RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-205ENST00000399494 GIGYF2Q6Y7W6 1299 aaKnown RBP37.48■■■■□ 3.59
HMGB1-205ENST00000399494 MKRN1Q9UHC7 482 aaKnown RBP37.48■■■■□ 3.59
HMGB1-205ENST00000399494 IBTKQ9P2D0 1353 aaPredicted RBP37.47■■■■□ 3.59
HMGB1-205ENST00000399494 ERBB4Q15303 1308 aa37.47■■■■□ 3.59
HMGB1-205ENST00000399494 ITGBL1O95965 494 aaPredicted RBP37.47■■■■□ 3.59
HMGB1-205ENST00000399494 RIC1Q4ADV7 1423 aa37.46■■■■□ 3.59
HMGB1-205ENST00000399494 TNS4Q8IZW8 715 aa37.46■■■■□ 3.59
HMGB1-205ENST00000399494 RPGRQ92834 1020 aaKnown RBP37.46■■■■□ 3.59
HMGB1-205ENST00000399494 EAPPQ56P03 285 aaPredicted RBP37.45■■■■□ 3.59
HMGB1-205ENST00000399494 TSPYL4Q9UJ04 414 aa37.45■■■■□ 3.59
HMGB1-205ENST00000399494 NTSR2O95665 410 aa37.44■■■■□ 3.58
HMGB1-205ENST00000399494 EPHX2P34913 555 aa37.44■■■■□ 3.58
HMGB1-205ENST00000399494 PDIA6Q15084 440 aa37.44■■■■□ 3.58
HMGB1-205ENST00000399494 LRP10Q7Z4F1 713 aa37.44■■■■□ 3.58
HMGB1-205ENST00000399494 JDP2Q8WYK2 163 aa37.44■■■■□ 3.58
HMGB1-205ENST00000399494 RIPK4P57078 832 aa37.43■■■■□ 3.58
HMGB1-205ENST00000399494 GPC2Q8N158 579 aa37.43■■■■□ 3.58
HMGB1-205ENST00000399494 CRAMP1Q96RY5 1269 aa37.43■■■■□ 3.58
HMGB1-205ENST00000399494 RBM17Q96I25 401 aaKnown RBP37.42■■■■□ 3.58
HMGB1-205ENST00000399494 CLEC11AQ9Y240 323 aa37.42■■■■□ 3.58
HMGB1-205ENST00000399494 RNF123Q5XPI4 1314 aa37.41■■■■□ 3.58
HMGB1-205ENST00000399494 GRIPAP1Q4V328 841 aa37.41■■■■□ 3.58
HMGB1-205ENST00000399494 PNMA8AQ86V59 439 aaPredicted RBP37.41■■■■□ 3.58
HMGB1-205ENST00000399494 PRKRIP1Q9H875 184 aaPredicted RBP37.41■■■■□ 3.58
HMGB1-205ENST00000399494 C3orf67Q6ZVT6 689 aa37.4■■■■□ 3.58
HMGB1-205ENST00000399494 PPP1R42Q7Z4L9 355 aa37.4■■■■□ 3.58
HMGB1-205ENST00000399494 CNTNAP1P78357 1384 aa37.4■■■■□ 3.58
HMGB1-205ENST00000399494 EIF2S2P20042 333 aaKnown RBP37.39■■■■□ 3.58
HMGB1-205ENST00000399494 PARP10Q53GL7 1025 aa37.39■■■■□ 3.58
HMGB1-205ENST00000399494 BABAM1Q9NWV8 329 aa37.39■■■■□ 3.58
HMGB1-205ENST00000399494 ADAMTSL1Q8N6G6 1762 aa37.37■■■■□ 3.57
HMGB1-205ENST00000399494 TMEM88BA6NKF7 163 aa37.37■■■■□ 3.57
HMGB1-205ENST00000399494 SLC51AQ86UW1 340 aa37.37■■■■□ 3.57
HMGB1-205ENST00000399494 COL4A5P29400 1685 aa37.37■■■■□ 3.57
HMGB1-205ENST00000399494 TMPOP42166 694 aaKnown RBP37.36■■■■□ 3.57
HMGB1-205ENST00000399494 EIF6P56537 245 aaKnown RBP37.36■■■■□ 3.57
HMGB1-205ENST00000399494 PROSER3Q2NL68 480 aa37.36■■■■□ 3.57
HMGB1-205ENST00000399494 SLC10A5Q5PT55 438 aa37.36■■■■□ 3.57
HMGB1-205ENST00000399494 PPEF1O14829 653 aaPredicted RBP37.35■■■■□ 3.57
HMGB1-205ENST00000399494 CNTROBQ8N137 903 aa37.35■■■■□ 3.57
HMGB1-205ENST00000399494 NLRP3Q96P20 1036 aa37.35■■■■□ 3.57
HMGB1-205ENST00000399494 TCERG1O14776 1098 aaKnown RBP37.34■■■■□ 3.57
HMGB1-205ENST00000399494 ANXA1P04083 346 aa37.34■■■■□ 3.57
HMGB1-205ENST00000399494 GJA3Q9Y6H8 435 aa37.34■■■■□ 3.57
HMGB1-205ENST00000399494 MAP1SQ66K74 1059 aaPredicted RBP37.33■■■■□ 3.57
HMGB1-205ENST00000399494 UTP14AQ9BVJ6 771 aaKnown RBP37.33■■■■□ 3.57
HMGB1-205ENST00000399494 CAPN15O75808 1086 aa37.32■■■■□ 3.56
HMGB1-205ENST00000399494 LARGE2Q8N3Y3 721 aa37.32■■■■□ 3.56
HMGB1-205ENST00000399494 VEGFBP49765 207 aa37.31■■■■□ 3.56
HMGB1-205ENST00000399494 LMOD3Q0VAK6 560 aa37.29■■■■□ 3.56
HMGB1-205ENST00000399494 ATP6V0A2Q9Y487 856 aa37.29■■■■□ 3.56
HMGB1-205ENST00000399494 COPS6Q7L5N1 327 aa37.28■■■■□ 3.56
HMGB1-205ENST00000399494 NECTIN2Q92692 538 aa37.27■■■■□ 3.56
HMGB1-205ENST00000399494 EPS15P42566 896 aa37.26■■■■□ 3.56
HMGB1-205ENST00000399494 SCNN1DP51172 638 aa37.26■■■■□ 3.56
HMGB1-205ENST00000399494 FOXN1O15353 648 aa37.25■■■■□ 3.55
HMGB1-205ENST00000399494 LMOD1P29536 600 aaPredicted RBP37.25■■■■□ 3.55
HMGB1-205ENST00000399494 AIMP1Q12904 312 aaKnown RBP37.25■■■■□ 3.55
HMGB1-205ENST00000399494 XAGE3Q8WTP9 111 aa37.25■■■■□ 3.55
HMGB1-205ENST00000399494 VPS33BQ9H267 617 aa37.25■■■■□ 3.55
HMGB1-205ENST00000399494 CHL1O00533 1208 aa37.24■■■■□ 3.55
HMGB1-205ENST00000399494 NLRP10Q86W26 655 aa37.24■■■■□ 3.55
HMGB1-205ENST00000399494 NIM1KQ8IY84 436 aa37.24■■■■□ 3.55
HMGB1-205ENST00000399494 TMX4Q9H1E5 349 aaPredicted RBP37.24■■■■□ 3.55
HMGB1-205ENST00000399494 LTBP1Q14766 1721 aa37.24■■■■□ 3.55
HMGB1-205ENST00000399494 ABCC4O15439 1325 aa37.23■■■■□ 3.55
HMGB1-205ENST00000399494 HSP90AB3PQ58FF7 597 aa37.23■■■■□ 3.55
HMGB1-205ENST00000399494 RASSF10A6NK89 507 aa37.22■■■■□ 3.55
HMGB1-205ENST00000399494 PPIP5K2O43314 1243 aa37.22■■■■□ 3.55
HMGB1-205ENST00000399494 ANP32CO43423 234 aa37.22■■■■□ 3.55
HMGB1-205ENST00000399494 TCIRG1Q13488 830 aa37.22■■■■□ 3.55
HMGB1-205ENST00000399494 NEUROD2Q15784 382 aa37.22■■■■□ 3.55
HMGB1-205ENST00000399494 AOC3Q16853 763 aa37.22■■■■□ 3.55
HMGB1-205ENST00000399494 DEFB115Q30KQ5 88 aa37.22■■■■□ 3.55
HMGB1-205ENST00000399494 BBOX1O75936 387 aa37.21■■■■□ 3.55
HMGB1-205ENST00000399494 CCDC146Q8IYE0 955 aa37.21■■■■□ 3.55
HMGB1-205ENST00000399494 RTFDC1Q9BY42 306 aaPredicted RBP37.21■■■■□ 3.55
HMGB1-205ENST00000399494 DDX21Q9NR30 783 aaKnown RBP eCLIP37.21■■■■□ 3.55
HMGB1-205ENST00000399494 HCLS1P14317 486 aaPredicted RBP37.2■■■■□ 3.55
HMGB1-205ENST00000399494 WDR43Q15061 677 aaKnown RBP eCLIP37.2■■■■□ 3.55
HMGB1-205ENST00000399494 KRT24Q2M2I5 525 aa37.2■■■■□ 3.55
HMGB1-205ENST00000399494 SP8Q8IXZ3 490 aa37.2■■■■□ 3.55
HMGB1-205ENST00000399494 USP50Q70EL3 339 aaPredicted RBP37.19■■■■□ 3.54
HMGB1-205ENST00000399494 TRIM35Q9UPQ4 493 aa37.19■■■■□ 3.54
HMGB1-205ENST00000399494 SUPT20HQ8NEM7 779 aa37.18■■■■□ 3.54
HMGB1-205ENST00000399494 WBP1LQ9NX94 342 aa37.18■■■■□ 3.54
HMGB1-205ENST00000399494 TRMT112Q9UI30 125 aaKnown RBP37.18■■■■□ 3.54
HMGB1-205ENST00000399494 PRDM10Q9NQV6 1147 aa37.17■■■■□ 3.54
HMGB1-205ENST00000399494 FMR1Q06787 632 aaKnown RBP eCLIP37.16■■■■□ 3.54
HMGB1-205ENST00000399494 RUNDC1Q96C34 613 aa37.16■■■■□ 3.54
HMGB1-205ENST00000399494 ZNRF3Q9ULT6 936 aa37.16■■■■□ 3.54
HMGB1-205ENST00000399494 ANKRD36CQ5JPF3 1778 aa37.15■■■■□ 3.54
HMGB1-205ENST00000399494 CXCL9Q07325 125 aa37.15■■■■□ 3.54
HMGB1-205ENST00000399494 LAS1LQ9Y4W2 734 aaKnown RBP37.15■■■■□ 3.54
HMGB1-205ENST00000399494 CTCFP49711 727 aaPredicted RBP37.14■■■■□ 3.54
HMGB1-205ENST00000399494 DPP8Q6V1X1 898 aaPredicted RBP37.14■■■■□ 3.54
HMGB1-205ENST00000399494 MPNDQ8N594 471 aa37.14■■■■□ 3.54
HMGB1-205ENST00000399494 AIDAQ96BJ3 306 aa37.14■■■■□ 3.54
HMGB1-205ENST00000399494 SH3TC1Q8TE82 1336 aa37.13■■■■□ 3.54
HMGB1-205ENST00000399494 DDX46Q7L014 1031 aaKnown RBP37.13■■■■□ 3.53
Retrieved 100 of 20,778 RNA–protein pairs in 77.1 ms