RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 ZBTB3Q9H5J0 574 aa13.18□□□□□ -0.3
VPS28-204ENST00000526054 BABAM1Q9NWV8 329 aa13.18□□□□□ -0.3
VPS28-204ENST00000526054 UBN2Q6ZU65 1347 aa13.17□□□□□ -0.3
VPS28-204ENST00000526054 ZNF541Q9H0D2 1346 aa13.17□□□□□ -0.3
VPS28-204ENST00000526054 SNED1Q8TER0 1413 aa13.17□□□□□ -0.3
VPS28-204ENST00000526054 POTEIP0CG38 1075 aa13.17□□□□□ -0.3
VPS28-204ENST00000526054 POTEJP0CG39 1038 aa13.17□□□□□ -0.3
VPS28-204ENST00000526054 CCDC27Q2M243 656 aa13.17□□□□□ -0.3
VPS28-204ENST00000526054 CRY2Q49AN0 593 aa13.17□□□□□ -0.3
VPS28-204ENST00000526054 RPGRQ92834 1020 aaKnown RBP13.17□□□□□ -0.3
VPS28-204ENST00000526054 L3MBTL3Q96JM7 780 aaPredicted RBP13.17□□□□□ -0.3
VPS28-204ENST00000526054 TSPYL4Q9UJ04 414 aa13.17□□□□□ -0.3
VPS28-204ENST00000526054 IARSP41252 1262 aaKnown RBP13.16□□□□□ -0.3
VPS28-204ENST00000526054 ADAMTSL1Q8N6G6 1762 aa13.16□□□□□ -0.3
VPS28-204ENST00000526054 LDHDQ86WU2 507 aa13.15□□□□□ -0.3
VPS28-204ENST00000526054 TAF1DQ9H5J8 278 aaPredicted RBP13.15□□□□□ -0.3
VPS28-204ENST00000526054 CREBZFQ9NS37 354 aa13.15□□□□□ -0.3
VPS28-204ENST00000526054 LAMB2P55268 1798 aa13.15□□□□□ -0.31
VPS28-204ENST00000526054 NTSR2O95665 410 aa13.14□□□□□ -0.31
VPS28-204ENST00000526054 HSPA1AP0DMV8 641 aaKnown RBP13.14□□□□□ -0.31
VPS28-204ENST00000526054 HSPA1BP0DMV9 641 aaKnown RBP13.14□□□□□ -0.31
VPS28-204ENST00000526054 COL13A1Q5TAT6 717 aaPredicted RBP13.14□□□□□ -0.31
VPS28-204ENST00000526054 SUSD4Q5VX71 490 aa13.14□□□□□ -0.31
VPS28-204ENST00000526054 GIGYF2Q6Y7W6 1299 aaKnown RBP13.14□□□□□ -0.31
VPS28-204ENST00000526054 SYNE4Q8N205 404 aa13.14□□□□□ -0.31
VPS28-204ENST00000526054 PSMD1Q99460 953 aa13.14□□□□□ -0.31
VPS28-204ENST00000526054 HACL1Q9UJ83 578 aa13.14□□□□□ -0.31
VPS28-204ENST00000526054 LAS1LQ9Y4W2 734 aaKnown RBP13.14□□□□□ -0.31
VPS28-204ENST00000526054 COL4A5P29400 1685 aa13.14□□□□□ -0.31
VPS28-204ENST00000526054 RNF123Q5XPI4 1314 aa13.13□□□□□ -0.31
VPS28-204ENST00000526054 EIF2S2P20042 333 aaKnown RBP13.13□□□□□ -0.31
VPS28-204ENST00000526054 GNAI1P63096 354 aa13.13□□□□□ -0.31
VPS28-204ENST00000526054 PARP10Q53GL7 1025 aa13.13□□□□□ -0.31
VPS28-204ENST00000526054 EAPPQ56P03 285 aaPredicted RBP13.13□□□□□ -0.31
VPS28-204ENST00000526054 CC2D2BQ6DHV5 1058 aa13.13□□□□□ -0.31
VPS28-204ENST00000526054 PPP1R42Q7Z4L9 355 aa13.13□□□□□ -0.31
VPS28-204ENST00000526054 WWC1Q8IX03 1113 aa13.13□□□□□ -0.31
VPS28-204ENST00000526054 ZNF34Q8IZ26 560 aa13.13□□□□□ -0.31
VPS28-204ENST00000526054 JDP2Q8WYK2 163 aa13.13□□□□□ -0.31
VPS28-204ENST00000526054 RBM17Q96I25 401 aaKnown RBP13.13□□□□□ -0.31
VPS28-204ENST00000526054 CFAP44Q96MT7 982 aa13.13□□□□□ -0.31
VPS28-204ENST00000526054 IFT57Q9NWB7 429 aa13.13□□□□□ -0.31
VPS28-204ENST00000526054 PASKQ96RG2 1323 aa13.13□□□□□ -0.31
VPS28-204ENST00000526054 FZD9O00144 591 aa13.12□□□□□ -0.31
VPS28-204ENST00000526054 CHL1O00533 1208 aa13.12□□□□□ -0.31
VPS28-204ENST00000526054 PPEF1O14829 653 aaPredicted RBP13.12□□□□□ -0.31
VPS28-204ENST00000526054 HOXA10P31260 410 aaPredicted RBP13.12□□□□□ -0.31
VPS28-204ENST00000526054 EPHX2P34913 555 aa13.12□□□□□ -0.31
VPS28-204ENST00000526054 GPC2Q8N158 579 aa13.12□□□□□ -0.31
VPS28-204ENST00000526054 MKRN1Q9UHC7 482 aaKnown RBP13.12□□□□□ -0.31
VPS28-204ENST00000526054 SALL2Q9Y467 1007 aaPredicted RBP13.12□□□□□ -0.31
VPS28-204ENST00000526054 IL16Q14005 1332 aa13.12□□□□□ -0.31
VPS28-204ENST00000526054 LTBP1Q14766 1721 aa13.11□□□□□ -0.31
VPS28-204ENST00000526054 ANXA1P04083 346 aa13.11□□□□□ -0.31
VPS28-204ENST00000526054 PDIA6Q15084 440 aa13.11□□□□□ -0.31
VPS28-204ENST00000526054 PROSER3Q2NL68 480 aa13.11□□□□□ -0.31
VPS28-204ENST00000526054 GRIPAP1Q4V328 841 aa13.11□□□□□ -0.31
VPS28-204ENST00000526054 LRP10Q7Z4F1 713 aa13.11□□□□□ -0.31
VPS28-204ENST00000526054 PNMA8AQ86V59 439 aaPredicted RBP13.11□□□□□ -0.31
VPS28-204ENST00000526054 CRAMP1Q96RY5 1269 aa13.11□□□□□ -0.31
VPS28-204ENST00000526054 CNTNAP1P78357 1384 aa13.1□□□□□ -0.31
VPS28-204ENST00000526054 TCERG1O14776 1098 aaKnown RBP13.1□□□□□ -0.31
VPS28-204ENST00000526054 ZNF853P0CG23 659 aa13.1□□□□□ -0.31
VPS28-204ENST00000526054 EIF6P56537 245 aaKnown RBP13.1□□□□□ -0.31
VPS28-204ENST00000526054 C3orf67Q6ZVT6 689 aa13.1□□□□□ -0.31
VPS28-204ENST00000526054 WDR63Q8IWG1 891 aa13.1□□□□□ -0.31
VPS28-204ENST00000526054 TNS4Q8IZW8 715 aa13.1□□□□□ -0.31
VPS28-204ENST00000526054 LARGE2Q8N3Y3 721 aa13.1□□□□□ -0.31
VPS28-204ENST00000526054 UTP14AQ9BVJ6 771 aaKnown RBP13.1□□□□□ -0.31
VPS28-204ENST00000526054 MBIPQ9NS73 344 aa13.1□□□□□ -0.31
VPS28-204ENST00000526054 CLEC11AQ9Y240 323 aa13.1□□□□□ -0.31
VPS28-204ENST00000526054 LMOD1P29536 600 aaPredicted RBP13.09□□□□□ -0.31
VPS28-204ENST00000526054 SLC51AQ86UW1 340 aa13.09□□□□□ -0.31
VPS28-204ENST00000526054 NECTIN2Q92692 538 aa13.09□□□□□ -0.31
VPS28-204ENST00000526054 NLRP3Q96P20 1036 aa13.09□□□□□ -0.31
VPS28-204ENST00000526054 TMX4Q9H1E5 349 aaPredicted RBP13.09□□□□□ -0.31
VPS28-204ENST00000526054 GJA3Q9Y6H8 435 aa13.09□□□□□ -0.31
VPS28-204ENST00000526054 TMEM88BA6NKF7 163 aa13.08□□□□□ -0.32
VPS28-204ENST00000526054 AIMP1Q12904 312 aaKnown RBP13.08□□□□□ -0.32
VPS28-204ENST00000526054 HSP90AB3PQ58FF7 597 aa13.08□□□□□ -0.32
VPS28-204ENST00000526054 NIM1KQ8IY84 436 aa13.08□□□□□ -0.32
VPS28-204ENST00000526054 XAGE3Q8WTP9 111 aa13.08□□□□□ -0.32
VPS28-204ENST00000526054 ABCC4O15439 1325 aa13.08□□□□□ -0.32
VPS28-204ENST00000526054 DDX60Q8IY21 1712 aaKnown RBP13.08□□□□□ -0.32
VPS28-204ENST00000526054 PPIP5K2O43314 1243 aa13.07□□□□□ -0.32
VPS28-204ENST00000526054 ITGBL1O95965 494 aaPredicted RBP13.07□□□□□ -0.32
VPS28-204ENST00000526054 HOXB7P09629 217 aa13.07□□□□□ -0.32
VPS28-204ENST00000526054 MAP1SQ66K74 1059 aaPredicted RBP13.07□□□□□ -0.32
VPS28-204ENST00000526054 COPS6Q7L5N1 327 aa13.07□□□□□ -0.32
VPS28-204ENST00000526054 ATP6V0A2Q9Y487 856 aa13.07□□□□□ -0.32
VPS28-204ENST00000526054 LRRC37AA6NMS7 1700 aa13.07□□□□□ -0.32
VPS28-204ENST00000526054 CAPN15O75808 1086 aa13.06□□□□□ -0.32
VPS28-204ENST00000526054 SCNN1DP51172 638 aa13.06□□□□□ -0.32
VPS28-204ENST00000526054 AOC3Q16853 763 aa13.06□□□□□ -0.32
VPS28-204ENST00000526054 KRT24Q2M2I5 525 aa13.06□□□□□ -0.32
VPS28-204ENST00000526054 SLC10A5Q5PT55 438 aa13.06□□□□□ -0.32
VPS28-204ENST00000526054 NLRP10Q86W26 655 aa13.06□□□□□ -0.32
VPS28-204ENST00000526054 CNTROBQ8N137 903 aa13.06□□□□□ -0.32
VPS28-204ENST00000526054 MYH16Q9H6N6 1097 aa13.06□□□□□ -0.32
VPS28-204ENST00000526054 DDX21Q9NR30 783 aaKnown RBP eCLIP13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 118.5 ms