RNA–Protein interactions for RNA: ENST00000568422.6

CLN3-231, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,168 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-231ENST00000568422 PDIA6Q15084 440 aa22.08■■□□□ 1.13
CLN3-231ENST00000568422 LRP10Q7Z4F1 713 aa22.08■■□□□ 1.13
CLN3-231ENST00000568422 CRAMP1Q96RY5 1269 aa22.08■■□□□ 1.13
CLN3-231ENST00000568422 ANKRD36CQ5JPF3 1778 aa22.07■■□□□ 1.12
CLN3-231ENST00000568422 SNED1Q8TER0 1413 aa22.07■■□□□ 1.12
CLN3-231ENST00000568422 RBM17Q96I25 401 aaKnown RBP22.07■■□□□ 1.12
CLN3-231ENST00000568422 FZD9O00144 591 aa22.06■■□□□ 1.12
CLN3-231ENST00000568422 LDHDQ86WU2 507 aa22.06■■□□□ 1.12
CLN3-231ENST00000568422 JDP2Q8WYK2 163 aa22.06■■□□□ 1.12
CLN3-231ENST00000568422 TAF1DQ9H5J8 278 aaPredicted RBP22.06■■□□□ 1.12
CLN3-231ENST00000568422 RNF123Q5XPI4 1314 aa22.06■■□□□ 1.12
CLN3-231ENST00000568422 ZNF541Q9H0D2 1346 aa22.06■■□□□ 1.12
CLN3-231ENST00000568422 WDR43Q15061 677 aaKnown RBP eCLIP22.05■■□□□ 1.12
CLN3-231ENST00000568422 HSP90AB3PQ58FF7 597 aa22.05■■□□□ 1.12
CLN3-231ENST00000568422 RUNDC1Q96C34 613 aa22.05■■□□□ 1.12
CLN3-231ENST00000568422 NLRP3Q96P20 1036 aa22.05■■□□□ 1.12
CLN3-231ENST00000568422 CREBZFQ9NS37 354 aa22.05■■□□□ 1.12
CLN3-231ENST00000568422 SLC10A5Q5PT55 438 aa22.04■■□□□ 1.12
CLN3-231ENST00000568422 GPC2Q8N158 579 aa22.04■■□□□ 1.12
CLN3-231ENST00000568422 UTP14AQ9BVJ6 771 aaKnown RBP22.04■■□□□ 1.12
CLN3-231ENST00000568422 HACL1Q9UJ83 578 aa22.04■■□□□ 1.12
CLN3-231ENST00000568422 CHL1O00533 1208 aa22.03■■□□□ 1.12
CLN3-231ENST00000568422 POTEIP0CG38 1075 aa22.03■■□□□ 1.12
CLN3-231ENST00000568422 POTEJP0CG39 1038 aa22.03■■□□□ 1.12
CLN3-231ENST00000568422 NEUROD2Q15784 382 aa22.03■■□□□ 1.12
CLN3-231ENST00000568422 PROSER3Q2NL68 480 aa22.03■■□□□ 1.12
CLN3-231ENST00000568422 TMX4Q9H1E5 349 aaPredicted RBP22.03■■□□□ 1.12
CLN3-231ENST00000568422 PNMA8AQ86V59 439 aaPredicted RBP22.02■■□□□ 1.12
CLN3-231ENST00000568422 CCDC146Q8IYE0 955 aa22.02■■□□□ 1.12
CLN3-231ENST00000568422 DDX21Q9NR30 783 aaKnown RBP eCLIP22.02■■□□□ 1.12
CLN3-231ENST00000568422 PPEF1O14829 653 aaPredicted RBP22.01■■□□□ 1.11
CLN3-231ENST00000568422 COPS6Q7L5N1 327 aa22.01■■□□□ 1.11
CLN3-231ENST00000568422 TRIM35Q9UPQ4 493 aa22.01■■□□□ 1.11
CLN3-231ENST00000568422 ADAMTSL1Q8N6G6 1762 aa22.01■■□□□ 1.11
CLN3-231ENST00000568422 ANXA1P04083 346 aa22■■□□□ 1.11
CLN3-231ENST00000568422 EPHX2P34913 555 aa22■■□□□ 1.11
CLN3-231ENST00000568422 EIF6P56537 245 aaKnown RBP22■■□□□ 1.11
CLN3-231ENST00000568422 LAMB2P55268 1798 aa21.99■■□□□ 1.11
CLN3-231ENST00000568422 HOXB7P09629 217 aa21.99■■□□□ 1.11
CLN3-231ENST00000568422 EAPPQ56P03 285 aaPredicted RBP21.99■■□□□ 1.11
CLN3-231ENST00000568422 XAGE3Q8WTP9 111 aa21.99■■□□□ 1.11
CLN3-231ENST00000568422 VPS33BQ9H267 617 aa21.99■■□□□ 1.11
CLN3-231ENST00000568422 ADAMTS8Q9UP79 889 aa21.99■■□□□ 1.11
CLN3-231ENST00000568422 PASKQ96RG2 1323 aa21.99■■□□□ 1.11
CLN3-231ENST00000568422 AIMP1Q12904 312 aaKnown RBP21.98■■□□□ 1.11
CLN3-231ENST00000568422 TCIRG1Q13488 830 aa21.98■■□□□ 1.11
CLN3-231ENST00000568422 C3orf67Q6ZVT6 689 aa21.98■■□□□ 1.11
CLN3-231ENST00000568422 LARGE2Q8N3Y3 721 aa21.98■■□□□ 1.11
CLN3-231ENST00000568422 NECTIN2Q92692 538 aa21.98■■□□□ 1.11
CLN3-231ENST00000568422 ATP6V0A2Q9Y487 856 aa21.98■■□□□ 1.11
CLN3-231ENST00000568422 LAS1LQ9Y4W2 734 aaKnown RBP21.98■■□□□ 1.11
CLN3-231ENST00000568422 NLRP10Q86W26 655 aa21.97■■□□□ 1.11
CLN3-231ENST00000568422 CLEC11AQ9Y240 323 aa21.97■■□□□ 1.11
CLN3-231ENST00000568422 COL4A5P29400 1685 aa21.96■■□□□ 1.11
CLN3-231ENST00000568422 BBOX1O75936 387 aa21.96■■□□□ 1.11
CLN3-231ENST00000568422 ITGBL1O95965 494 aaPredicted RBP21.96■■□□□ 1.11
CLN3-231ENST00000568422 TCERG1O14776 1098 aaKnown RBP21.95■■□□□ 1.1
CLN3-231ENST00000568422 LMOD1P29536 600 aaPredicted RBP21.95■■□□□ 1.1
CLN3-231ENST00000568422 SUPT20HQ8NEM7 779 aa21.95■■□□□ 1.1
CLN3-231ENST00000568422 CFAP44Q96MT7 982 aa21.95■■□□□ 1.1
CLN3-231ENST00000568422 CHPF2Q9P2E5 772 aa21.95■■□□□ 1.1
CLN3-231ENST00000568422 DBF4Q9UBU7 674 aaPredicted RBP21.95■■□□□ 1.1
CLN3-231ENST00000568422 TRMT112Q9UI30 125 aaKnown RBP21.95■■□□□ 1.1
CLN3-231ENST00000568422 ABCC4O15439 1325 aa21.95■■□□□ 1.1
CLN3-231ENST00000568422 SH3TC1Q8TE82 1336 aa21.95■■□□□ 1.1
CLN3-231ENST00000568422 TMEM88BA6NKF7 163 aa21.94■■□□□ 1.1
CLN3-231ENST00000568422 HSPA1AP0DMV8 641 aaKnown RBP21.94■■□□□ 1.1
CLN3-231ENST00000568422 HSPA1BP0DMV9 641 aaKnown RBP21.94■■□□□ 1.1
CLN3-231ENST00000568422 KRT24Q2M2I5 525 aa21.94■■□□□ 1.1
CLN3-231ENST00000568422 COL13A1Q5TAT6 717 aaPredicted RBP21.94■■□□□ 1.1
CLN3-231ENST00000568422 HDGFL1Q5TGJ6 251 aa21.94■■□□□ 1.1
CLN3-231ENST00000568422 NIM1KQ8IY84 436 aa21.94■■□□□ 1.1
CLN3-231ENST00000568422 PLBD2Q8NHP8 589 aa21.94■■□□□ 1.1
CLN3-231ENST00000568422 PRKRIP1Q9H875 184 aaPredicted RBP21.94■■□□□ 1.1
CLN3-231ENST00000568422 GJA3Q9Y6H8 435 aa21.94■■□□□ 1.1
CLN3-231ENST00000568422 DDX46Q7L014 1031 aaKnown RBP21.93■■□□□ 1.1
CLN3-231ENST00000568422 SP8Q8IXZ3 490 aa21.93■■□□□ 1.1
CLN3-231ENST00000568422 RTFDC1Q9BY42 306 aaPredicted RBP21.93■■□□□ 1.1
CLN3-231ENST00000568422 MKRN1Q9UHC7 482 aaKnown RBP21.93■■□□□ 1.1
CLN3-231ENST00000568422 CNTNAP1P78357 1384 aa21.92■■□□□ 1.1
CLN3-231ENST00000568422 PPIP5K2O43314 1243 aa21.92■■□□□ 1.1
CLN3-231ENST00000568422 ANKRD13DQ6ZTN6 518 aa21.92■■□□□ 1.1
CLN3-231ENST00000568422 TMC4Q7Z404 712 aa21.92■■□□□ 1.1
CLN3-231ENST00000568422 CNTROBQ8N137 903 aa21.92■■□□□ 1.1
CLN3-231ENST00000568422 HYPKQ9NX55 129 aa21.92■■□□□ 1.1
CLN3-231ENST00000568422 HCLS1P14317 486 aaPredicted RBP21.91■■□□□ 1.1
CLN3-231ENST00000568422 LTBP1Q14766 1721 aa21.9■■□□□ 1.1
CLN3-231ENST00000568422 DDX60Q8IY21 1712 aaKnown RBP21.9■■□□□ 1.1
CLN3-231ENST00000568422 CALD1Q05682 793 aaKnown RBP21.9■■□□□ 1.1
CLN3-231ENST00000568422 GRAPQ13588 217 aa21.9■■□□□ 1.1
CLN3-231ENST00000568422 DPP8Q6V1X1 898 aaPredicted RBP21.9■■□□□ 1.1
CLN3-231ENST00000568422 GRAPLQ8TC17 118 aaPredicted RBP21.9■■□□□ 1.1
CLN3-231ENST00000568422 SCNN1DP51172 638 aa21.89■■□□□ 1.09
CLN3-231ENST00000568422 AOC3Q16853 763 aa21.89■■□□□ 1.09
CLN3-231ENST00000568422 MAP1SQ66K74 1059 aaPredicted RBP21.89■■□□□ 1.09
CLN3-231ENST00000568422 USP50Q70EL3 339 aaPredicted RBP21.89■■□□□ 1.09
CLN3-231ENST00000568422 MPNDQ8N594 471 aa21.89■■□□□ 1.09
CLN3-231ENST00000568422 ZNRF3Q9ULT6 936 aa21.89■■□□□ 1.09
CLN3-231ENST00000568422 TAF1P21675 1872 aa21.88■■□□□ 1.09
CLN3-231ENST00000568422 DUSP27Q5VZP5 1158 aa21.88■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms