RNA–Protein interactions for RNA: ENST00000449544.5

HCG18-238, Transcript of HLA complex group 18, human

TSL 2 BASIC

Gene HCG18, Length 4,262 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HCG18-238	ENST00000449544	CHMP4BP1	P59074	171 aa		10.27	□□□□□ -0.77
HCG18-238	ENST00000449544	ZGPAT	Q8N5A5	531 aa	Known RBP	10.27	□□□□□ -0.77
HCG18-238	ENST00000449544	SYT17	Q9BSW7	474 aa		10.27	□□□□□ -0.77
HCG18-238	ENST00000449544	FSD1	Q9BTV5	496 aa		10.27	□□□□□ -0.77
HCG18-238	ENST00000449544	VEGFA	P15692	232 aa	Predicted RBP	10.27	□□□□□ -0.77
HCG18-238	ENST00000449544	RRP12	Q5JTH9	1297 aa	Known RBP	10.27	□□□□□ -0.77
HCG18-238	ENST00000449544	ZSCAN25	Q6NSZ9	544 aa		10.27	□□□□□ -0.77
HCG18-238	ENST00000449544	IL17RE	Q8NFR9	667 aa		10.27	□□□□□ -0.77
HCG18-238	ENST00000449544	NOB1	Q9ULX3	412 aa	Known RBP	10.27	□□□□□ -0.77
HCG18-238	ENST00000449544	TNFAIP1	Q13829	316 aa		10.27	□□□□□ -0.77
HCG18-238	ENST00000449544	VSIG10	Q8N0Z9	540 aa		10.26	□□□□□ -0.77
HCG18-238	ENST00000449544	LINS1	Q8NG48	757 aa		10.26	□□□□□ -0.77
HCG18-238	ENST00000449544	VTI1A	Q96AJ9	217 aa		10.26	□□□□□ -0.77
HCG18-238	ENST00000449544	RSPH6A	Q9H0K4	717 aa		10.26	□□□□□ -0.77
HCG18-238	ENST00000449544	USP19	O94966	1318 aa		10.26	□□□□□ -0.77
HCG18-238	ENST00000449544	MAP3K12	Q12852	859 aa		10.26	□□□□□ -0.77
HCG18-238	ENST00000449544	NFIX	Q14938	502 aa		10.26	□□□□□ -0.77
HCG18-238	ENST00000449544	CCDC191	Q8NCU4	936 aa		10.26	□□□□□ -0.77
HCG18-238	ENST00000449544	BRIP1	Q9BX63	1249 aa		10.26	□□□□□ -0.77
HCG18-238	ENST00000449544	PICK1	Q9NRD5	415 aa		10.26	□□□□□ -0.77
HCG18-238	ENST00000449544	CD2AP	Q9Y5K6	639 aa		10.26	□□□□□ -0.77
HCG18-238	ENST00000449544	PARD3	Q8TEW0	1356 aa		10.25	□□□□□ -0.77
HCG18-238	ENST00000449544	KCNQ3	O43525	872 aa		10.25	□□□□□ -0.77
HCG18-238	ENST00000449544	TMC4	Q7Z404	712 aa		10.25	□□□□□ -0.77
HCG18-238	ENST00000449544	RUFY2	Q8WXA3	655 aa		10.25	□□□□□ -0.77
HCG18-238	ENST00000449544	CPD	O75976	1380 aa		10.25	□□□□□ -0.77
HCG18-238	ENST00000449544	PICALM	Q13492	652 aa		10.25	□□□□□ -0.77
HCG18-238	ENST00000449544	MVP	Q14764	893 aa	Known RBP	10.25	□□□□□ -0.77
HCG18-238	ENST00000449544	TTLL7	Q6ZT98	887 aa		10.25	□□□□□ -0.77
HCG18-238	ENST00000449544	ZNF287	Q9HBT7	754 aa		10.25	□□□□□ -0.77
HCG18-238	ENST00000449544	ZNF277	Q9NRM2	450 aa	Predicted RBP	10.25	□□□□□ -0.77
HCG18-238	ENST00000449544	GSTO1	P78417	241 aa		10.25	□□□□□ -0.77
HCG18-238	ENST00000449544	RALYL	Q86SE5	291 aa	Known RBP	10.25	□□□□□ -0.77
HCG18-238	ENST00000449544	AACS	Q86V21	672 aa		10.25	□□□□□ -0.77
HCG18-238	ENST00000449544	MAP3K15	Q6ZN16	1313 aa		10.25	□□□□□ -0.77
HCG18-238	ENST00000449544	TDO2	P48775	406 aa		10.24	□□□□□ -0.77
HCG18-238	ENST00000449544	CLEC4G	Q6UXB4	293 aa		10.24	□□□□□ -0.77
HCG18-238	ENST00000449544	UNC13B	O14795	1591 aa		10.24	□□□□□ -0.77
HCG18-238	ENST00000449544	LMNB1	P20700	586 aa		10.24	□□□□□ -0.77
HCG18-238	ENST00000449544	GTF2I	P78347	998 aa		10.24	□□□□□ -0.77
HCG18-238	ENST00000449544	RC3H1	Q5TC82	1133 aa	Known RBP	10.24	□□□□□ -0.77
HCG18-238	ENST00000449544	MKNK2	Q9HBH9	465 aa		10.24	□□□□□ -0.77
HCG18-238	ENST00000449544	ATP2B3	Q16720	1220 aa		10.24	□□□□□ -0.77
HCG18-238	ENST00000449544	KRT24	Q2M2I5	525 aa		10.24	□□□□□ -0.77
HCG18-238	ENST00000449544	CWF19L2	Q2TBE0	894 aa	Known RBP	10.24	□□□□□ -0.77
HCG18-238	ENST00000449544	NFXL1	Q6ZNB6	911 aa		10.24	□□□□□ -0.77
HCG18-238	ENST00000449544	KIAA0825	Q8IV33	1275 aa		10.24	□□□□□ -0.77
HCG18-238	ENST00000449544	NRXN1	Q9ULB1	1477 aa		10.24	□□□□□ -0.77
HCG18-238	ENST00000449544	SPHKAP	Q2M3C7	1700 aa		10.24	□□□□□ -0.77
HCG18-238	ENST00000449544	GRM8	O00222	908 aa		10.24	□□□□□ -0.77
HCG18-238	ENST00000449544	TGFB2	P61812	414 aa		10.24	□□□□□ -0.77
HCG18-238	ENST00000449544	SMCR8	Q8TEV9	937 aa	Predicted RBP	10.24	□□□□□ -0.77
HCG18-238	ENST00000449544	DBNDD1	Q9H9R9	158 aa		10.24	□□□□□ -0.77
HCG18-238	ENST00000449544	ARMC9	Q7Z3E5	817 aa		10.23	□□□□□ -0.77
HCG18-238	ENST00000449544	CHMP4C	Q96CF2	233 aa		10.23	□□□□□ -0.77
HCG18-238	ENST00000449544	HIBADH	P31937	336 aa	Known RBP	10.23	□□□□□ -0.77
HCG18-238	ENST00000449544	C1orf115	Q9H7X2	142 aa		10.23	□□□□□ -0.77
HCG18-238	ENST00000449544	BABAM1	Q9NWV8	329 aa		10.23	□□□□□ -0.77
HCG18-238	ENST00000449544	CROCC2	H7BZ55	1655 aa		10.23	□□□□□ -0.77
HCG18-238	ENST00000449544	CT47B1	P0C2W7	299 aa	Predicted RBP	10.23	□□□□□ -0.77
HCG18-238	ENST00000449544	ATP2B4	P23634	1241 aa		10.23	□□□□□ -0.77
HCG18-238	ENST00000449544	MFAP1	P55081	439 aa	Known RBP	10.23	□□□□□ -0.77
HCG18-238	ENST00000449544	GIGYF2	Q6Y7W6	1299 aa	Known RBP	10.23	□□□□□ -0.77
HCG18-238	ENST00000449544	SYNE4	Q8N205	404 aa		10.23	□□□□□ -0.77
HCG18-238	ENST00000449544	HACL1	Q9UJ83	578 aa		10.23	□□□□□ -0.77
HCG18-238	ENST00000449544	ITGA6	P23229	1130 aa		10.22	□□□□□ -0.77
HCG18-238	ENST00000449544	TTLL5	Q6EMB2	1281 aa		10.22	□□□□□ -0.77
HCG18-238	ENST00000449544	CPLX2	Q6PUV4	134 aa	Known RBP	10.22	□□□□□ -0.77
HCG18-238	ENST00000449544	ERBB4	Q15303	1308 aa		10.22	□□□□□ -0.77
HCG18-238	ENST00000449544	COL15A1	P39059	1388 aa		10.22	□□□□□ -0.77
HCG18-238	ENST00000449544	GRIPAP1	Q4V328	841 aa		10.22	□□□□□ -0.77
HCG18-238	ENST00000449544		E9PCH4	1651 aa		10.22	□□□□□ -0.77
HCG18-238	ENST00000449544	LDHB	P07195	334 aa	Known RBP	10.22	□□□□□ -0.77
HCG18-238	ENST00000449544	EIF4A1	P60842	406 aa	Known RBP	10.22	□□□□□ -0.77
HCG18-238	ENST00000449544	CCDC43	Q96MW1	224 aa	Known RBP	10.22	□□□□□ -0.77
HCG18-238	ENST00000449544	SNRK	Q9NRH2	765 aa		10.22	□□□□□ -0.77
HCG18-238	ENST00000449544	ECE1	P42892	770 aa		10.21	□□□□□ -0.77
HCG18-238	ENST00000449544	PRPF40B	Q6NWY9	871 aa	Known RBP	10.21	□□□□□ -0.77
HCG18-238	ENST00000449544	LINC00116	Q8NCU8	138 aa		10.21	□□□□□ -0.77
HCG18-238	ENST00000449544	CDCA7L	Q96GN5	454 aa		10.21	□□□□□ -0.77
HCG18-238	ENST00000449544	NEXMIF	Q5QGS0	1516 aa		10.21	□□□□□ -0.77
HCG18-238	ENST00000449544	CARMIL3	Q8ND23	1372 aa		10.21	□□□□□ -0.77
HCG18-238	ENST00000449544	MYC	P01106	439 aa	Predicted RBP	10.21	□□□□□ -0.77
HCG18-238	ENST00000449544	HOXB7	P09629	217 aa		10.21	□□□□□ -0.77
HCG18-238	ENST00000449544	CDK11B	P21127	795 aa	Known RBP	10.21	□□□□□ -0.77
HCG18-238	ENST00000449544	SART3	Q15020	963 aa	Known RBP	10.21	□□□□□ -0.77
HCG18-238	ENST00000449544	SUPT20HL1	Q3ZLR7	823 aa		10.21	□□□□□ -0.77
HCG18-238	ENST00000449544	MAST3	O60307	1309 aa		10.21	□□□□□ -0.77
HCG18-238	ENST00000449544	USP31	Q70CQ4	1352 aa		10.21	□□□□□ -0.77
HCG18-238	ENST00000449544	BCAR3	O75815	825 aa		10.21	□□□□□ -0.78
HCG18-238	ENST00000449544	ALDH1L1	O75891	902 aa		10.21	□□□□□ -0.78
HCG18-238	ENST00000449544	PHAX	Q9H814	394 aa	Known RBP	10.21	□□□□□ -0.78
HCG18-238	ENST00000449544	MKRN3	Q13064	507 aa	Known RBP	10.21	□□□□□ -0.78
HCG18-238	ENST00000449544	PNMA8A	Q86V59	439 aa	Predicted RBP	10.21	□□□□□ -0.78
HCG18-238	ENST00000449544	IL1RAPL2	Q9NP60	686 aa		10.21	□□□□□ -0.78
HCG18-238	ENST00000449544	MINDY4B	A8MYZ0	360 aa		10.2	□□□□□ -0.78
HCG18-238	ENST00000449544	FAM161A	Q3B820	660 aa		10.2	□□□□□ -0.78
HCG18-238	ENST00000449544	USP48	Q86UV5	1035 aa		10.2	□□□□□ -0.78
HCG18-238	ENST00000449544	PANK1	Q8TE04	598 aa		10.2	□□□□□ -0.78
HCG18-238	ENST00000449544	IVNS1ABP	Q9Y6Y0	642 aa		10.2	□□□□□ -0.78

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