RNA–Protein interactions for RNA: ENST00000550611.1

LIMA1-206, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-206ENST00000550611 AEBP2Q6ZN18 517 aaPredicted RBP23.23■■□□□ 1.31
LIMA1-206ENST00000550611 CHIC1Q5VXU3 224 aa21.82■■□□□ 1.08
LIMA1-206ENST00000550611 SENP3Q9H4L4 574 aaPredicted RBP19.92■□□□□ 0.78
LIMA1-206ENST00000550611 PHF23Q9BUL5 403 aaPredicted RBP19.58■□□□□ 0.72
LIMA1-206ENST00000550611 FOXD1Q16676 465 aa18.56■□□□□ 0.56
LIMA1-206ENST00000550611 POTEDQ86YR6 584 aa17.55■□□□□ 0.4
LIMA1-206ENST00000550611 MSH5O43196 834 aa17.52■□□□□ 0.4
LIMA1-206ENST00000550611 PLPPR3Q6T4P5 718 aa17.31■□□□□ 0.36
LIMA1-206ENST00000550611 PIAS4Q8N2W9 510 aaPredicted RBP17.27■□□□□ 0.36
LIMA1-206ENST00000550611 PPP6R1Q9UPN7 881 aa17.11■□□□□ 0.33
LIMA1-206ENST00000550611 ADRA2BP18089 450 aa17.03■□□□□ 0.32
LIMA1-206ENST00000550611 DMRT2Q9Y5R5 561 aa15.75■□□□□ 0.11
LIMA1-206ENST00000550611 MAPK8IP2Q13387 824 aaPredicted RBP15.71■□□□□ 0.11
LIMA1-206ENST00000550611 SCAF1Q9H7N4 1312 aaKnown RBP15.66■□□□□ 0.1
LIMA1-206ENST00000550611 CACNB1Q02641 598 aaPredicted RBP15.16■□□□□ 0.02
LIMA1-206ENST00000550611 PPP4R3CPQ6ZMV5 832 aa15.1■□□□□ 0.01
LIMA1-206ENST00000550611 HOXD11P31277 338 aaPredicted RBP15.06■□□□□ 0
LIMA1-206ENST00000550611 DCAF8L1A6NGE4 600 aa15.02■□□□□ -0
LIMA1-206ENST00000550611 CNKSR2Q8WXI2 1034 aa14.92□□□□□ -0.02
LIMA1-206ENST00000550611 RNF39Q9H2S5 420 aa14.92□□□□□ -0.02
LIMA1-206ENST00000550611 RNF216Q9NWF9 866 aaPredicted RBP14.87□□□□□ -0.03
LIMA1-206ENST00000550611 C1QBPQ07021 282 aaKnown RBP14.7□□□□□ -0.06
LIMA1-206ENST00000550611 DNAJC5BQ9UF47 199 aa14.68□□□□□ -0.06
LIMA1-206ENST00000550611 NCBP3Q53F19 620 aaKnown RBP14.48□□□□□ -0.09
LIMA1-206ENST00000550611 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.3□□□□□ -0.12
LIMA1-206ENST00000550611 NPM3O75607 178 aaKnown RBP14.23□□□□□ -0.13
LIMA1-206ENST00000550611 U3KPZ7 1027 aaPredicted RBP13.98□□□□□ -0.17
LIMA1-206ENST00000550611 DSG3P32926 999 aa13.85□□□□□ -0.19
LIMA1-206ENST00000550611 SPINK5Q9NQ38 1064 aaPredicted RBP13.83□□□□□ -0.2
LIMA1-206ENST00000550611 CAPN15O75808 1086 aa13.82□□□□□ -0.2
LIMA1-206ENST00000550611 KCNA4P22459 653 aa13.69□□□□□ -0.22
LIMA1-206ENST00000550611 POTEHQ6S545 545 aa13.69□□□□□ -0.22
LIMA1-206ENST00000550611 SLC4A2P04920 1241 aa13.67□□□□□ -0.22
LIMA1-206ENST00000550611 APLP2Q06481 763 aa13.62□□□□□ -0.23
LIMA1-206ENST00000550611 ZNF219Q9P2Y4 722 aaPredicted RBP13.55□□□□□ -0.24
LIMA1-206ENST00000550611 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.54□□□□□ -0.24
LIMA1-206ENST00000550611 HNRNPUL2Q1KMD3 747 aaKnown RBP13.54□□□□□ -0.24
LIMA1-206ENST00000550611 TRHP20396 242 aaPredicted RBP13.52□□□□□ -0.25
LIMA1-206ENST00000550611 ABCB7O75027 752 aa13.46□□□□□ -0.25
LIMA1-206ENST00000550611 SAMD1Q6SPF0 538 aaPredicted RBP13.43□□□□□ -0.26
LIMA1-206ENST00000550611 RBM42Q9BTD8 480 aaKnown RBP13.26□□□□□ -0.29
LIMA1-206ENST00000550611 MYCNP04198 464 aaPredicted RBP13.2□□□□□ -0.3
LIMA1-206ENST00000550611 POLA2Q14181 598 aa13.12□□□□□ -0.31
LIMA1-206ENST00000550611 CHRDL2Q6WN34 429 aa13.05□□□□□ -0.32
LIMA1-206ENST00000550611 ZBTB12Q9Y330 459 aaPredicted RBP12.9□□□□□ -0.34
LIMA1-206ENST00000550611 AKT1S1Q96B36 256 aa12.89□□□□□ -0.35
LIMA1-206ENST00000550611 FOXD4L1Q9NU39 408 aa12.88□□□□□ -0.35
LIMA1-206ENST00000550611 SLC4A1APQ9BWU0 796 aaKnown RBP12.87□□□□□ -0.35
LIMA1-206ENST00000550611 ATF5Q9Y2D1 282 aaPredicted RBP12.85□□□□□ -0.35
LIMA1-206ENST00000550611 REM2Q8IYK8 340 aaPredicted RBP12.74□□□□□ -0.37
LIMA1-206ENST00000550611 SP7Q8TDD2 431 aaPredicted RBP12.71□□□□□ -0.37
LIMA1-206ENST00000550611 OSCARQ8IYS5 282 aa12.7□□□□□ -0.38
LIMA1-206ENST00000550611 PIP4P2Q8N4L2 257 aa12.67□□□□□ -0.38
LIMA1-206ENST00000550611 PITPNM1O00562 1244 aa12.6□□□□□ -0.39
LIMA1-206ENST00000550611 ZBTB22O15209 634 aa12.57□□□□□ -0.4
LIMA1-206ENST00000550611 ATXN8OSP0DMR3 200 aa12.57□□□□□ -0.4
LIMA1-206ENST00000550611 FXR2P51116 673 aaKnown RBP eCLIP12.57□□□□□ -0.4
LIMA1-206ENST00000550611 HAX1O00165 279 aa12.5□□□□□ -0.41
LIMA1-206ENST00000550611 SPDYE2BA6NHP3 402 aa12.47□□□□□ -0.41
LIMA1-206ENST00000550611 SPDYE6P0CI01 402 aa12.47□□□□□ -0.41
LIMA1-206ENST00000550611 SPDYE2Q495Y8 402 aa12.47□□□□□ -0.41
LIMA1-206ENST00000550611 FBLN2P98095 1184 aa12.43□□□□□ -0.42
LIMA1-206ENST00000550611 EVX2Q03828 476 aa12.31□□□□□ -0.44
LIMA1-206ENST00000550611 SPDYE1Q8NFV5 336 aaPredicted RBP12.31□□□□□ -0.44
LIMA1-206ENST00000550611 MKRN4PQ13434 485 aaPredicted RBP12.27□□□□□ -0.45
LIMA1-206ENST00000550611 PRKAR2AP13861 404 aaKnown RBP12.26□□□□□ -0.45
LIMA1-206ENST00000550611 SSUH2Q9Y2M2 353 aa12.26□□□□□ -0.45
LIMA1-206ENST00000550611 CLEC11AQ9Y240 323 aa12.23□□□□□ -0.45
LIMA1-206ENST00000550611 ZNF692Q9BU19 519 aaPredicted RBP12.22□□□□□ -0.45
LIMA1-206ENST00000550611 C19orf67A6NJJ6 358 aa12.18□□□□□ -0.46
LIMA1-206ENST00000550611 GABBR2O75899 941 aa12.04□□□□□ -0.48
LIMA1-206ENST00000550611 PABPN1Q86U42 306 aaKnown RBP eCLIP12.03□□□□□ -0.48
LIMA1-206ENST00000550611 PRR29P0C7W0 189 aa12.02□□□□□ -0.49
LIMA1-206ENST00000550611 CHADLQ6NUI6 762 aa12.01□□□□□ -0.49
LIMA1-206ENST00000550611 LHX8Q68G74 356 aa11.91□□□□□ -0.5
LIMA1-206ENST00000550611 FARP1Q9Y4F1 1045 aaPredicted RBP11.87□□□□□ -0.51
LIMA1-206ENST00000550611 CD44P16070 742 aaKnown RBP11.85□□□□□ -0.51
LIMA1-206ENST00000550611 CLCN6P51797 869 aa11.85□□□□□ -0.51
LIMA1-206ENST00000550611 POTEIP0CG38 1075 aa11.78□□□□□ -0.52
LIMA1-206ENST00000550611 CSRNP3Q8WYN3 585 aa11.73□□□□□ -0.53
LIMA1-206ENST00000550611 ZNF579Q8NAF0 562 aaKnown RBP11.7□□□□□ -0.54
LIMA1-206ENST00000550611 STAG3Q9UJ98 1225 aa11.69□□□□□ -0.54
LIMA1-206ENST00000550611 DCBLD2Q96PD2 775 aa11.66□□□□□ -0.54
LIMA1-206ENST00000550611 CREBZFQ9NS37 354 aa11.66□□□□□ -0.54
LIMA1-206ENST00000550611 ZRANB1Q9UGI0 708 aa11.63□□□□□ -0.55
LIMA1-206ENST00000550611 SPDYE4A6NLX3 237 aa11.55□□□□□ -0.56
LIMA1-206ENST00000550611 GALR2O43603 387 aaPredicted RBP11.52□□□□□ -0.57
LIMA1-206ENST00000550611 PAK3O75914 559 aaPredicted RBP11.51□□□□□ -0.57
LIMA1-206ENST00000550611 NPM1P06748 294 aaKnown RBP eCLIP11.46□□□□□ -0.57
LIMA1-206ENST00000550611 MNX1P50219 401 aaPredicted RBP11.44□□□□□ -0.58
LIMA1-206ENST00000550611 PHF12Q96QT6 1004 aa11.44□□□□□ -0.58
LIMA1-206ENST00000550611 OTUD5Q96G74 571 aa11.41□□□□□ -0.58
LIMA1-206ENST00000550611 POTEB2H3BUK9 544 aa11.38□□□□□ -0.59
LIMA1-206ENST00000550611 EHMT2Q96KQ7 1210 aa11.36□□□□□ -0.59
LIMA1-206ENST00000550611 PELP1Q8IZL8 1130 aaKnown RBP11.33□□□□□ -0.6
LIMA1-206ENST00000550611 PLSCR2Q9NRY7 297 aa11.33□□□□□ -0.6
LIMA1-206ENST00000550611 ASTLQ6HA08 431 aaPredicted RBP11.31□□□□□ -0.6
LIMA1-206ENST00000550611 PROM2Q8N271 834 aa11.29□□□□□ -0.6
LIMA1-206ENST00000550611 MS4A3Q96HJ5 214 aa11.29□□□□□ -0.6
LIMA1-206ENST00000550611 ATMINO43313 823 aaPredicted RBP11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms