RNA–Protein interactions for RNA: ENST00000571190.1

CIITA-206, Transcript of class II major histocompatibility complex transactivator, humanhuman

Gene CIITA, Length 479 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-206ENST00000571190 PASKQ96RG2 1323 aa23.09■■□□□ 1.29
CIITA-206ENST00000571190 CREBZFQ9NS37 354 aa23.09■■□□□ 1.29
CIITA-206ENST00000571190 DICER1Q9UPY3 1922 aaKnown RBP23.08■■□□□ 1.29
CIITA-206ENST00000571190 CC2D2BQ6DHV5 1058 aa23.08■■□□□ 1.29
CIITA-206ENST00000571190 RPGRQ92834 1020 aaKnown RBP23.08■■□□□ 1.29
CIITA-206ENST00000571190 CRAMP1Q96RY5 1269 aa23.08■■□□□ 1.29
CIITA-206ENST00000571190 ITGBL1O95965 494 aaPredicted RBP23.07■■□□□ 1.28
CIITA-206ENST00000571190 HSPA1AP0DMV8 641 aaKnown RBP23.07■■□□□ 1.28
CIITA-206ENST00000571190 HSPA1BP0DMV9 641 aaKnown RBP23.07■■□□□ 1.28
CIITA-206ENST00000571190 DDX10Q13206 875 aaKnown RBP23.07■■□□□ 1.28
CIITA-206ENST00000571190 HACL1Q9UJ83 578 aa23.07■■□□□ 1.28
CIITA-206ENST00000571190 DLG5Q8TDM6 1919 aa23.07■■□□□ 1.28
CIITA-206ENST00000571190 PARP10Q53GL7 1025 aa23.06■■□□□ 1.28
CIITA-206ENST00000571190 SLC10A5Q5PT55 438 aa23.06■■□□□ 1.28
CIITA-206ENST00000571190 PPP1R42Q7Z4L9 355 aa23.06■■□□□ 1.28
CIITA-206ENST00000571190 CCDC146Q8IYE0 955 aa23.06■■□□□ 1.28
CIITA-206ENST00000571190 RBM17Q96I25 401 aaKnown RBP23.06■■□□□ 1.28
CIITA-206ENST00000571190 COL4A5P29400 1685 aa23.06■■□□□ 1.28
CIITA-206ENST00000571190 RNF123Q5XPI4 1314 aa23.06■■□□□ 1.28
CIITA-206ENST00000571190 EPHX2P34913 555 aa23.05■■□□□ 1.28
CIITA-206ENST00000571190 KRT24Q2M2I5 525 aa23.05■■□□□ 1.28
CIITA-206ENST00000571190 EAPPQ56P03 285 aaPredicted RBP23.05■■□□□ 1.28
CIITA-206ENST00000571190 MKRN1Q9UHC7 482 aaKnown RBP23.05■■□□□ 1.28
CIITA-206ENST00000571190 MYBBP1AQ9BQG0 1328 aaKnown RBP23.05■■□□□ 1.28
CIITA-206ENST00000571190 CHL1O00533 1208 aa23.04■■□□□ 1.28
CIITA-206ENST00000571190 LMOD3Q0VAK6 560 aa23.04■■□□□ 1.28
CIITA-206ENST00000571190 COPS6Q7L5N1 327 aa23.04■■□□□ 1.28
CIITA-206ENST00000571190 GPC2Q8N158 579 aa23.04■■□□□ 1.28
CIITA-206ENST00000571190 NECTIN2Q92692 538 aa23.04■■□□□ 1.28
CIITA-206ENST00000571190 UTP14AQ9BVJ6 771 aaKnown RBP23.04■■□□□ 1.28
CIITA-206ENST00000571190 TRIM35Q9UPQ4 493 aa23.04■■□□□ 1.28
CIITA-206ENST00000571190 CACNA1SQ13698 1873 aa23.03■■□□□ 1.28
CIITA-206ENST00000571190 TCERG1O14776 1098 aaKnown RBP23.03■■□□□ 1.28
CIITA-206ENST00000571190 PPEF1O14829 653 aaPredicted RBP23.03■■□□□ 1.28
CIITA-206ENST00000571190 NEUROD2Q15784 382 aa23.03■■□□□ 1.28
CIITA-206ENST00000571190 XAGE3Q8WTP9 111 aa23.03■■□□□ 1.28
CIITA-206ENST00000571190 JDP2Q8WYK2 163 aa23.03■■□□□ 1.28
CIITA-206ENST00000571190 NLRP3Q96P20 1036 aa23.02■■□□□ 1.28
CIITA-206ENST00000571190 AIMP1Q12904 312 aaKnown RBP23.01■■□□□ 1.27
CIITA-206ENST00000571190 GRIPAP1Q4V328 841 aa23.01■■□□□ 1.27
CIITA-206ENST00000571190 NLRP10Q86W26 655 aa23.01■■□□□ 1.27
CIITA-206ENST00000571190 PNMA8AQ86V59 439 aaPredicted RBP23■■□□□ 1.27
CIITA-206ENST00000571190 DDX21Q9NR30 783 aaKnown RBP eCLIP23■■□□□ 1.27
CIITA-206ENST00000571190 CLEC11AQ9Y240 323 aa23■■□□□ 1.27
CIITA-206ENST00000571190 CNTNAP1P78357 1384 aa23■■□□□ 1.27
CIITA-206ENST00000571190 EIF6P56537 245 aaKnown RBP22.99■■□□□ 1.27
CIITA-206ENST00000571190 TCIRG1Q13488 830 aa22.99■■□□□ 1.27
CIITA-206ENST00000571190 MAP1SQ66K74 1059 aaPredicted RBP22.99■■□□□ 1.27
CIITA-206ENST00000571190 LARGE2Q8N3Y3 721 aa22.99■■□□□ 1.27
CIITA-206ENST00000571190 RUNDC1Q96C34 613 aa22.99■■□□□ 1.27
CIITA-206ENST00000571190 ADAMTS8Q9UP79 889 aa22.99■■□□□ 1.27
CIITA-206ENST00000571190 ATP6V0A2Q9Y487 856 aa22.99■■□□□ 1.27
CIITA-206ENST00000571190 GJA3Q9Y6H8 435 aa22.99■■□□□ 1.27
CIITA-206ENST00000571190 ABCC4O15439 1325 aa22.99■■□□□ 1.27
CIITA-206ENST00000571190 NUP98P52948 1817 aa22.98■■□□□ 1.27
CIITA-206ENST00000571190 TMEM88BA6NKF7 163 aa22.98■■□□□ 1.27
CIITA-206ENST00000571190 HCLS1P14317 486 aaPredicted RBP22.98■■□□□ 1.27
CIITA-206ENST00000571190 SCNN1DP51172 638 aa22.98■■□□□ 1.27
CIITA-206ENST00000571190 CNTROBQ8N137 903 aa22.98■■□□□ 1.27
CIITA-206ENST00000571190 EPS15P42566 896 aa22.97■■□□□ 1.27
CIITA-206ENST00000571190 HSP90AB3PQ58FF7 597 aa22.97■■□□□ 1.27
CIITA-206ENST00000571190 ADAMTSL1Q8N6G6 1762 aa22.96■■□□□ 1.27
CIITA-206ENST00000571190 PCNTO95613 3336 aa22.96■■□□□ 1.27
CIITA-206ENST00000571190 TNS4Q8IZW8 715 aa22.96■■□□□ 1.27
CIITA-206ENST00000571190 RTFDC1Q9BY42 306 aaPredicted RBP22.96■■□□□ 1.27
CIITA-206ENST00000571190 CHPF2Q9P2E5 772 aa22.96■■□□□ 1.27
CIITA-206ENST00000571190 LAS1LQ9Y4W2 734 aaKnown RBP22.96■■□□□ 1.27
CIITA-206ENST00000571190 SCN4AP35499 1836 aa22.96■■□□□ 1.27
CIITA-206ENST00000571190 VEGFBP49765 207 aa22.95■■□□□ 1.26
CIITA-206ENST00000571190 AOC3Q16853 763 aa22.95■■□□□ 1.26
CIITA-206ENST00000571190 TRMT112Q9UI30 125 aaKnown RBP22.95■■□□□ 1.26
CIITA-206ENST00000571190 PPIP5K2O43314 1243 aa22.94■■□□□ 1.26
CIITA-206ENST00000571190 BBOX1O75936 387 aa22.94■■□□□ 1.26
CIITA-206ENST00000571190 WDR43Q15061 677 aaKnown RBP eCLIP22.94■■□□□ 1.26
CIITA-206ENST00000571190 NIM1KQ8IY84 436 aa22.94■■□□□ 1.26
CIITA-206ENST00000571190 ZNF428Q96B54 188 aa22.94■■□□□ 1.26
CIITA-206ENST00000571190 SP8Q8IXZ3 490 aa22.93■■□□□ 1.26
CIITA-206ENST00000571190 VPS33BQ9H267 617 aa22.93■■□□□ 1.26
CIITA-206ENST00000571190 SH3TC1Q8TE82 1336 aa22.92■■□□□ 1.26
CIITA-206ENST00000571190 FMR1Q06787 632 aaKnown RBP eCLIP22.92■■□□□ 1.26
CIITA-206ENST00000571190 HDGFL1Q5TGJ6 251 aa22.92■■□□□ 1.26
CIITA-206ENST00000571190 LTBP1Q14766 1721 aa22.91■■□□□ 1.26
CIITA-206ENST00000571190 HOXB7P09629 217 aa22.91■■□□□ 1.26
CIITA-206ENST00000571190 LMOD1P29536 600 aaPredicted RBP22.91■■□□□ 1.26
CIITA-206ENST00000571190 CXCL9Q07325 125 aa22.91■■□□□ 1.26
CIITA-206ENST00000571190 PLBD2Q8NHP8 589 aa22.91■■□□□ 1.26
CIITA-206ENST00000571190 CFAP44Q96MT7 982 aa22.91■■□□□ 1.26
CIITA-206ENST00000571190 ISCA1Q9BUE6 129 aa22.91■■□□□ 1.26
CIITA-206ENST00000571190 RASSF10A6NK89 507 aa22.9■■□□□ 1.26
CIITA-206ENST00000571190 FOXN1O15353 648 aa22.9■■□□□ 1.26
CIITA-206ENST00000571190 GRAPQ13588 217 aa22.9■■□□□ 1.26
CIITA-206ENST00000571190 ANKRD13DQ6ZTN6 518 aa22.9■■□□□ 1.26
CIITA-206ENST00000571190 GRAPLQ8TC17 118 aaPredicted RBP22.9■■□□□ 1.26
CIITA-206ENST00000571190 PRKRIP1Q9H875 184 aaPredicted RBP22.9■■□□□ 1.26
CIITA-206ENST00000571190 ZNF853P0CG23 659 aa22.89■■□□□ 1.25
CIITA-206ENST00000571190 DPP8Q6V1X1 898 aaPredicted RBP22.89■■□□□ 1.25
CIITA-206ENST00000571190 USP50Q70EL3 339 aaPredicted RBP22.89■■□□□ 1.25
CIITA-206ENST00000571190 DDX46Q7L014 1031 aaKnown RBP22.89■■□□□ 1.25
CIITA-206ENST00000571190 MPNDQ8N594 471 aa22.89■■□□□ 1.25
CIITA-206ENST00000571190 SUPT20HQ8NEM7 779 aa22.89■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms