RNA–Protein interactions for RNA: ENST00000557455.1

CCDC88C-213, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 811 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-213ENST00000557455 IARSP41252 1262 aaKnown RBP14.5□□□□□ -0.09
CCDC88C-213ENST00000557455 WDR43Q15061 677 aaKnown RBP eCLIP14.5□□□□□ -0.09
CCDC88C-213ENST00000557455 PARP10Q53GL7 1025 aa14.5□□□□□ -0.09
CCDC88C-213ENST00000557455 CC2D2BQ6DHV5 1058 aa14.5□□□□□ -0.09
CCDC88C-213ENST00000557455 LRP10Q7Z4F1 713 aa14.5□□□□□ -0.09
CCDC88C-213ENST00000557455 L3MBTL3Q96JM7 780 aaPredicted RBP14.5□□□□□ -0.09
CCDC88C-213ENST00000557455 PSMD1Q99460 953 aa14.5□□□□□ -0.09
CCDC88C-213ENST00000557455 ZNF541Q9H0D2 1346 aa14.49□□□□□ -0.09
CCDC88C-213ENST00000557455 POTEIP0CG38 1075 aa14.49□□□□□ -0.09
CCDC88C-213ENST00000557455 POTEJP0CG39 1038 aa14.49□□□□□ -0.09
CCDC88C-213ENST00000557455 PROSER3Q2NL68 480 aa14.49□□□□□ -0.09
CCDC88C-213ENST00000557455 NECTIN2Q92692 538 aa14.49□□□□□ -0.09
CCDC88C-213ENST00000557455 RUNDC1Q96C34 613 aa14.49□□□□□ -0.09
CCDC88C-213ENST00000557455 LAS1LQ9Y4W2 734 aaKnown RBP14.49□□□□□ -0.09
CCDC88C-213ENST00000557455 LAMB2P55268 1798 aa14.48□□□□□ -0.09
CCDC88C-213ENST00000557455 FZD9O00144 591 aa14.48□□□□□ -0.09
CCDC88C-213ENST00000557455 JDP2Q8WYK2 163 aa14.48□□□□□ -0.09
CCDC88C-213ENST00000557455 NLRP3Q96P20 1036 aa14.48□□□□□ -0.09
CCDC88C-213ENST00000557455 CRAMP1Q96RY5 1269 aa14.48□□□□□ -0.09
CCDC88C-213ENST00000557455 UTP14AQ9BVJ6 771 aaKnown RBP14.48□□□□□ -0.09
CCDC88C-213ENST00000557455 TAF1DQ9H5J8 278 aaPredicted RBP14.48□□□□□ -0.09
CCDC88C-213ENST00000557455 HACL1Q9UJ83 578 aa14.48□□□□□ -0.09
CCDC88C-213ENST00000557455 SNED1Q8TER0 1413 aa14.48□□□□□ -0.09
CCDC88C-213ENST00000557455 CHL1O00533 1208 aa14.47□□□□□ -0.09
CCDC88C-213ENST00000557455 TCERG1O14776 1098 aaKnown RBP14.47□□□□□ -0.09
CCDC88C-213ENST00000557455 PPEF1O14829 653 aaPredicted RBP14.47□□□□□ -0.09
CCDC88C-213ENST00000557455 AIMP1Q12904 312 aaKnown RBP14.47□□□□□ -0.09
CCDC88C-213ENST00000557455 GRIPAP1Q4V328 841 aa14.47□□□□□ -0.09
CCDC88C-213ENST00000557455 HSP90AB3PQ58FF7 597 aa14.47□□□□□ -0.09
CCDC88C-213ENST00000557455 COPS6Q7L5N1 327 aa14.47□□□□□ -0.09
CCDC88C-213ENST00000557455 LDHDQ86WU2 507 aa14.47□□□□□ -0.09
CCDC88C-213ENST00000557455 TRIM35Q9UPQ4 493 aa14.47□□□□□ -0.09
CCDC88C-213ENST00000557455 EAPPQ56P03 285 aaPredicted RBP14.46□□□□□ -0.09
CCDC88C-213ENST00000557455 SLC10A5Q5PT55 438 aa14.46□□□□□ -0.09
CCDC88C-213ENST00000557455 C3orf67Q6ZVT6 689 aa14.46□□□□□ -0.09
CCDC88C-213ENST00000557455 GPC2Q8N158 579 aa14.46□□□□□ -0.09
CCDC88C-213ENST00000557455 XAGE3Q8WTP9 111 aa14.46□□□□□ -0.09
CCDC88C-213ENST00000557455 TMX4Q9H1E5 349 aaPredicted RBP14.46□□□□□ -0.09
CCDC88C-213ENST00000557455 DDX21Q9NR30 783 aaKnown RBP eCLIP14.46□□□□□ -0.09
CCDC88C-213ENST00000557455 ADAMTS8Q9UP79 889 aa14.46□□□□□ -0.09
CCDC88C-213ENST00000557455 RNF123Q5XPI4 1314 aa14.45□□□□□ -0.1
CCDC88C-213ENST00000557455 EPHX2P34913 555 aa14.45□□□□□ -0.1
CCDC88C-213ENST00000557455 EIF6P56537 245 aaKnown RBP14.45□□□□□ -0.1
CCDC88C-213ENST00000557455 KRT24Q2M2I5 525 aa14.45□□□□□ -0.1
CCDC88C-213ENST00000557455 CREBZFQ9NS37 354 aa14.45□□□□□ -0.1
CCDC88C-213ENST00000557455 CLEC11AQ9Y240 323 aa14.45□□□□□ -0.1
CCDC88C-213ENST00000557455 TCIRG1Q13488 830 aa14.44□□□□□ -0.1
CCDC88C-213ENST00000557455 PNMA8AQ86V59 439 aaPredicted RBP14.44□□□□□ -0.1
CCDC88C-213ENST00000557455 NLRP10Q86W26 655 aa14.44□□□□□ -0.1
CCDC88C-213ENST00000557455 LARGE2Q8N3Y3 721 aa14.44□□□□□ -0.1
CCDC88C-213ENST00000557455 CHPF2Q9P2E5 772 aa14.44□□□□□ -0.1
CCDC88C-213ENST00000557455 ADAMTSL1Q8N6G6 1762 aa14.44□□□□□ -0.1
CCDC88C-213ENST00000557455 COL4A5P29400 1685 aa14.43□□□□□ -0.1
CCDC88C-213ENST00000557455 HOXB7P09629 217 aa14.43□□□□□ -0.1
CCDC88C-213ENST00000557455 HDGFL1Q5TGJ6 251 aa14.43□□□□□ -0.1
CCDC88C-213ENST00000557455 PRKRIP1Q9H875 184 aaPredicted RBP14.43□□□□□ -0.1
CCDC88C-213ENST00000557455 TRMT112Q9UI30 125 aaKnown RBP14.43□□□□□ -0.1
CCDC88C-213ENST00000557455 ATP6V0A2Q9Y487 856 aa14.43□□□□□ -0.1
CCDC88C-213ENST00000557455 GJA3Q9Y6H8 435 aa14.43□□□□□ -0.1
CCDC88C-213ENST00000557455 ABCC4O15439 1325 aa14.42□□□□□ -0.1
CCDC88C-213ENST00000557455 PASKQ96RG2 1323 aa14.42□□□□□ -0.1
CCDC88C-213ENST00000557455 TAF1P21675 1872 aa14.42□□□□□ -0.1
CCDC88C-213ENST00000557455 HCLS1P14317 486 aaPredicted RBP14.42□□□□□ -0.1
CCDC88C-213ENST00000557455 SLC51AQ86UW1 340 aa14.42□□□□□ -0.1
CCDC88C-213ENST00000557455 CFAP44Q96MT7 982 aa14.42□□□□□ -0.1
CCDC88C-213ENST00000557455 MKRN1Q9UHC7 482 aaKnown RBP14.42□□□□□ -0.1
CCDC88C-213ENST00000557455 SH3TC1Q8TE82 1336 aa14.41□□□□□ -0.1
CCDC88C-213ENST00000557455 PPIP5K2O43314 1243 aa14.41□□□□□ -0.1
CCDC88C-213ENST00000557455 BBOX1O75936 387 aa14.41□□□□□ -0.1
CCDC88C-213ENST00000557455 ITGBL1O95965 494 aaPredicted RBP14.41□□□□□ -0.1
CCDC88C-213ENST00000557455 HSPA1AP0DMV8 641 aaKnown RBP14.41□□□□□ -0.1
CCDC88C-213ENST00000557455 HSPA1BP0DMV9 641 aaKnown RBP14.41□□□□□ -0.1
CCDC88C-213ENST00000557455 LMOD1P29536 600 aaPredicted RBP14.41□□□□□ -0.1
CCDC88C-213ENST00000557455 COL13A1Q5TAT6 717 aaPredicted RBP14.41□□□□□ -0.1
CCDC88C-213ENST00000557455 NIM1KQ8IY84 436 aa14.41□□□□□ -0.1
CCDC88C-213ENST00000557455 DBF4Q9UBU7 674 aaPredicted RBP14.41□□□□□ -0.1
CCDC88C-213ENST00000557455 DDX60Q8IY21 1712 aaKnown RBP14.41□□□□□ -0.1
CCDC88C-213ENST00000557455 AOC3Q16853 763 aa14.4□□□□□ -0.1
CCDC88C-213ENST00000557455 ANKRD13DQ6ZTN6 518 aa14.4□□□□□ -0.1
CCDC88C-213ENST00000557455 DDX46Q7L014 1031 aaKnown RBP14.4□□□□□ -0.1
CCDC88C-213ENST00000557455 SP8Q8IXZ3 490 aa14.4□□□□□ -0.1
CCDC88C-213ENST00000557455 SUPT20HQ8NEM7 779 aa14.4□□□□□ -0.1
CCDC88C-213ENST00000557455 PLBD2Q8NHP8 589 aa14.4□□□□□ -0.1
CCDC88C-213ENST00000557455 VPS33BQ9H267 617 aa14.4□□□□□ -0.1
CCDC88C-213ENST00000557455 LTBP1Q14766 1721 aa14.4□□□□□ -0.1
CCDC88C-213ENST00000557455 TMEM88BA6NKF7 163 aa14.39□□□□□ -0.11
CCDC88C-213ENST00000557455 DUSP27Q5VZP5 1158 aa14.39□□□□□ -0.11
CCDC88C-213ENST00000557455 MAP1SQ66K74 1059 aaPredicted RBP14.39□□□□□ -0.11
CCDC88C-213ENST00000557455 DPP8Q6V1X1 898 aaPredicted RBP14.39□□□□□ -0.11
CCDC88C-213ENST00000557455 CNTROBQ8N137 903 aa14.39□□□□□ -0.11
CCDC88C-213ENST00000557455 MBIPQ9NS73 344 aa14.39□□□□□ -0.11
CCDC88C-213ENST00000557455 HYPKQ9NX55 129 aa14.39□□□□□ -0.11
CCDC88C-213ENST00000557455 CNTNAP1P78357 1384 aa14.38□□□□□ -0.11
CCDC88C-213ENST00000557455 APAF1O14727 1248 aa14.38□□□□□ -0.11
CCDC88C-213ENST00000557455 GRAPQ13588 217 aa14.38□□□□□ -0.11
CCDC88C-213ENST00000557455 MPNDQ8N594 471 aa14.38□□□□□ -0.11
CCDC88C-213ENST00000557455 GRAPLQ8TC17 118 aaPredicted RBP14.38□□□□□ -0.11
CCDC88C-213ENST00000557455 ZNF428Q96B54 188 aa14.38□□□□□ -0.11
CCDC88C-213ENST00000557455 RTFDC1Q9BY42 306 aaPredicted RBP14.38□□□□□ -0.11
CCDC88C-213ENST00000557455 ATP5J2-PTCD1G3V325 749 aa14.37□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms