RNA–Protein interactions for RNA: ENST00000334389.5

LINC00643-201, long intergenic non-protein coding RNA 643, humanhuman

TSL 2 BASIC

Gene LINC00643, Length 3,247 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-201ENST00000334389 A0A1B0GUL7 405 aa2.48□□□□□ -2.01
LINC00643-201ENST00000334389 HSP90AB1P08238 724 aaKnown RBP2.48□□□□□ -2.01
LINC00643-201ENST00000334389 NOGQ13253 232 aa2.48□□□□□ -2.01
LINC00643-201ENST00000334389 TMED8Q6PL24 325 aaPredicted RBP2.48□□□□□ -2.01
LINC00643-201ENST00000334389 MTMR14Q8NCE2 650 aa2.48□□□□□ -2.01
LINC00643-201ENST00000334389 SNX27Q96L92 541 aa2.48□□□□□ -2.01
LINC00643-201ENST00000334389 TTC21BQ7Z4L5 1316 aa2.48□□□□□ -2.01
LINC00643-201ENST00000334389 ZNF644Q9H582 1327 aaPredicted RBP2.48□□□□□ -2.01
LINC00643-201ENST00000334389 HOXA10P31260 410 aaPredicted RBP2.48□□□□□ -2.01
LINC00643-201ENST00000334389 SMAD3P84022 425 aaKnown RBP2.48□□□□□ -2.01
LINC00643-201ENST00000334389 GPC2Q8N158 579 aa2.48□□□□□ -2.01
LINC00643-201ENST00000334389 ATXN2LQ8WWM7 1075 aaKnown RBP2.48□□□□□ -2.01
LINC00643-201ENST00000334389 CRISPLD2Q9H0B8 497 aa2.48□□□□□ -2.01
LINC00643-201ENST00000334389 BABAM1Q9NWV8 329 aa2.48□□□□□ -2.01
LINC00643-201ENST00000334389 KIF26AQ9ULI4 1882 aaPredicted RBP2.48□□□□□ -2.01
LINC00643-201ENST00000334389 HEG1Q9ULI3 1381 aa2.48□□□□□ -2.01
LINC00643-201ENST00000334389 TMEM8BA6NDV4 472 aa2.47□□□□□ -2.01
LINC00643-201ENST00000334389 DDB1Q16531 1140 aa2.47□□□□□ -2.01
LINC00643-201ENST00000334389 VARS2Q5ST30 1063 aaKnown RBP2.47□□□□□ -2.01
LINC00643-201ENST00000334389 KRTAP1-3Q8IUG1 177 aa2.47□□□□□ -2.01
LINC00643-201ENST00000334389 IP6K1Q92551 441 aa2.47□□□□□ -2.01
LINC00643-201ENST00000334389 COL6A1P12109 1028 aa2.47□□□□□ -2.01
LINC00643-201ENST00000334389 PDE3BQ13370 1112 aa2.47□□□□□ -2.01
LINC00643-201ENST00000334389 AKAP4Q5JQC9 854 aa2.47□□□□□ -2.01
LINC00643-201ENST00000334389 KRTAP9-2Q9BYQ4 174 aa2.47□□□□□ -2.01
LINC00643-201ENST00000334389 BTG4Q9NY30 223 aa2.47□□□□□ -2.01
LINC00643-201ENST00000334389 GREB1LQ9C091 1923 aaPredicted RBP2.47□□□□□ -2.01
LINC00643-201ENST00000334389 KIAA1549LQ6ZVL6 1849 aa2.47□□□□□ -2.01
LINC00643-201ENST00000334389 COL4A2P08572 1712 aa2.47□□□□□ -2.01
LINC00643-201ENST00000334389 RPS6KA4O75676 772 aa2.47□□□□□ -2.01
LINC00643-201ENST00000334389 MAP4K4O95819 1239 aaPredicted RBP2.47□□□□□ -2.01
LINC00643-201ENST00000334389 C1RP00736 705 aa2.47□□□□□ -2.01
LINC00643-201ENST00000334389 IL2RBP14784 551 aa2.47□□□□□ -2.01
LINC00643-201ENST00000334389 SDHBP21912 280 aa2.47□□□□□ -2.01
LINC00643-201ENST00000334389 SNRNP27Q8WVK2 155 aaKnown RBP2.47□□□□□ -2.01
LINC00643-201ENST00000334389 RSPH6AQ9H0K4 717 aa2.47□□□□□ -2.01
LINC00643-201ENST00000334389 ATG2AQ2TAZ0 1938 aa2.47□□□□□ -2.01
LINC00643-201ENST00000334389 USP42Q9H9J4 1324 aaKnown RBP2.47□□□□□ -2.01
LINC00643-201ENST00000334389 ATRNL1Q5VV63 1379 aa2.46□□□□□ -2.02
LINC00643-201ENST00000334389 CLEC4GQ6UXB4 293 aa2.46□□□□□ -2.02
LINC00643-201ENST00000334389 DPF2Q92785 391 aa2.46□□□□□ -2.02
LINC00643-201ENST00000334389 ORAI2Q96SN7 254 aa2.46□□□□□ -2.02
LINC00643-201ENST00000334389 NRBP1Q9UHY1 535 aa2.46□□□□□ -2.02
LINC00643-201ENST00000334389 CARMIL3Q8ND23 1372 aa2.46□□□□□ -2.02
LINC00643-201ENST00000334389 ITGB8P26012 769 aa2.46□□□□□ -2.02
LINC00643-201ENST00000334389 C15orf52Q6ZUT6 534 aaKnown RBP2.46□□□□□ -2.02
LINC00643-201ENST00000334389 ZGPATQ8N5A5 531 aaKnown RBP2.46□□□□□ -2.02
LINC00643-201ENST00000334389 HELBQ8NG08 1087 aaPredicted RBP2.46□□□□□ -2.02
LINC00643-201ENST00000334389 MCOLN1Q9GZU1 580 aa2.46□□□□□ -2.02
LINC00643-201ENST00000334389 SEMA4AQ9H3S1 761 aa2.46□□□□□ -2.02
LINC00643-201ENST00000334389 GINM1Q9NU53 330 aa2.46□□□□□ -2.02
LINC00643-201ENST00000334389 SPEF2Q9C093 1822 aa2.46□□□□□ -2.02
LINC00643-201ENST00000334389 ZBTB48P10074 688 aaPredicted RBP2.46□□□□□ -2.02
LINC00643-201ENST00000334389 CRY2Q49AN0 593 aa2.46□□□□□ -2.02
LINC00643-201ENST00000334389 RTKN2Q8IZC4 609 aa2.46□□□□□ -2.02
LINC00643-201ENST00000334389 SUPT20HQ8NEM7 779 aa2.46□□□□□ -2.02
LINC00643-201ENST00000334389 FSD2A1L4K1 749 aa2.45□□□□□ -2.02
LINC00643-201ENST00000334389 ZBTB7BO15156 539 aaPredicted RBP2.45□□□□□ -2.02
LINC00643-201ENST00000334389 FKBP4Q02790 459 aaKnown RBP eCLIP2.45□□□□□ -2.02
LINC00643-201ENST00000334389 RHOBTB2Q9BYZ6 727 aa2.45□□□□□ -2.02
LINC00643-201ENST00000334389 PIM2Q9P1W9 311 aa2.45□□□□□ -2.02
LINC00643-201ENST00000334389 CACNA1AO00555 2505 aa2.45□□□□□ -2.02
LINC00643-201ENST00000334389 PLXNA1Q9UIW2 1896 aa2.45□□□□□ -2.02
LINC00643-201ENST00000334389 KRTAP4-8A0A0G2JLE6 195 aa2.45□□□□□ -2.02
LINC00643-201ENST00000334389 KRTAP9-6A0A140TA67 174 aa2.45□□□□□ -2.02
LINC00643-201ENST00000334389 PSDA5PKW4 1024 aaPredicted RBP2.45□□□□□ -2.02
LINC00643-201ENST00000334389 MAP3K13O43283 966 aa2.45□□□□□ -2.02
LINC00643-201ENST00000334389 ZNF280AP59817 542 aaPredicted RBP2.45□□□□□ -2.02
LINC00643-201ENST00000334389 C16orf71Q8IYS4 520 aaPredicted RBP2.45□□□□□ -2.02
LINC00643-201ENST00000334389 AK7Q96M32 723 aa2.45□□□□□ -2.02
LINC00643-201ENST00000334389 SLC26A8Q96RN1 970 aa2.45□□□□□ -2.02
LINC00643-201ENST00000334389 CACNA2D2Q9NY47 1150 aa2.45□□□□□ -2.02
LINC00643-201ENST00000334389 RPTORQ8N122 1335 aa2.45□□□□□ -2.02
LINC00643-201ENST00000334389 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.44□□□□□ -2.02
LINC00643-201ENST00000334389 LCE2BO14633 110 aa2.44□□□□□ -2.02
LINC00643-201ENST00000334389 C21orf2O43822 256 aa2.44□□□□□ -2.02
LINC00643-201ENST00000334389 HOXC6P09630 235 aa2.44□□□□□ -2.02
LINC00643-201ENST00000334389 SNX17Q15036 470 aa2.44□□□□□ -2.02
LINC00643-201ENST00000334389 SAMD7Q7Z3H4 446 aa2.44□□□□□ -2.02
LINC00643-201ENST00000334389 MICALL1Q8N3F8 863 aa2.44□□□□□ -2.02
LINC00643-201ENST00000334389 KIF16BQ96L93 1317 aa2.44□□□□□ -2.02
LINC00643-201ENST00000334389 PI4K2BG5E9Z4 385 aa2.44□□□□□ -2.02
LINC00643-201ENST00000334389 FOXD2O60548 495 aaPredicted RBP2.44□□□□□ -2.02
LINC00643-201ENST00000334389 SHISA4Q96DD7 197 aa2.44□□□□□ -2.02
LINC00643-201ENST00000334389 EHMT2Q96KQ7 1210 aa2.44□□□□□ -2.02
LINC00643-201ENST00000334389 TEX13AQ9BXU3 409 aaPredicted RBP2.44□□□□□ -2.02
LINC00643-201ENST00000334389 TANGO6Q9C0B7 1094 aa2.44□□□□□ -2.02
LINC00643-201ENST00000334389 TAF1DQ9H5J8 278 aaPredicted RBP2.44□□□□□ -2.02
LINC00643-201ENST00000334389 CABP2Q9NPB3 220 aa2.44□□□□□ -2.02
LINC00643-201ENST00000334389 TRPC6Q9Y210 931 aa2.44□□□□□ -2.02
LINC00643-201ENST00000334389 DLG5Q8TDM6 1919 aa2.44□□□□□ -2.02
LINC00643-201ENST00000334389 MYH13Q9UKX3 1938 aa2.44□□□□□ -2.02
LINC00643-201ENST00000334389 GCP02774 474 aa2.44□□□□□ -2.02
LINC00643-201ENST00000334389 NBPF10Q6P3W6 841 aaKnown RBP2.44□□□□□ -2.02
LINC00643-201ENST00000334389 COL23A1Q86Y22 540 aaPredicted RBP2.44□□□□□ -2.02
LINC00643-201ENST00000334389 ZBED3Q96IU2 234 aaPredicted RBP2.44□□□□□ -2.02
LINC00643-201ENST00000334389 MRIQ9BWK5 157 aa2.44□□□□□ -2.02
LINC00643-201ENST00000334389 BRIP1Q9BX63 1249 aa2.44□□□□□ -2.02
LINC00643-201ENST00000334389 EXOC5O00471 708 aa2.43□□□□□ -2.02
LINC00643-201ENST00000334389 TRIM37O94972 964 aa2.43□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms