RNA–Protein interactions for RNA: ENST00000550611.1

LIMA1-206, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-206ENST00000550611 SYNJ2O15056 1496 aa6.66□□□□□ -1.34
LIMA1-206ENST00000550611 A0A0A0MRY4 1105 aa6.65□□□□□ -1.34
LIMA1-206ENST00000550611 BACH1O14867 736 aa6.65□□□□□ -1.34
LIMA1-206ENST00000550611 RAC1P63000 192 aa6.65□□□□□ -1.34
LIMA1-206ENST00000550611 IRF5Q13568 498 aa6.65□□□□□ -1.34
LIMA1-206ENST00000550611 MCTP1Q6DN14 999 aa6.65□□□□□ -1.34
LIMA1-206ENST00000550611 ZDHHC1Q8WTX9 485 aa6.65□□□□□ -1.34
LIMA1-206ENST00000550611 L3MBTL2Q969R5 705 aa6.65□□□□□ -1.34
LIMA1-206ENST00000550611 TBC1D2BQ9UPU7 963 aa6.65□□□□□ -1.34
LIMA1-206ENST00000550611 RAD54L2Q9Y4B4 1467 aa6.65□□□□□ -1.35
LIMA1-206ENST00000550611 KCNQ4P56696 695 aa6.64□□□□□ -1.35
LIMA1-206ENST00000550611 TP53INP1Q96A56 240 aa6.64□□□□□ -1.35
LIMA1-206ENST00000550611 NEUROD4Q9HD90 331 aa6.64□□□□□ -1.35
LIMA1-206ENST00000550611 PRM3Q9NNZ6 103 aa6.64□□□□□ -1.35
LIMA1-206ENST00000550611 RNF112Q9ULX5 631 aa6.64□□□□□ -1.35
LIMA1-206ENST00000550611 PCDHGA11Q9Y5H2 935 aa6.64□□□□□ -1.35
LIMA1-206ENST00000550611 SNAPC4Q5SXM2 1469 aa6.64□□□□□ -1.35
LIMA1-206ENST00000550611 NOS2P35228 1153 aa6.63□□□□□ -1.35
LIMA1-206ENST00000550611 TARBP1Q13395 1621 aaKnown RBP6.63□□□□□ -1.35
LIMA1-206ENST00000550611 IL27Q8NEV9 243 aa6.63□□□□□ -1.35
LIMA1-206ENST00000550611 DNMBPQ6XZF7 1577 aa6.62□□□□□ -1.35
LIMA1-206ENST00000550611 ADGRL1O94910 1474 aa6.62□□□□□ -1.35
LIMA1-206ENST00000550611 POLA1P09884 1462 aaPredicted RBP6.61□□□□□ -1.35
LIMA1-206ENST00000550611 COL17A1Q9UMD9 1497 aaPredicted RBP6.61□□□□□ -1.35
LIMA1-206ENST00000550611 EPHA4P54764 986 aa6.61□□□□□ -1.35
LIMA1-206ENST00000550611 SHISA2Q6UWI4 295 aa6.61□□□□□ -1.35
LIMA1-206ENST00000550611 SYNJ1O43426 1573 aa6.61□□□□□ -1.35
LIMA1-206ENST00000550611 SOGA1O94964 1423 aa6.6□□□□□ -1.35
LIMA1-206ENST00000550611 BRD7Q9NPI1 651 aa6.6□□□□□ -1.35
LIMA1-206ENST00000550611 PAX4O43316 350 aa6.59□□□□□ -1.35
LIMA1-206ENST00000550611 C1orf53Q5VUE5 145 aa6.59□□□□□ -1.35
LIMA1-206ENST00000550611 RAB44Q7Z6P3 723 aaPredicted RBP6.59□□□□□ -1.35
LIMA1-206ENST00000550611 SLC9A9Q8IVB4 645 aa6.59□□□□□ -1.35
LIMA1-206ENST00000550611 FMR1NBQ8N0W7 255 aaPredicted RBP6.59□□□□□ -1.35
LIMA1-206ENST00000550611 EFCC1Q9HA90 598 aa6.59□□□□□ -1.35
LIMA1-206ENST00000550611 ZNF358Q9NW07 568 aa6.59□□□□□ -1.35
LIMA1-206ENST00000550611 ANKIB1Q9P2G1 1089 aa6.59□□□□□ -1.35
LIMA1-206ENST00000550611 USP21Q9UK80 565 aa6.59□□□□□ -1.35
LIMA1-206ENST00000550611 ZNF232Q9UNY5 417 aa6.59□□□□□ -1.35
LIMA1-206ENST00000550611 KCNH4Q9UQ05 1017 aa6.59□□□□□ -1.35
LIMA1-206ENST00000550611 KDM6BO15054 1643 aa6.58□□□□□ -1.36
LIMA1-206ENST00000550611 SERTM1A2A2V5 107 aa6.58□□□□□ -1.36
LIMA1-206ENST00000550611 SOX11P35716 441 aa6.58□□□□□ -1.36
LIMA1-206ENST00000550611 TXKP42681 527 aa6.58□□□□□ -1.36
LIMA1-206ENST00000550611 VAC14Q08AM6 782 aa6.58□□□□□ -1.36
LIMA1-206ENST00000550611 SLC51AQ86UW1 340 aa6.58□□□□□ -1.36
LIMA1-206ENST00000550611 RHPN1Q8TCX5 695 aa6.58□□□□□ -1.36
LIMA1-206ENST00000550611 CEP63Q96MT8 703 aa6.58□□□□□ -1.36
LIMA1-206ENST00000550611 FMNL2Q96PY5 1086 aa6.58□□□□□ -1.36
LIMA1-206ENST00000550611 JPH1Q9HDC5 661 aaPredicted RBP6.58□□□□□ -1.36
LIMA1-206ENST00000550611 SLC6A14Q9UN76 642 aa6.58□□□□□ -1.36
LIMA1-206ENST00000550611 TSPOAP1O95153 1857 aa6.58□□□□□ -1.36
LIMA1-206ENST00000550611 PRDM2Q13029 1718 aa6.57□□□□□ -1.36
LIMA1-206ENST00000550611 LZTS3O60299 673 aaPredicted RBP6.57□□□□□ -1.36
LIMA1-206ENST00000550611 AFF1P51825 1210 aaKnown RBP6.57□□□□□ -1.36
LIMA1-206ENST00000550611 HIRAP54198 1017 aaPredicted RBP6.57□□□□□ -1.36
LIMA1-206ENST00000550611 TYRO3Q06418 890 aa6.57□□□□□ -1.36
LIMA1-206ENST00000550611 WASHC4Q2M389 1173 aa6.57□□□□□ -1.36
LIMA1-206ENST00000550611 POTEAQ6S8J7 498 aa6.57□□□□□ -1.36
LIMA1-206ENST00000550611 DTWD1Q8N5C7 304 aa6.57□□□□□ -1.36
LIMA1-206ENST00000550611 ABCC10Q5T3U5 1492 aa6.57□□□□□ -1.36
LIMA1-206ENST00000550611 SEMA3FQ13275 785 aa6.56□□□□□ -1.36
LIMA1-206ENST00000550611 EML3Q32P44 896 aa6.56□□□□□ -1.36
LIMA1-206ENST00000550611 SERBP1Q8NC51 408 aaKnown RBP eCLIP6.56□□□□□ -1.36
LIMA1-206ENST00000550611 WFDC12Q8WWY7 111 aa6.56□□□□□ -1.36
LIMA1-206ENST00000550611 NOD1Q9Y239 953 aa6.56□□□□□ -1.36
LIMA1-206ENST00000550611 ARID1BQ8NFD5 2236 aaPredicted RBP6.56□□□□□ -1.36
LIMA1-206ENST00000550611 MAGI1Q96QZ7 1491 aaPredicted RBP6.55□□□□□ -1.36
LIMA1-206ENST00000550611 YBX3P16989 372 aaKnown RBP eCLIP6.55□□□□□ -1.36
LIMA1-206ENST00000550611 GTF2IP78347 998 aa6.55□□□□□ -1.36
LIMA1-206ENST00000550611 NEUROD2Q15784 382 aa6.55□□□□□ -1.36
LIMA1-206ENST00000550611 NUDT8Q8WV74 236 aa6.55□□□□□ -1.36
LIMA1-206ENST00000550611 BHMTQ93088 406 aa6.55□□□□□ -1.36
LIMA1-206ENST00000550611 UBE2OQ9C0C9 1292 aaKnown RBP6.55□□□□□ -1.36
LIMA1-206ENST00000550611 GRIN2BQ13224 1484 aa6.54□□□□□ -1.36
LIMA1-206ENST00000550611 SFI1A8K8P3 1242 aa6.54□□□□□ -1.36
LIMA1-206ENST00000550611 SH3PXD2AQ5TCZ1 1133 aa6.54□□□□□ -1.36
LIMA1-206ENST00000550611 PSAPL1Q6NUJ1 521 aa6.54□□□□□ -1.36
LIMA1-206ENST00000550611 FBXO11Q86XK2 927 aa6.54□□□□□ -1.36
LIMA1-206ENST00000550611 DMRTC2Q8IXT2 367 aaPredicted RBP6.54□□□□□ -1.36
LIMA1-206ENST00000550611 TNS4Q8IZW8 715 aa6.54□□□□□ -1.36
LIMA1-206ENST00000550611 HSH2DQ96JZ2 352 aa6.54□□□□□ -1.36
LIMA1-206ENST00000550611 PCMTD2Q9NV79 361 aa6.54□□□□□ -1.36
LIMA1-206ENST00000550611 FGD5Q6ZNL6 1462 aa6.53□□□□□ -1.36
LIMA1-206ENST00000550611 NOS3P29474 1203 aa6.53□□□□□ -1.36
LIMA1-206ENST00000550611 PSMA6P60900 246 aaKnown RBP6.53□□□□□ -1.36
LIMA1-206ENST00000550611 PSME1Q06323 249 aa6.53□□□□□ -1.36
LIMA1-206ENST00000550611 TBCELQ5QJ74 424 aa6.53□□□□□ -1.36
LIMA1-206ENST00000550611 NFATC2IPQ8NCF5 419 aa6.53□□□□□ -1.36
LIMA1-206ENST00000550611 SUSD3Q96L08 255 aa6.53□□□□□ -1.36
LIMA1-206ENST00000550611 NAGPAQ9UK23 515 aa6.53□□□□□ -1.36
LIMA1-206ENST00000550611 WDR97A6NE52 1622 aa6.53□□□□□ -1.36
LIMA1-206ENST00000550611 PIK3CDO00329 1044 aa6.52□□□□□ -1.37
LIMA1-206ENST00000550611 COBLO75128 1261 aa6.52□□□□□ -1.37
LIMA1-206ENST00000550611 RGS9O75916 674 aaPredicted RBP6.52□□□□□ -1.37
LIMA1-206ENST00000550611 IREB2P48200 963 aaKnown RBP6.52□□□□□ -1.37
LIMA1-206ENST00000550611 TBC1D8BQ0IIM8 1120 aa6.52□□□□□ -1.37
LIMA1-206ENST00000550611 PRR23CQ6ZRP0 262 aa6.52□□□□□ -1.37
LIMA1-206ENST00000550611 DNAJB12Q9NXW2 375 aaKnown RBP6.52□□□□□ -1.37
LIMA1-206ENST00000550611 CEP170Q5SW79 1584 aa6.52□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms