RNA–Protein interactions for RNA: ENST00000554439.5

PRPF39-207, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 5

Gene PRPF39, Length 2,982 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-207ENST00000554439 RRP7AQ9Y3A4 280 aaKnown RBP3.25□□□□□ -1.89
PRPF39-207ENST00000554439 GPSM3Q9Y4H4 160 aa3.25□□□□□ -1.89
PRPF39-207ENST00000554439 GRIN2AQ12879 1464 aa3.25□□□□□ -1.89
PRPF39-207ENST00000554439 ABCC10Q5T3U5 1492 aa3.25□□□□□ -1.89
PRPF39-207ENST00000554439 PHF20L1A8MW92 1017 aa3.24□□□□□ -1.89
PRPF39-207ENST00000554439 SLFNL1Q499Z3 407 aa3.24□□□□□ -1.89
PRPF39-207ENST00000554439 LARP1Q6PKG0 1096 aaKnown RBP3.24□□□□□ -1.89
PRPF39-207ENST00000554439 KRTAP19-1Q8IUB9 90 aa3.24□□□□□ -1.89
PRPF39-207ENST00000554439 SCUBE3Q8IX30 993 aa3.24□□□□□ -1.89
PRPF39-207ENST00000554439 NAP1L5Q96NT1 182 aaPredicted RBP3.24□□□□□ -1.89
PRPF39-207ENST00000554439 SPOCK3Q9BQ16 436 aa3.24□□□□□ -1.89
PRPF39-207ENST00000554439 ATP10BO94823 1461 aa3.24□□□□□ -1.89
PRPF39-207ENST00000554439 MAGI1Q96QZ7 1491 aaPredicted RBP3.24□□□□□ -1.89
PRPF39-207ENST00000554439 SHANK2Q9UPX8 1470 aa3.24□□□□□ -1.89
PRPF39-207ENST00000554439 ANKRD33BA6NCL7 494 aa3.24□□□□□ -1.89
PRPF39-207ENST00000554439 LZTS3O60299 673 aaPredicted RBP3.24□□□□□ -1.89
PRPF39-207ENST00000554439 JUNDP17535 347 aa3.24□□□□□ -1.89
PRPF39-207ENST00000554439 TNNT2P45379 298 aaPredicted RBP3.24□□□□□ -1.89
PRPF39-207ENST00000554439 TAGLNQ01995 201 aaKnown RBP3.24□□□□□ -1.89
PRPF39-207ENST00000554439 BECN1Q14457 450 aa3.24□□□□□ -1.89
PRPF39-207ENST00000554439 PDXDC2PQ6P474 469 aa3.24□□□□□ -1.89
PRPF39-207ENST00000554439 TAS1R3Q7RTX0 852 aa3.24□□□□□ -1.89
PRPF39-207ENST00000554439 SIX5Q8N196 739 aa3.24□□□□□ -1.89
PRPF39-207ENST00000554439 CHMP7Q8WUX9 453 aaPredicted RBP3.24□□□□□ -1.89
PRPF39-207ENST00000554439 ZNF594Q96JF6 807 aaPredicted RBP3.24□□□□□ -1.89
PRPF39-207ENST00000554439 CENPJQ9HC77 1338 aaPredicted RBP3.24□□□□□ -1.89
PRPF39-207ENST00000554439 FBXO33Q7Z6M2 555 aa3.24□□□□□ -1.89
PRPF39-207ENST00000554439 RNF135Q8IUD6 432 aa3.24□□□□□ -1.89
PRPF39-207ENST00000554439 GIPC2Q8TF65 315 aa3.24□□□□□ -1.89
PRPF39-207ENST00000554439 TBC1D32Q96NH3 1257 aa3.24□□□□□ -1.89
PRPF39-207ENST00000554439 EVA1BQ9NVM1 165 aa3.24□□□□□ -1.89
PRPF39-207ENST00000554439 SAMD9LQ8IVG5 1584 aa3.23□□□□□ -1.89
PRPF39-207ENST00000554439 FSD2A1L4K1 749 aa3.23□□□□□ -1.89
PRPF39-207ENST00000554439 GOLGA6L3A6NEY3 463 aa3.23□□□□□ -1.89
PRPF39-207ENST00000554439 MCM4P33991 863 aa3.23□□□□□ -1.89
PRPF39-207ENST00000554439 L1TD1Q5T7N2 865 aaKnown RBP3.23□□□□□ -1.89
PRPF39-207ENST00000554439 ALYREFQ86V81 257 aaKnown RBP3.23□□□□□ -1.89
PRPF39-207ENST00000554439 CCDC85AQ96PX6 553 aaPredicted RBP3.23□□□□□ -1.89
PRPF39-207ENST00000554439 CARD14Q9BXL6 1004 aa3.23□□□□□ -1.89
PRPF39-207ENST00000554439 CGNL1Q0VF96 1302 aa3.23□□□□□ -1.89
PRPF39-207ENST00000554439 MAPK8IP3Q9UPT6 1336 aa3.23□□□□□ -1.89
PRPF39-207ENST00000554439 ASXL1Q8IXJ9 1541 aa3.23□□□□□ -1.89
PRPF39-207ENST00000554439 PRMT3O60678 531 aa3.23□□□□□ -1.89
PRPF39-207ENST00000554439 RARSP54136 660 aaKnown RBP3.23□□□□□ -1.89
PRPF39-207ENST00000554439 PTK2Q05397 1052 aa3.23□□□□□ -1.89
PRPF39-207ENST00000554439 PDE3AQ14432 1141 aa3.23□□□□□ -1.89
PRPF39-207ENST00000554439 EML3Q32P44 896 aa3.23□□□□□ -1.89
PRPF39-207ENST00000554439 MAP7D1Q3KQU3 841 aa3.23□□□□□ -1.89
PRPF39-207ENST00000554439 FAM160A2Q8N612 972 aaPredicted RBP3.23□□□□□ -1.89
PRPF39-207ENST00000554439 ADAM32Q8TC27 787 aa3.23□□□□□ -1.89
PRPF39-207ENST00000554439 DNAAF2Q9NVR5 837 aaKnown RBP3.23□□□□□ -1.89
PRPF39-207ENST00000554439 CXXC1Q9P0U4 656 aaPredicted RBP3.23□□□□□ -1.89
PRPF39-207ENST00000554439 CLASP1Q7Z460 1538 aa3.22□□□□□ -1.89
PRPF39-207ENST00000554439 SYCP2Q9BX26 1530 aa3.22□□□□□ -1.89
PRPF39-207ENST00000554439 LAMC1P11047 1609 aa3.22□□□□□ -1.89
PRPF39-207ENST00000554439 CDC42BPBQ9Y5S2 1711 aa3.22□□□□□ -1.89
PRPF39-207ENST00000554439 MYOM1P52179 1685 aa3.22□□□□□ -1.89
PRPF39-207ENST00000554439 ABCA8O94911 1581 aa3.22□□□□□ -1.89
PRPF39-207ENST00000554439 SYNJ2O15056 1496 aa3.22□□□□□ -1.89
PRPF39-207ENST00000554439 CCDC141Q6ZP82 1450 aa3.22□□□□□ -1.89
PRPF39-207ENST00000554439 MRC2Q9UBG0 1479 aa3.22□□□□□ -1.89
PRPF39-207ENST00000554439 CCNYL3P0C7X3 344 aa3.22□□□□□ -1.89
PRPF39-207ENST00000554439 VAMP1P23763 118 aa3.22□□□□□ -1.89
PRPF39-207ENST00000554439 PLA2G2CQ5R387 149 aa3.22□□□□□ -1.89
PRPF39-207ENST00000554439 SH3BP5LQ7L8J4 393 aa3.22□□□□□ -1.89
PRPF39-207ENST00000554439 LARGE2Q8N3Y3 721 aa3.22□□□□□ -1.89
PRPF39-207ENST00000554439 PKNOX2Q96KN3 472 aa3.22□□□□□ -1.89
PRPF39-207ENST00000554439 PNNQ9H307 717 aaKnown RBP3.22□□□□□ -1.89
PRPF39-207ENST00000554439 EGFL7Q9UHF1 273 aa3.22□□□□□ -1.89
PRPF39-207ENST00000554439 PCDHB9Q9Y5E1 797 aa3.22□□□□□ -1.89
PRPF39-207ENST00000554439 PIK3C2GO75747 1445 aa3.22□□□□□ -1.89
PRPF39-207ENST00000554439 DXOO77932 396 aaKnown RBP3.22□□□□□ -1.89
PRPF39-207ENST00000554439 ARHGEF15O94989 841 aa3.22□□□□□ -1.89
PRPF39-207ENST00000554439 FMNL1O95466 1100 aaPredicted RBP3.22□□□□□ -1.89
PRPF39-207ENST00000554439 TCF3P15923 654 aa3.22□□□□□ -1.89
PRPF39-207ENST00000554439 CTHP32929 405 aa3.22□□□□□ -1.89
PRPF39-207ENST00000554439 MMP16P51512 607 aa3.22□□□□□ -1.89
PRPF39-207ENST00000554439 MCCD1P59942 119 aaPredicted RBP3.22□□□□□ -1.89
PRPF39-207ENST00000554439 ARHGAP4P98171 946 aa3.22□□□□□ -1.89
PRPF39-207ENST00000554439 ZNF211Q13398 564 aaPredicted RBP3.22□□□□□ -1.89
PRPF39-207ENST00000554439 MSS51Q4VC12 460 aa3.22□□□□□ -1.89
PRPF39-207ENST00000554439 CAPN12Q6ZSI9 719 aa3.22□□□□□ -1.89
PRPF39-207ENST00000554439 GALNT6Q8NCL4 622 aa3.22□□□□□ -1.89
PRPF39-207ENST00000554439 GPKOWQ92917 476 aaPredicted RBP eCLIP3.22□□□□□ -1.893e-6■■■■□ 23.6
PRPF39-207ENST00000554439 UPF2Q9HAU5 1272 aaKnown RBP3.22□□□□□ -1.89
PRPF39-207ENST00000554439 PRDM9Q9NQV7 894 aa3.22□□□□□ -1.89
PRPF39-207ENST00000554439 RNF17Q9BXT8 1623 aaKnown RBP3.22□□□□□ -1.89
PRPF39-207ENST00000554439 ARHGEF5Q12774 1597 aa3.22□□□□□ -1.89
PRPF39-207ENST00000554439 EIF2AK4Q9P2K8 1649 aaKnown RBP3.21□□□□□ -1.89
PRPF39-207ENST00000554439 ICMTO60725 284 aa3.21□□□□□ -1.89
PRPF39-207ENST00000554439 RECKO95980 971 aa3.21□□□□□ -1.89
PRPF39-207ENST00000554439 PLA2G4EQ3MJ16 856 aa3.21□□□□□ -1.89
PRPF39-207ENST00000554439 SH3RF1Q7Z6J0 888 aa3.21□□□□□ -1.89
PRPF39-207ENST00000554439 GAS2L3Q86XJ1 694 aa3.21□□□□□ -1.89
PRPF39-207ENST00000554439 PRIMPOLQ96LW4 560 aa3.21□□□□□ -1.89
PRPF39-207ENST00000554439 C22orf23Q9BZE7 217 aa3.21□□□□□ -1.89
PRPF39-207ENST00000554439 ANO2Q9NQ90 1003 aa3.21□□□□□ -1.89
PRPF39-207ENST00000554439 BIN2Q9UBW5 565 aaPredicted RBP3.21□□□□□ -1.89
PRPF39-207ENST00000554439 PCDHGA11Q9Y5H2 935 aa3.21□□□□□ -1.89
PRPF39-207ENST00000554439 ABCC2Q92887 1545 aa3.21□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms