RNA–Protein interactions for RNA: ENST00000524533.1

HIF3A-208, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 3

Gene HIF3A, Length 507 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-208ENST00000524533 TAF1DQ9H5J8 278 aaPredicted RBP21.34■■□□□ 1.01
HIF3A-208ENST00000524533 HOXA10P31260 410 aaPredicted RBP21.33■■□□□ 1.01
HIF3A-208ENST00000524533 DDX10Q13206 875 aaKnown RBP21.33■■□□□ 1.01
HIF3A-208ENST00000524533 PDIA6Q15084 440 aa21.33■■□□□ 1.01
HIF3A-208ENST00000524533 PARP10Q53GL7 1025 aa21.33■■□□□ 1.01
HIF3A-208ENST00000524533 LRP10Q7Z4F1 713 aa21.33■■□□□ 1.01
HIF3A-208ENST00000524533 LDHDQ86WU2 507 aa21.33■■□□□ 1.01
HIF3A-208ENST00000524533 ADAMTSL1Q8N6G6 1762 aa21.33■■□□□ 1
HIF3A-208ENST00000524533 PROSER3Q2NL68 480 aa21.32■■□□□ 1
HIF3A-208ENST00000524533 CCDC146Q8IYE0 955 aa21.32■■□□□ 1
HIF3A-208ENST00000524533 RBM17Q96I25 401 aaKnown RBP21.32■■□□□ 1
HIF3A-208ENST00000524533 LAMB2P55268 1798 aa21.31■■□□□ 1
HIF3A-208ENST00000524533 FZD9O00144 591 aa21.31■■□□□ 1
HIF3A-208ENST00000524533 ANXA1P04083 346 aa21.31■■□□□ 1
HIF3A-208ENST00000524533 NEUROD2Q15784 382 aa21.31■■□□□ 1
HIF3A-208ENST00000524533 JDP2Q8WYK2 163 aa21.31■■□□□ 1
HIF3A-208ENST00000524533 CRAMP1Q96RY5 1269 aa21.31■■□□□ 1
HIF3A-208ENST00000524533 CREBZFQ9NS37 354 aa21.31■■□□□ 1
HIF3A-208ENST00000524533 HACL1Q9UJ83 578 aa21.31■■□□□ 1
HIF3A-208ENST00000524533 COL4A5P29400 1685 aa21.31■■□□□ 1
HIF3A-208ENST00000524533 PCNTO95613 3336 aa21.31■■□□□ 1
HIF3A-208ENST00000524533 PPEF1O14829 653 aaPredicted RBP21.3■■□□□ 1
HIF3A-208ENST00000524533 WDR43Q15061 677 aaKnown RBP eCLIP21.3■■□□□ 1
HIF3A-208ENST00000524533 EAPPQ56P03 285 aaPredicted RBP21.3■■□□□ 1
HIF3A-208ENST00000524533 RNF123Q5XPI4 1314 aa21.29■■□□□ 1
HIF3A-208ENST00000524533 GRIPAP1Q4V328 841 aa21.29■■□□□ 1
HIF3A-208ENST00000524533 C3orf67Q6ZVT6 689 aa21.29■■□□□ 1
HIF3A-208ENST00000524533 GPC2Q8N158 579 aa21.29■■□□□ 1
HIF3A-208ENST00000524533 NECTIN2Q92692 538 aa21.29■■□□□ 1
HIF3A-208ENST00000524533 UTP14AQ9BVJ6 771 aaKnown RBP21.29■■□□□ 1
HIF3A-208ENST00000524533 EPHX2P34913 555 aa21.28■■□□□ 1
HIF3A-208ENST00000524533 RUNDC1Q96C34 613 aa21.28■■□□□ 1
HIF3A-208ENST00000524533 NLRP3Q96P20 1036 aa21.28■■□□□ 1
HIF3A-208ENST00000524533 PASKQ96RG2 1323 aa21.28■■□□□ 1
HIF3A-208ENST00000524533 TCERG1O14776 1098 aaKnown RBP21.27■■□□□ 1
HIF3A-208ENST00000524533 HSPA1AP0DMV8 641 aaKnown RBP21.27■■□□□ 1
HIF3A-208ENST00000524533 HSPA1BP0DMV9 641 aaKnown RBP21.27■■□□□ 1
HIF3A-208ENST00000524533 AIMP1Q12904 312 aaKnown RBP21.27■■□□□ 1
HIF3A-208ENST00000524533 HSP90AB3PQ58FF7 597 aa21.27■■□□□ 1
HIF3A-208ENST00000524533 COL13A1Q5TAT6 717 aaPredicted RBP21.27■■□□□ 1
HIF3A-208ENST00000524533 SLC51AQ86UW1 340 aa21.27■■□□□ 1
HIF3A-208ENST00000524533 EIF6P56537 245 aaKnown RBP21.26■□□□□ 0.99
HIF3A-208ENST00000524533 COPS6Q7L5N1 327 aa21.26■□□□□ 0.99
HIF3A-208ENST00000524533 PNMA8AQ86V59 439 aaPredicted RBP21.26■□□□□ 0.99
HIF3A-208ENST00000524533 XAGE3Q8WTP9 111 aa21.26■□□□□ 0.99
HIF3A-208ENST00000524533 MKRN1Q9UHC7 482 aaKnown RBP21.26■□□□□ 0.99
HIF3A-208ENST00000524533 CLEC11AQ9Y240 323 aa21.26■□□□□ 0.99
HIF3A-208ENST00000524533 LAS1LQ9Y4W2 734 aaKnown RBP21.26■□□□□ 0.99
HIF3A-208ENST00000524533 CHL1O00533 1208 aa21.25■□□□□ 0.99
HIF3A-208ENST00000524533 LTBP1Q14766 1721 aa21.25■□□□□ 0.99
HIF3A-208ENST00000524533 KRT24Q2M2I5 525 aa21.25■□□□□ 0.99
HIF3A-208ENST00000524533 SLC10A5Q5PT55 438 aa21.25■□□□□ 0.99
HIF3A-208ENST00000524533 LARGE2Q8N3Y3 721 aa21.25■□□□□ 0.99
HIF3A-208ENST00000524533 TMX4Q9H1E5 349 aaPredicted RBP21.25■□□□□ 0.99
HIF3A-208ENST00000524533 DDX21Q9NR30 783 aaKnown RBP eCLIP21.25■□□□□ 0.99
HIF3A-208ENST00000524533 TRIM35Q9UPQ4 493 aa21.25■□□□□ 0.99
HIF3A-208ENST00000524533 GJA3Q9Y6H8 435 aa21.25■□□□□ 0.99
HIF3A-208ENST00000524533 ABCC4O15439 1325 aa21.25■□□□□ 0.99
HIF3A-208ENST00000524533 NLRP10Q86W26 655 aa21.24■□□□□ 0.99
HIF3A-208ENST00000524533 CNTNAP1P78357 1384 aa21.23■□□□□ 0.99
HIF3A-208ENST00000524533 ITGBL1O95965 494 aaPredicted RBP21.22■□□□□ 0.99
HIF3A-208ENST00000524533 LMOD1P29536 600 aaPredicted RBP21.22■□□□□ 0.99
HIF3A-208ENST00000524533 HDGFL1Q5TGJ6 251 aa21.22■□□□□ 0.99
HIF3A-208ENST00000524533 NIM1KQ8IY84 436 aa21.22■□□□□ 0.99
HIF3A-208ENST00000524533 CHPF2Q9P2E5 772 aa21.22■□□□□ 0.99
HIF3A-208ENST00000524533 ADAMTS8Q9UP79 889 aa21.22■□□□□ 0.99
HIF3A-208ENST00000524533 ATP6V0A2Q9Y487 856 aa21.22■□□□□ 0.99
HIF3A-208ENST00000524533 DDX60Q8IY21 1712 aaKnown RBP21.21■□□□□ 0.99
HIF3A-208ENST00000524533 TMEM88BA6NKF7 163 aa21.21■□□□□ 0.99
HIF3A-208ENST00000524533 PPIP5K2O43314 1243 aa21.21■□□□□ 0.99
HIF3A-208ENST00000524533 HCLS1P14317 486 aaPredicted RBP21.21■□□□□ 0.99
HIF3A-208ENST00000524533 TCIRG1Q13488 830 aa21.21■□□□□ 0.99
HIF3A-208ENST00000524533 TRMT112Q9UI30 125 aaKnown RBP21.21■□□□□ 0.99
HIF3A-208ENST00000524533 SH3TC1Q8TE82 1336 aa21.21■□□□□ 0.99
HIF3A-208ENST00000524533 HOXB7P09629 217 aa21.2■□□□□ 0.98
HIF3A-208ENST00000524533 MAP1SQ66K74 1059 aaPredicted RBP21.2■□□□□ 0.98
HIF3A-208ENST00000524533 AOC3Q16853 763 aa21.19■□□□□ 0.98
HIF3A-208ENST00000524533 TNS4Q8IZW8 715 aa21.19■□□□□ 0.98
HIF3A-208ENST00000524533 SUPT20HQ8NEM7 779 aa21.19■□□□□ 0.98
HIF3A-208ENST00000524533 LRRC37AA6NMS7 1700 aa21.18■□□□□ 0.98
HIF3A-208ENST00000524533 SCNN1DP51172 638 aa21.18■□□□□ 0.98
HIF3A-208ENST00000524533 DDX46Q7L014 1031 aaKnown RBP21.18■□□□□ 0.98
HIF3A-208ENST00000524533 CNTROBQ8N137 903 aa21.18■□□□□ 0.98
HIF3A-208ENST00000524533 VPS33BQ9H267 617 aa21.18■□□□□ 0.98
HIF3A-208ENST00000524533 DBF4Q9UBU7 674 aaPredicted RBP21.18■□□□□ 0.98
HIF3A-208ENST00000524533 TAF1P21675 1872 aa21.18■□□□□ 0.98
HIF3A-208ENST00000524533 BBOX1O75936 387 aa21.17■□□□□ 0.98
HIF3A-208ENST00000524533 DPP8Q6V1X1 898 aaPredicted RBP21.17■□□□□ 0.98
HIF3A-208ENST00000524533 PLBD2Q8NHP8 589 aa21.17■□□□□ 0.98
HIF3A-208ENST00000524533 CFAP44Q96MT7 982 aa21.17■□□□□ 0.98
HIF3A-208ENST00000524533 PRKRIP1Q9H875 184 aaPredicted RBP21.17■□□□□ 0.98
HIF3A-208ENST00000524533 EPS15P42566 896 aa21.16■□□□□ 0.98
HIF3A-208ENST00000524533 GRAPQ13588 217 aa21.16■□□□□ 0.98
HIF3A-208ENST00000524533 SP8Q8IXZ3 490 aa21.16■□□□□ 0.98
HIF3A-208ENST00000524533 GRAPLQ8TC17 118 aaPredicted RBP21.16■□□□□ 0.98
HIF3A-208ENST00000524533 ZNF428Q96B54 188 aa21.16■□□□□ 0.98
HIF3A-208ENST00000524533 RTFDC1Q9BY42 306 aaPredicted RBP21.16■□□□□ 0.98
HIF3A-208ENST00000524533 DUOX1Q9NRD9 1551 aa21.15■□□□□ 0.98
HIF3A-208ENST00000524533 ANKRD13DQ6ZTN6 518 aa21.15■□□□□ 0.98
HIF3A-208ENST00000524533 MPNDQ8N594 471 aa21.15■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms