RNA–Protein interactions for RNA: ENST00000467819.5

COL9A3-207, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL9A3, Length 993 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-207ENST00000467819 IQCA1LA6NCM1 817 aa27.63■■■□□ 2.01
COL9A3-207ENST00000467819 PROSER3Q2NL68 480 aa27.63■■■□□ 2.01
COL9A3-207ENST00000467819 LRP10Q7Z4F1 713 aa27.63■■■□□ 2.01
COL9A3-207ENST00000467819 NECTIN2Q92692 538 aa27.63■■■□□ 2.01
COL9A3-207ENST00000467819 L3MBTL3Q96JM7 780 aaPredicted RBP27.63■■■□□ 2.01
COL9A3-207ENST00000467819 BABAM1Q9NWV8 329 aa27.63■■■□□ 2.01
COL9A3-207ENST00000467819 LAMB2P55268 1798 aa27.61■■■□□ 2.01
COL9A3-207ENST00000467819 PPP1R42Q7Z4L9 355 aa27.61■■■□□ 2.01
COL9A3-207ENST00000467819 TAF1DQ9H5J8 278 aaPredicted RBP27.61■■■□□ 2.01
COL9A3-207ENST00000467819 HOXA10P31260 410 aaPredicted RBP27.6■■■□□ 2.01
COL9A3-207ENST00000467819 PARP10Q53GL7 1025 aa27.6■■■□□ 2.01
COL9A3-207ENST00000467819 PSMD1Q99460 953 aa27.6■■■□□ 2.01
COL9A3-207ENST00000467819 TCERG1O14776 1098 aaKnown RBP27.59■■■□□ 2.01
COL9A3-207ENST00000467819 WDR43Q15061 677 aaKnown RBP eCLIP27.59■■■□□ 2.014e-6■□□□□ 8.9
COL9A3-207ENST00000467819 C3orf67Q6ZVT6 689 aa27.59■■■□□ 2.01
COL9A3-207ENST00000467819 RBM17Q96I25 401 aaKnown RBP27.59■■■□□ 2.01
COL9A3-207ENST00000467819 LAS1LQ9Y4W2 734 aaKnown RBP27.59■■■□□ 2.01
COL9A3-207ENST00000467819 AIMP1Q12904 312 aaKnown RBP27.58■■■□□ 2.01
COL9A3-207ENST00000467819 EAPPQ56P03 285 aaPredicted RBP27.58■■■□□ 2.01
COL9A3-207ENST00000467819 CC2D2BQ6DHV5 1058 aa27.58■■■□□ 2.01
COL9A3-207ENST00000467819 SLC51AQ86UW1 340 aa27.58■■■□□ 2.01
COL9A3-207ENST00000467819 LDHDQ86WU2 507 aa27.58■■■□□ 2.01
COL9A3-207ENST00000467819 COL4A5P29400 1685 aa27.58■■■□□ 2.01
COL9A3-207ENST00000467819 FZD9O00144 591 aa27.57■■■□□ 2
COL9A3-207ENST00000467819 PPEF1O14829 653 aaPredicted RBP27.57■■■□□ 2
COL9A3-207ENST00000467819 KRT24Q2M2I5 525 aa27.57■■■□□ 2
COL9A3-207ENST00000467819 RUNDC1Q96C34 613 aa27.57■■■□□ 2
COL9A3-207ENST00000467819 CRAMP1Q96RY5 1269 aa27.57■■■□□ 2
COL9A3-207ENST00000467819 HACL1Q9UJ83 578 aa27.57■■■□□ 2
COL9A3-207ENST00000467819 COPS6Q7L5N1 327 aa27.56■■■□□ 2
COL9A3-207ENST00000467819 JDP2Q8WYK2 163 aa27.56■■■□□ 2
COL9A3-207ENST00000467819 UTP14AQ9BVJ6 771 aaKnown RBP27.56■■■□□ 2
COL9A3-207ENST00000467819 RNF123Q5XPI4 1314 aa27.56■■■□□ 2
COL9A3-207ENST00000467819 ADAMTSL1Q8N6G6 1762 aa27.55■■■□□ 2
COL9A3-207ENST00000467819 XAGE3Q8WTP9 111 aa27.55■■■□□ 2
COL9A3-207ENST00000467819 NLRP3Q96P20 1036 aa27.55■■■□□ 2
COL9A3-207ENST00000467819 CREBZFQ9NS37 354 aa27.54■■■□□ 2
COL9A3-207ENST00000467819 TRIM35Q9UPQ4 493 aa27.54■■■□□ 2
COL9A3-207ENST00000467819 CHL1O00533 1208 aa27.53■■■□□ 2
COL9A3-207ENST00000467819 EPHX2P34913 555 aa27.53■■■□□ 2
COL9A3-207ENST00000467819 CLEC11AQ9Y240 323 aa27.53■■■□□ 2
COL9A3-207ENST00000467819 HSP90AB3PQ58FF7 597 aa27.52■■■□□ 2
COL9A3-207ENST00000467819 COL13A1Q5TAT6 717 aaPredicted RBP27.52■■■□□ 2
COL9A3-207ENST00000467819 GPC2Q8N158 579 aa27.52■■■□□ 2
COL9A3-207ENST00000467819 LARGE2Q8N3Y3 721 aa27.52■■■□□ 2
COL9A3-207ENST00000467819 DDX21Q9NR30 783 aaKnown RBP eCLIP27.52■■■□□ 2
COL9A3-207ENST00000467819 MKRN1Q9UHC7 482 aaKnown RBP27.52■■■□□ 2
COL9A3-207ENST00000467819 ADAMTS8Q9UP79 889 aa27.52■■■□□ 2
COL9A3-207ENST00000467819 GJA3Q9Y6H8 435 aa27.52■■■□□ 2
COL9A3-207ENST00000467819 TAF1P21675 1872 aa27.51■■□□□ 1.99
COL9A3-207ENST00000467819 HSPA1AP0DMV8 641 aaKnown RBP27.51■■□□□ 1.99
COL9A3-207ENST00000467819 HSPA1BP0DMV9 641 aaKnown RBP27.51■■□□□ 1.99
COL9A3-207ENST00000467819 EIF6P56537 245 aaKnown RBP27.51■■□□□ 1.99
COL9A3-207ENST00000467819 GRIPAP1Q4V328 841 aa27.51■■□□□ 1.99
COL9A3-207ENST00000467819 LTBP1Q14766 1721 aa27.5■■□□□ 1.99
COL9A3-207ENST00000467819 PASKQ96RG2 1323 aa27.5■■□□□ 1.99
COL9A3-207ENST00000467819 SLC10A5Q5PT55 438 aa27.5■■□□□ 1.99
COL9A3-207ENST00000467819 NLRP10Q86W26 655 aa27.5■■□□□ 1.99
COL9A3-207ENST00000467819 CHPF2Q9P2E5 772 aa27.5■■□□□ 1.99
COL9A3-207ENST00000467819 ABCC4O15439 1325 aa27.49■■□□□ 1.99
COL9A3-207ENST00000467819 HCLS1P14317 486 aaPredicted RBP27.49■■□□□ 1.99
COL9A3-207ENST00000467819 TMX4Q9H1E5 349 aaPredicted RBP27.49■■□□□ 1.99
COL9A3-207ENST00000467819 DDX60Q8IY21 1712 aaKnown RBP27.47■■□□□ 1.99
COL9A3-207ENST00000467819 TCIRG1Q13488 830 aa27.47■■□□□ 1.99
COL9A3-207ENST00000467819 HDGFL1Q5TGJ6 251 aa27.47■■□□□ 1.99
COL9A3-207ENST00000467819 PNMA8AQ86V59 439 aaPredicted RBP27.47■■□□□ 1.99
COL9A3-207ENST00000467819 ZNF428Q96B54 188 aa27.47■■□□□ 1.99
COL9A3-207ENST00000467819 TRMT112Q9UI30 125 aaKnown RBP27.47■■□□□ 1.99
COL9A3-207ENST00000467819 ATP6V0A2Q9Y487 856 aa27.47■■□□□ 1.99
COL9A3-207ENST00000467819 PPIP5K2O43314 1243 aa27.46■■□□□ 1.99
COL9A3-207ENST00000467819 ITGBL1O95965 494 aaPredicted RBP27.46■■□□□ 1.99
COL9A3-207ENST00000467819 AOC3Q16853 763 aa27.45■■□□□ 1.98
COL9A3-207ENST00000467819 MAP1SQ66K74 1059 aaPredicted RBP27.45■■□□□ 1.98
COL9A3-207ENST00000467819 NIM1KQ8IY84 436 aa27.45■■□□□ 1.98
COL9A3-207ENST00000467819 LMOD1P29536 600 aaPredicted RBP27.44■■□□□ 1.98
COL9A3-207ENST00000467819 PRKRIP1Q9H875 184 aaPredicted RBP27.44■■□□□ 1.98
COL9A3-207ENST00000467819 CNTNAP1P78357 1384 aa27.44■■□□□ 1.98
COL9A3-207ENST00000467819 SH3TC1Q8TE82 1336 aa27.43■■□□□ 1.98
COL9A3-207ENST00000467819 TMEM88BA6NKF7 163 aa27.42■■□□□ 1.98
COL9A3-207ENST00000467819 HOXB7P09629 217 aa27.42■■□□□ 1.98
COL9A3-207ENST00000467819 DDX46Q7L014 1031 aaKnown RBP27.42■■□□□ 1.98
COL9A3-207ENST00000467819 CNTROBQ8N137 903 aa27.42■■□□□ 1.98
COL9A3-207ENST00000467819 CFAP44Q96MT7 982 aa27.42■■□□□ 1.98
COL9A3-207ENST00000467819 SCNN1DP51172 638 aa27.41■■□□□ 1.98
COL9A3-207ENST00000467819 PLBD2Q8NHP8 589 aa27.41■■□□□ 1.98
COL9A3-207ENST00000467819 DBF4Q9UBU7 674 aaPredicted RBP27.41■■□□□ 1.98
COL9A3-207ENST00000467819 BBOX1O75936 387 aa27.4■■□□□ 1.98
COL9A3-207ENST00000467819 EPS15P42566 896 aa27.4■■□□□ 1.98
COL9A3-207ENST00000467819 DUSP27Q5VZP5 1158 aa27.4■■□□□ 1.98
COL9A3-207ENST00000467819 DPP8Q6V1X1 898 aaPredicted RBP27.4■■□□□ 1.98
COL9A3-207ENST00000467819 SUPT20HQ8NEM7 779 aa27.4■■□□□ 1.98
COL9A3-207ENST00000467819 MBIPQ9NS73 344 aa27.4■■□□□ 1.98
COL9A3-207ENST00000467819 ANKRD13DQ6ZTN6 518 aa27.39■■□□□ 1.98
COL9A3-207ENST00000467819 SP8Q8IXZ3 490 aa27.39■■□□□ 1.98
COL9A3-207ENST00000467819 TNS4Q8IZW8 715 aa27.39■■□□□ 1.98
COL9A3-207ENST00000467819 LRRC37AA6NMS7 1700 aa27.38■■□□□ 1.97
COL9A3-207ENST00000467819 GRAPQ13588 217 aa27.38■■□□□ 1.97
COL9A3-207ENST00000467819 MPNDQ8N594 471 aa27.38■■□□□ 1.97
COL9A3-207ENST00000467819 GRAPLQ8TC17 118 aaPredicted RBP27.38■■□□□ 1.97
COL9A3-207ENST00000467819 RTFDC1Q9BY42 306 aaPredicted RBP27.38■■□□□ 1.97
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms