RNA–Protein interactions for RNA: ENST00000318023.11

CAPN3-201, Transcript of calpain 3, humanhuman

TSL 5 BASIC

Gene CAPN3, Length 3,172 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-201ENST00000318023 CCDC87Q9NVE4 849 aa11.42□□□□□ -0.58
CAPN3-201ENST00000318023 TOGARAM1Q9Y4F4 1720 aa11.42□□□□□ -0.58
CAPN3-201ENST00000318023 TEX2Q8IWB9 1127 aa11.41□□□□□ -0.58
CAPN3-201ENST00000318023 C17orf53Q8N3J3 647 aaPredicted RBP11.41□□□□□ -0.58
CAPN3-201ENST00000318023 PTMAP06454 111 aaKnown RBP11.41□□□□□ -0.58
CAPN3-201ENST00000318023 CYP19A1P11511 503 aaPredicted RBP11.41□□□□□ -0.58
CAPN3-201ENST00000318023 INTS5Q6P9B9 1019 aaKnown RBP11.41□□□□□ -0.58
CAPN3-201ENST00000318023 ZPR1O75312 459 aa11.4□□□□□ -0.58
CAPN3-201ENST00000318023 ZSCAN23Q3MJ62 389 aa11.4□□□□□ -0.58
CAPN3-201ENST00000318023 PDCL2Q8N4E4 241 aa11.4□□□□□ -0.58
CAPN3-201ENST00000318023 RNF214Q8ND24 703 aa11.4□□□□□ -0.58
CAPN3-201ENST00000318023 AK9Q5TCS8 1911 aa11.4□□□□□ -0.58
CAPN3-201ENST00000318023 KLHL40Q2TBA0 621 aa11.4□□□□□ -0.58
CAPN3-201ENST00000318023 NLGN2Q8NFZ4 835 aa11.4□□□□□ -0.58
CAPN3-201ENST00000318023 CHMP4CQ96CF2 233 aa11.4□□□□□ -0.58
CAPN3-201ENST00000318023 BCL2L12Q9HB09 334 aa11.4□□□□□ -0.58
CAPN3-201ENST00000318023 GOLGA6L22H0YM25 854 aa11.4□□□□□ -0.59
CAPN3-201ENST00000318023 PTGER2P43116 358 aa11.4□□□□□ -0.59
CAPN3-201ENST00000318023 RGS22Q8NE09 1264 aa11.4□□□□□ -0.59
CAPN3-201ENST00000318023 ZBTB3Q9H5J0 574 aa11.4□□□□□ -0.59
CAPN3-201ENST00000318023 PCDHB15Q9Y5E8 787 aa11.4□□□□□ -0.59
CAPN3-201ENST00000318023 NHSQ6T4R5 1651 aa11.4□□□□□ -0.59
CAPN3-201ENST00000318023 KIAA2012Q0VF49 1180 aa11.39□□□□□ -0.59
CAPN3-201ENST00000318023 RBM27Q9P2N5 1060 aaKnown RBP11.39□□□□□ -0.59
CAPN3-201ENST00000318023 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.39□□□□□ -0.59
CAPN3-201ENST00000318023 ZNF219Q9P2Y4 722 aaPredicted RBP11.39□□□□□ -0.59
CAPN3-201ENST00000318023 CCDC39Q9UFE4 941 aa11.39□□□□□ -0.59
CAPN3-201ENST00000318023 SNRPA1P09661 255 aaKnown RBP11.38□□□□□ -0.59
CAPN3-201ENST00000318023 GPTP24298 496 aa11.38□□□□□ -0.59
CAPN3-201ENST00000318023 MCTP1Q6DN14 999 aa11.38□□□□□ -0.59
CAPN3-201ENST00000318023 TRERF1Q96PN7 1200 aa11.38□□□□□ -0.59
CAPN3-201ENST00000318023 KIF3AQ9Y496 699 aa11.38□□□□□ -0.59
CAPN3-201ENST00000318023 RPS6KA4O75676 772 aa11.38□□□□□ -0.59
CAPN3-201ENST00000318023 CD2BP2O95400 341 aaKnown RBP11.38□□□□□ -0.59
CAPN3-201ENST00000318023 PROSER3Q2NL68 480 aa11.38□□□□□ -0.59
CAPN3-201ENST00000318023 SYT17Q9BSW7 474 aa11.38□□□□□ -0.59
CAPN3-201ENST00000318023 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP11.38□□□□□ -0.59
CAPN3-201ENST00000318023 SLFN5Q08AF3 891 aa11.38□□□□□ -0.59
CAPN3-201ENST00000318023 SMC5Q8IY18 1101 aa11.38□□□□□ -0.59
CAPN3-201ENST00000318023 MCM5P33992 734 aa11.37□□□□□ -0.59
CAPN3-201ENST00000318023 EIF4A1P60842 406 aaKnown RBP11.37□□□□□ -0.59
CAPN3-201ENST00000318023 MBIPQ9NS73 344 aa11.37□□□□□ -0.59
CAPN3-201ENST00000318023 HEG1Q9ULI3 1381 aa11.37□□□□□ -0.59
CAPN3-201ENST00000318023 PKD1L3Q7Z443 1732 aa11.37□□□□□ -0.59
CAPN3-201ENST00000318023 ITGB4P16144 1822 aa11.37□□□□□ -0.59
CAPN3-201ENST00000318023 BAG4O95429 457 aaKnown RBP11.37□□□□□ -0.59
CAPN3-201ENST00000318023 ZNF445P59923 1031 aa11.37□□□□□ -0.59
CAPN3-201ENST00000318023 GPR162Q16538 588 aa11.37□□□□□ -0.59
CAPN3-201ENST00000318023 TNNQ9UQP3 1299 aa11.37□□□□□ -0.59
CAPN3-201ENST00000318023 CEMIPQ8WUJ3 1361 aa11.37□□□□□ -0.59
CAPN3-201ENST00000318023 TRIM6-TRIM34B2RNG4 842 aa11.36□□□□□ -0.59
CAPN3-201ENST00000318023 NBPF26B4DH59 902 aa11.36□□□□□ -0.59
CAPN3-201ENST00000318023 GYS1P13807 737 aa11.36□□□□□ -0.59
CAPN3-201ENST00000318023 LMOD3Q0VAK6 560 aa11.36□□□□□ -0.59
CAPN3-201ENST00000318023 NBPF10Q6P3W6 841 aaKnown RBP11.36□□□□□ -0.59
CAPN3-201ENST00000318023 NBPF15Q8N660 670 aa11.36□□□□□ -0.59
CAPN3-201ENST00000318023 TRIM34Q9BYJ4 488 aa11.36□□□□□ -0.59
CAPN3-201ENST00000318023 IBTKQ9P2D0 1353 aaPredicted RBP11.36□□□□□ -0.59
CAPN3-201ENST00000318023 PTMSP20962 102 aa11.36□□□□□ -0.59
CAPN3-201ENST00000318023 TTLL7Q6ZT98 887 aa11.36□□□□□ -0.59
CAPN3-201ENST00000318023 DZIP3Q86Y13 1208 aaKnown RBP11.36□□□□□ -0.59
CAPN3-201ENST00000318023 TSPYL6Q8N831 410 aa11.36□□□□□ -0.59
CAPN3-201ENST00000318023 GIGYF1O75420 1035 aaPredicted RBP11.36□□□□□ -0.59
CAPN3-201ENST00000318023 CIZ1Q9ULV3 898 aaPredicted RBP11.36□□□□□ -0.59
CAPN3-201ENST00000318023 ZNF521Q96K83 1311 aa11.35□□□□□ -0.59
CAPN3-201ENST00000318023 A0A0G2JLW4 131 aa11.35□□□□□ -0.59
CAPN3-201ENST00000318023 DNAJC2Q99543 621 aaKnown RBP11.35□□□□□ -0.59
CAPN3-201ENST00000318023 NUP188Q5SRE5 1749 aa11.35□□□□□ -0.59
CAPN3-201ENST00000318023 ERICH4A6NGS2 130 aa11.35□□□□□ -0.59
CAPN3-201ENST00000318023 WWC1Q8IX03 1113 aa11.35□□□□□ -0.59
CAPN3-201ENST00000318023 C8orf58Q8NAV2 365 aa11.35□□□□□ -0.59
CAPN3-201ENST00000318023 PRIMPOLQ96LW4 560 aa11.35□□□□□ -0.59
CAPN3-201ENST00000318023 HDGFL1Q5TGJ6 251 aa11.34□□□□□ -0.59
CAPN3-201ENST00000318023 SYCE3A1L190 88 aa11.34□□□□□ -0.59
CAPN3-201ENST00000318023 CHRM1P11229 460 aaPredicted RBP11.34□□□□□ -0.59
CAPN3-201ENST00000318023 HMGN5P82970 282 aaKnown RBP11.34□□□□□ -0.59
CAPN3-201ENST00000318023 CHPF2Q9P2E5 772 aa11.34□□□□□ -0.59
CAPN3-201ENST00000318023 HTATSF1O43719 755 aaKnown RBP11.34□□□□□ -0.59
CAPN3-201ENST00000318023 CAPN2P17655 700 aa11.34□□□□□ -0.59
CAPN3-201ENST00000318023 CHRNA5P30532 468 aa11.34□□□□□ -0.59
CAPN3-201ENST00000318023 HLFQ16534 295 aa11.34□□□□□ -0.59
CAPN3-201ENST00000318023 BCL2L13Q9BXK5 485 aa11.34□□□□□ -0.59
CAPN3-201ENST00000318023 PARP3Q9Y6F1 533 aa11.34□□□□□ -0.59
CAPN3-201ENST00000318023 BRD2P25440 801 aaKnown RBP11.33□□□□□ -0.6
CAPN3-201ENST00000318023 GTF2F1P35269 517 aaKnown RBP eCLIP11.33□□□□□ -0.6
CAPN3-201ENST00000318023 NFIXQ14938 502 aa11.33□□□□□ -0.6
CAPN3-201ENST00000318023 TBC1D9BQ66K14 1250 aa11.33□□□□□ -0.6
CAPN3-201ENST00000318023 FLAD1Q8NFF5 587 aa11.33□□□□□ -0.6
CAPN3-201ENST00000318023 CHAMP1Q96JM3 812 aa11.33□□□□□ -0.6
CAPN3-201ENST00000318023 COL15A1P39059 1388 aa11.33□□□□□ -0.6
CAPN3-201ENST00000318023 RLBP1P12271 317 aa11.33□□□□□ -0.6
CAPN3-201ENST00000318023 DDR1Q08345 913 aa11.33□□□□□ -0.6
CAPN3-201ENST00000318023 CNTNAP4Q9C0A0 1308 aa11.33□□□□□ -0.6
CAPN3-201ENST00000318023 NUTM1Q86Y26 1132 aa11.32□□□□□ -0.6
CAPN3-201ENST00000318023 SOS1Q07889 1333 aaPredicted RBP11.32□□□□□ -0.6
CAPN3-201ENST00000318023 RBM25P49756 843 aaKnown RBP11.32□□□□□ -0.6
CAPN3-201ENST00000318023 NOLC1Q14978 699 aaKnown RBP eCLIP11.32□□□□□ -0.6
CAPN3-201ENST00000318023 COPS6Q7L5N1 327 aa11.32□□□□□ -0.6
CAPN3-201ENST00000318023 BCS1LQ9Y276 419 aa11.32□□□□□ -0.6
CAPN3-201ENST00000318023 USP42Q9H9J4 1324 aaKnown RBP11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms