RNA–Protein interactions for RNA: ENST00000375692.5

CLCNKA-202, Transcript of chloride voltage-gated channel Ka, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CLCNKA, Length 2,581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-202ENST00000375692 VPS37CA5D8V6 355 aaPredicted RBP16.87■□□□□ 0.29
CLCNKA-202ENST00000375692 UBAP1LF5GYI3 381 aa16.87■□□□□ 0.29
CLCNKA-202ENST00000375692 PRIMPOLQ96LW4 560 aa16.87■□□□□ 0.29
CLCNKA-202ENST00000375692 STRN4Q9NRL3 753 aa16.87■□□□□ 0.29
CLCNKA-202ENST00000375692 PDRG1Q9NUG6 133 aa16.87■□□□□ 0.29
CLCNKA-202ENST00000375692 COL18A1P39060 1754 aa16.87■□□□□ 0.29
CLCNKA-202ENST00000375692 PI4KAP2A4QPH2 592 aa16.87■□□□□ 0.29
CLCNKA-202ENST00000375692 OS9Q13438 667 aaPredicted RBP16.87■□□□□ 0.29
CLCNKA-202ENST00000375692 PI4KAP1Q8N8J0 262 aa16.87■□□□□ 0.29
CLCNKA-202ENST00000375692 DIAPH3Q9NSV4 1193 aa16.87■□□□□ 0.29
CLCNKA-202ENST00000375692 PYCARDQ9ULZ3 195 aa16.87■□□□□ 0.29
CLCNKA-202ENST00000375692 TOM1O60784 492 aa16.86■□□□□ 0.29
CLCNKA-202ENST00000375692 ST3GAL1Q11201 340 aa16.86■□□□□ 0.29
CLCNKA-202ENST00000375692 COL9A3Q14050 684 aaPredicted RBP16.86■□□□□ 0.29
CLCNKA-202ENST00000375692 ZNF530Q6P9A1 599 aaPredicted RBP16.86■□□□□ 0.29
CLCNKA-202ENST00000375692 MPRIPQ6WCQ1 1025 aa16.86■□□□□ 0.29
CLCNKA-202ENST00000375692 KCNF1Q9H3M0 494 aa16.86■□□□□ 0.29
CLCNKA-202ENST00000375692 SPTLC3Q9NUV7 552 aa16.86■□□□□ 0.29
CLCNKA-202ENST00000375692 ATP6V1DQ9Y5K8 247 aa16.86■□□□□ 0.29
CLCNKA-202ENST00000375692 MAP3K5Q99683 1374 aa16.86■□□□□ 0.29
CLCNKA-202ENST00000375692 CAMTA1Q9Y6Y1 1673 aa16.86■□□□□ 0.29
CLCNKA-202ENST00000375692 FAM173BQ6P4H8 233 aa16.86■□□□□ 0.29
CLCNKA-202ENST00000375692 CHPF2Q9P2E5 772 aa16.86■□□□□ 0.29
CLCNKA-202ENST00000375692 CCDC94Q9BW85 323 aaPredicted RBP16.85■□□□□ 0.29
CLCNKA-202ENST00000375692 HMGN5P82970 282 aaKnown RBP16.85■□□□□ 0.29
CLCNKA-202ENST00000375692 ME3Q16798 604 aa16.85■□□□□ 0.29
CLCNKA-202ENST00000375692 BEND3Q5T5X7 828 aa16.85■□□□□ 0.29
CLCNKA-202ENST00000375692 KCNQ3O43525 872 aa16.84■□□□□ 0.29
CLCNKA-202ENST00000375692 PLEKHO1Q53GL0 409 aaPredicted RBP16.84■□□□□ 0.29
CLCNKA-202ENST00000375692 FERMT3Q86UX7 667 aa16.84■□□□□ 0.29
CLCNKA-202ENST00000375692 CAMK4Q16566 473 aa16.84■□□□□ 0.29
CLCNKA-202ENST00000375692 LARP1Q6PKG0 1096 aaKnown RBP16.84■□□□□ 0.29
CLCNKA-202ENST00000375692 TOM1L2Q6ZVM7 507 aa16.84■□□□□ 0.29
CLCNKA-202ENST00000375692 GLRX3O76003 335 aaKnown RBP16.84■□□□□ 0.29
CLCNKA-202ENST00000375692 VPS53Q5VIR6 699 aa16.84■□□□□ 0.29
CLCNKA-202ENST00000375692 KIAA1524Q8TCG1 905 aa16.84■□□□□ 0.29
CLCNKA-202ENST00000375692 DNAAF4Q8WXU2 420 aa16.84■□□□□ 0.29
CLCNKA-202ENST00000375692 RAPGEF4Q8WZA2 1011 aa16.84■□□□□ 0.29
CLCNKA-202ENST00000375692 PA2G4Q9UQ80 394 aaKnown RBP16.84■□□□□ 0.29
CLCNKA-202ENST00000375692 CYP46A1Q9Y6A2 500 aa16.84■□□□□ 0.29
CLCNKA-202ENST00000375692 ZSWIM6Q9HCJ5 1215 aa16.83■□□□□ 0.28
CLCNKA-202ENST00000375692 KIF3AQ9Y496 699 aa16.83■□□□□ 0.28
CLCNKA-202ENST00000375692 PXDNLA1KZ92 1463 aa16.83■□□□□ 0.28
CLCNKA-202ENST00000375692 NCAPD2Q15021 1401 aa16.83■□□□□ 0.28
CLCNKA-202ENST00000375692 ADAMTS2O95450 1211 aa16.83■□□□□ 0.28
CLCNKA-202ENST00000375692 GTF2F1P35269 517 aaKnown RBP eCLIP16.83■□□□□ 0.28
CLCNKA-202ENST00000375692 TTC6Q86TZ1 520 aa16.82■□□□□ 0.28
CLCNKA-202ENST00000375692 SMAP1Q8IYB5 467 aaPredicted RBP16.82■□□□□ 0.28
CLCNKA-202ENST00000375692 TCEANC2Q96MN5 208 aa16.82■□□□□ 0.28
CLCNKA-202ENST00000375692 BTG4Q9NY30 223 aa16.82■□□□□ 0.28
CLCNKA-202ENST00000375692 TPCN1Q9ULQ1 816 aa16.82■□□□□ 0.28
CLCNKA-202ENST00000375692 NUTM2BA6NNL0 878 aaPredicted RBP16.82■□□□□ 0.28
CLCNKA-202ENST00000375692 NUTM2EB1AL46 878 aaPredicted RBP16.82■□□□□ 0.28
CLCNKA-202ENST00000375692 LIG1P18858 919 aa16.82■□□□□ 0.28
CLCNKA-202ENST00000375692 EVA1CP58658 441 aa16.82■□□□□ 0.28
CLCNKA-202ENST00000375692 NUTM2AQ8IVF1 878 aaPredicted RBP16.82■□□□□ 0.28
CLCNKA-202ENST00000375692 LRRC37A3O60309 1634 aa16.81■□□□□ 0.28
CLCNKA-202ENST00000375692 EIF4A1P60842 406 aaKnown RBP16.81■□□□□ 0.28
CLCNKA-202ENST00000375692 LARP1BQ659C4 914 aaKnown RBP16.81■□□□□ 0.28
CLCNKA-202ENST00000375692 CLASRPQ8N2M8 674 aaKnown RBP16.81■□□□□ 0.28
CLCNKA-202ENST00000375692 RUFY2Q8WXA3 655 aa16.81■□□□□ 0.28
CLCNKA-202ENST00000375692 BCL2L12Q9HB09 334 aa16.81■□□□□ 0.28
CLCNKA-202ENST00000375692 MEGF6O75095 1541 aa16.81■□□□□ 0.28
CLCNKA-202ENST00000375692 CACNA1FO60840 1977 aa16.81■□□□□ 0.28
CLCNKA-202ENST00000375692 CBX1P83916 185 aa16.81■□□□□ 0.28
CLCNKA-202ENST00000375692 NECTIN1Q15223 517 aa16.81■□□□□ 0.28
CLCNKA-202ENST00000375692 CDC37L1Q7L3B6 337 aa16.81■□□□□ 0.28
CLCNKA-202ENST00000375692 ZSCAN31Q96LW9 406 aaPredicted RBP16.81■□□□□ 0.28
CLCNKA-202ENST00000375692 FAM227BQ96M60 508 aa16.81■□□□□ 0.28
CLCNKA-202ENST00000375692 ECHDC1Q9NTX5 307 aa16.81■□□□□ 0.28
CLCNKA-202ENST00000375692 TTC41PQ6P2S7 1318 aa16.8■□□□□ 0.28
CLCNKA-202ENST00000375692 WDR17Q8IZU2 1322 aa16.8■□□□□ 0.28
CLCNKA-202ENST00000375692 CCDC192P0DO97 292 aa16.8■□□□□ 0.28
CLCNKA-202ENST00000375692 AMOTQ4VCS5 1084 aa16.8■□□□□ 0.28
CLCNKA-202ENST00000375692 HSP90AB4PQ58FF6 505 aa16.8■□□□□ 0.28
CLCNKA-202ENST00000375692 AKAP4Q5JQC9 854 aa16.8■□□□□ 0.28
CLCNKA-202ENST00000375692 SH2B1Q9NRF2 756 aaPredicted RBP16.8■□□□□ 0.28
CLCNKA-202ENST00000375692 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP16.8■□□□□ 0.28
CLCNKA-202ENST00000375692 USP42Q9H9J4 1324 aaKnown RBP16.8■□□□□ 0.28
CLCNKA-202ENST00000375692 TATP17735 454 aaPredicted RBP16.8■□□□□ 0.28
CLCNKA-202ENST00000375692 KCNJ4P48050 445 aa16.8■□□□□ 0.28
CLCNKA-202ENST00000375692 LUZP1Q86V48 1076 aa16.8■□□□□ 0.28
CLCNKA-202ENST00000375692 CKAP2LQ8IYA6 745 aa16.8■□□□□ 0.28
CLCNKA-202ENST00000375692 BABAM1Q9NWV8 329 aa16.8■□□□□ 0.28
CLCNKA-202ENST00000375692 RBM8AQ9Y5S9 174 aaKnown RBP16.8■□□□□ 0.28
CLCNKA-202ENST00000375692 COL5A2P05997 1499 aaPredicted RBP16.79■□□□□ 0.28
CLCNKA-202ENST00000375692 RIOK3O14730 519 aaKnown RBP16.79■□□□□ 0.28
CLCNKA-202ENST00000375692 PTGS1P23219 599 aa16.79■□□□□ 0.28
CLCNKA-202ENST00000375692 C1orf141Q5JVX7 400 aa16.79■□□□□ 0.28
CLCNKA-202ENST00000375692 PPP4R3BQ5MIZ7 849 aa16.79■□□□□ 0.28
CLCNKA-202ENST00000375692 CREB3L3Q68CJ9 461 aa16.79■□□□□ 0.28
CLCNKA-202ENST00000375692 TFIP11Q9UBB9 837 aaKnown RBP16.79■□□□□ 0.28
CLCNKA-202ENST00000375692 IFIT2P09913 472 aaKnown RBP16.79■□□□□ 0.28
CLCNKA-202ENST00000375692 ATP2B3Q16720 1220 aa16.79■□□□□ 0.28
CLCNKA-202ENST00000375692 TM6SF1Q9BZW5 370 aa16.79■□□□□ 0.28
CLCNKA-202ENST00000375692 TAF6LQ9Y6J9 622 aa16.79■□□□□ 0.28
CLCNKA-202ENST00000375692 ABCA3Q99758 1704 aa16.78■□□□□ 0.28
CLCNKA-202ENST00000375692 AHDC1Q5TGY3 1603 aaPredicted RBP16.78■□□□□ 0.28
CLCNKA-202ENST00000375692 CCDC171Q6TFL3 1326 aa16.78■□□□□ 0.28
CLCNKA-202ENST00000375692 MRVI1Q9Y6F6 885 aa16.78■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms