST00000573903 DDX10Q13206 875 aaKnown RBP15.9■□□□□ 0.14
CCDC40-210ENST00000573903 SLC10A5Q5PT55 438 aa15.9■□□□□ 0.14
CCDC40-210ENST00000573903 MAP1SQ66K74 1059 aaPredicted RBP15.9■□□□□ 0.14
CCDC40-210ENST00000573903 C3orf67Q6ZVT6 689 aa15.9■□□□□ 0.14
CCDC40-210ENST00000573903 XAGE3Q8WTP9 111 aa15.9■□□□□ 0.14
CCDC40-210ENST00000573903 AIDAQ96BJ3 306 aa15.9■□□□□ 0.14
CCDC40-210ENST00000573903 RUNDC1Q96C34 613 aa15.9■□□□□ 0.14
CCDC40-210ENST00000573903 VPS33BQ9H267 617 aa15.9■□□□□ 0.14
CCDC40-210ENST00000573903 DDX21Q9NR30 783 aaKnown RBP eCLIP15.9■□□□□ 0.14
CCDC40-210ENST00000573903 ATP6V0A2Q9Y487 856 aa15.9■□□□□ 0.14
CCDC40-210ENST00000573903 ABCC4O15439 1325 aa15.9■□□□□ 0.14
CCDC40-210ENST00000573903 DDX46Q7L014 1031 aaKnown RBP15.89■□□□□ 0.13
CCDC40-210ENST00000573903 NLRP10Q86W26 655 aa15.89■□□□□ 0.13
CCDC40-210ENST00000573903 TRMT112Q9UI30 125 aaKnown RBP15.89■□□□□ 0.13
CCDC40-210ENST00000573903 SH3TC1Q8TE82 1336 aa15.89■□□□□ 0.13
CCDC40-210ENST00000573903 BBOX1O75936 387 aa15.88■□□□□ 0.13
CCDC40-210ENST00000573903 TCIRG1Q13488 830 aa15.88■□□□□ 0.13
CCDC40-210ENST00000573903 AOC3Q16853 763 aa15.88■□□□□ 0.13
CCDC40-210ENST00000573903 HDGFL1Q5TGJ6 251 aa15.88■□□□□ 0.13
CCDC40-210ENST00000573903 DPP8Q6V1X1 898 aaPredicted RBP15.88■□□□□ 0.13
CCDC40-210ENST00000573903 LTBP1Q14766 1721 aa15.88■□□□□ 0.13
CCDC40-210ENST00000573903 PCNTO95613 3336 aa15.88■□□□□ 0.13
CCDC40-210ENST00000573903 CHL1O00533 1208 aa15.87■□□□□ 0.13
CCDC40-210ENST00000573903 HOXB7P09629 217 aa15.87■□□□□ 0.13
CCDC40-210ENST00000573903 SCNN1DP51172 638 aa15.87■□□□□ 0.13
CCDC40-210ENST00000573903 USP50Q70EL3 339 aaPredicted RBP15.87■□□□□ 0.13
CCDC40-210ENST00000573903 ABT1Q9ULW3 272 aaKnown RBP15.87■□□□□ 0.13
CCDC40-210ENST00000573903 HCLS1P14317 486 aaPredicted RBP15.86■□□□□ 0.13
CCDC40-210ENST00000573903 VEGFBP49765 207 aa15.86■□□□□ 0.13
CCDC40-210ENST00000573903 DEFB115Q30KQ5 88 aa15.86■□□□□ 0.13
CCDC40-210ENST00000573903 SP8Q8IXZ3 490 aa15.86■□□□□ 0.13
CCDC40-210ENST00000573903 MPNDQ8N594 471 aa15.86■□□□□ 0.13
CCDC40-210ENST00000573903 CHPF2Q9P2E5 772 aa15.86■□□□□ 0.13
CCDC40-210ENST00000573903 RASSF10A6NK89 507 aa15.85■□□□□ 0.13
CCDC40-210ENST00000573903 EPS15P42566 896 aa15.85■□□□□ 0.13
CCDC40-210ENST00000573903 GRAPQ13588 217 aa15.85■□□□□ 0.13
CCDC40-210ENST00000573903 KRT24Q2M2I5 525 aa15.85■□□□□ 0.13
CCDC40-210ENST00000573903 TMC4Q7Z404 712 aa15.85■□□□□ 0.13
CCDC40-210ENST00000573903 SLC51AQ86UW1 340 aa15.85■□□□□ 0.13
CCDC40-210ENST00000573903 PLBD2Q8NHP8 589 aa15.85■□□□□ 0.13
CCDC40-210ENST00000573903 GRAPLQ8TC17 118 aaPredicted RBP15.85■□□□□ 0.13
CCDC40-210ENST00000573903 RTFDC1Q9BY42 306 aaPredicted RBP15.85■□□□□ 0.13
CCDC40-210ENST00000573903 DBF4Q9UBU7 674 aaPredicted RBP15.85■□□□□ 0.13
CCDC40-210ENST00000573903 ZNRF3Q9ULT6 936 aa15.85■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms